AT1G28120

CONTAINS InterPro DOMAIN s Ubiquitin thioesterase Otubain (InterPro IPR016615), Ovarian tumour, otubain (InterPro IPR003323)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012440
Physical Location & Seq
Reverse (-)
9812930 .. 9815560
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28120.1

Sequence Viewer

Length: 921 bp
ATGCAGAATCAGATTGATATGGTGAAGGATGAAGCGGAAGTAGCTGCATCGATTTCAGCAATTAAGGGTGAAGAATGGGGAAATTGTTCATCAGTGGAAGATCAACCATCTTTTCAAGAAGAAGAAGCTGCTAAAGTTCCTTATGTTGGTGATAAGGAACCTCTGTCTAGTTTAGCTGCAGAGTATCAATCAGGGAGTCCCATTTTGCTGGAGAAGATTAAGATACTGGACAGTCAATATATCGGAATCCGGCGAACAAGAGGAGATGGAAATTGCTTCTTCCGAAGTTTTATGTTCTCTTACCTTGAGCATATATTGGAATCACAAGATCGTGCTGAAGTCGATCGTATCAAGGTCAATGTTGAGAAATGTAGAAAGACTCTGCAAAACTTAGGTTATACAGATTTTACATTTGAGGACTTCTTTGCGTTGTTCCTTGAGCAACTAGATGACATTCTCCAAGGAACTGAAGAGTCTATAAGCTACGATGAGCTGGTTAACAGAAGTAGAGATCAGTCAGTCTCAGATTACATTGTAATGTTCTTTAGGTTTGTTACTGCTGGTGATATACGAACGCGTGCCGATTTTTTCGAGCCTTTTATAACAGGCTTATCAAATGCAACAGTGGATCAGTTTTGCAAGTCCTCGGTCGAACCAATGGGGGAAGAGAGTGACCATATTCACATAACTGCTTTGTCGGACGCACTTGGTGTTGCAATCCGTGTTGTGTATCTTGACCGTAGCTCATGTGATAGTGGGGGCGTCACTGTGAATCATCATGACTTTGTTCCTGTGGGCATTACCAATGAGAAAGATGAAGAAGCTTCTGCTCCATTTATAACCTTGCTGTATCGTCCAGGCCATTACGATATCCTCTACCCCAAGCCATCTTGTAAGGTATCAGACAATGTGGGGAAATGA

Protein Analysis

306

Amino Acids

34.43

Weight (kDa)

4.55

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C65 PF10275 42 - 294 2.6e-92 Peptidase C65 Otubain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28120
fragaria_vesca FvH4_4g22670 FvH4_4g22670
malus_domestica MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica Prupe.1G215300_v2.0.a1
pyrus_communis pycom13g11370
rosa_chinensis RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata RLG00000007115
rosa_multiflora Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii Rroxscaffold_5G00370580
rosa_rugosa Rorug04G0230400
rosa_samantha Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana Rw4G024880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 602, 839
AccII CGCG 1 cut(s) 577
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 636
AcuI CTGAAG 2 cut(s) 357, 489
AcyI GRCGYC 1 cut(s) 762
AdeI CACNNNGTG 1 cut(s) 710
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 575
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 7 cut(s) 44, 128, 176, 483, 493, 744, 824
AluI AGCT 7 cut(s) 44, 128, 176, 483, 493, 744, 824
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 1 cut(s) 636
AoxI GGCC 1 cut(s) 859
ApeKI GCWGC 3 cut(s) 44, 128, 176
Asp700I GAANNNNTTC 1 cut(s) 85
AsuHPI GGTGA 4 cut(s) 34, 80, 161, 575
BbvI GCAGC 3 cut(s) 31, 115, 163
BccI CCATC 3 cut(s) 115, 260, 895
BciT130I CCWGG 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 2 cut(s) 168, 446
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 3 cut(s) 45, 129, 177
BlsI GCNGC 3 cut(s) 46, 130, 178
Bme1390I CCNGG 1 cut(s) 858
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 2 cut(s) 326, 458
Bsa29I ATCGAT 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 762
BsaJI CCNNGG 2 cut(s) 460, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 858
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 460, 645
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 3 cut(s) 31, 115, 163
Bsh1236I CGCG 1 cut(s) 577
Bsh1285I CGRYCG 2 cut(s) 346, 651
BshFI GGCC 1 cut(s) 861
BshVI ATCGAT 1 cut(s) 50
BsiEI CGRYCG 2 cut(s) 346, 651
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 861
Bsp143I GATC 5 cut(s) 100, 328, 343, 511, 628
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 861
BspCNI CTCAG 1 cut(s) 536
BspDI ATCGAT 1 cut(s) 50
BspFNI CGCG 1 cut(s) 577
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 1 cut(s) 636
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 460, 645
BssMI GATC 5 cut(s) 100, 328, 343, 511, 628
BssNI GRCGYC 1 cut(s) 762
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 4 cut(s) 233, 625, 740, 769
Bst6I CTCTTC 2 cut(s) 465, 660
BstACI GRCGYC 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 2 cut(s) 391, 523
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 577
BstKTI GATC 5 cut(s) 103, 331, 346, 514, 631
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 5 cut(s) 100, 328, 343, 511, 628
BstMCI CGRYCG 2 cut(s) 346, 651
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 1 cut(s) 856
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 3 cut(s) 31, 115, 163
BstXI CCANNNNNNTGG 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 50
BsuRI GGCC 1 cut(s) 861
BsuTUI ATCGAT 1 cut(s) 50
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 3 cut(s) 99, 630, 765
Cac8I GCNNGC 1 cut(s) 579
CciI TCATGA 1 cut(s) 778
ClaI ATCGAT 1 cut(s) 50
CseI GACGC 2 cut(s) 710, 751
CviAII CATG 2 cut(s) 747, 779
DdeI CTNAG 2 cut(s) 391, 523
DpnI GATC 5 cut(s) 102, 330, 345, 513, 630
DpnII GATC 5 cut(s) 100, 328, 343, 511, 628
DraIII CACNNNGTG 1 cut(s) 710
Eam1104I CTCTTC 2 cut(s) 465, 660
EarI CTCTTC 2 cut(s) 465, 660
Eco130I CCWWGG 1 cut(s) 460
Eco32I GATATC 1 cut(s) 871
Eco57I CTGAAG 2 cut(s) 357, 489
EcoRII CCWGG 1 cut(s) 856
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 746, 778
Fnu4HI GCNGC 3 cut(s) 45, 129, 177
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 45, 129, 177
FspBI CTAG 2 cut(s) 168, 446
GluI GCNGC 3 cut(s) 45, 129, 177
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 1 cut(s) 861
HapII CCGG 1 cut(s) 250
HgaI GACGC 2 cut(s) 710, 751
Hin1I GRCGYC 1 cut(s) 762
Hin1II CATG 2 cut(s) 750, 782
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 7 cut(s) 7, 196, 246, 320, 379, 473, 772
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 1 cut(s) 250
HphI GGTGA 4 cut(s) 34, 80, 161, 575
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 6 cut(s) 12, 245, 284, 526, 700, 904
Hpy188III TCNNGA 3 cut(s) 116, 734, 779
Hpy8I GTNNAC 1 cut(s) 499
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 4 cut(s) 233, 625, 740, 769
HpyCH4V TGCA 7 cut(s) 4, 47, 179, 385, 620, 639, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 391, 523
Hsp92I GRCGYC 1 cut(s) 762
Hsp92II CATG 2 cut(s) 750, 782
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 5 cut(s) 100, 328, 343, 511, 628
LmnI GCTCC 1 cut(s) 835
Lsp1109I GCAGC 3 cut(s) 31, 115, 163
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 168, 446
MaeIII GTNAC 3 cut(s) 553, 671, 763
MalI GATC 5 cut(s) 102, 330, 345, 513, 630
MboI GATC 5 cut(s) 100, 328, 343, 511, 628
MboII GAAGA 9 cut(s) 83, 110, 131, 134, 226, 271, 482, 677, 830
MluCI AATT 3 cut(s) 60, 82, 271
MluI ACGCGT 1 cut(s) 575
MlyI GAGTC 3 cut(s) 205, 373, 482
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 5 cut(s) 171, 254, 409, 655, 884
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 3 cut(s) 63, 219, 498
MslI CAYNNNNRTG 1 cut(s) 536
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 858
MvnI CGCG 1 cut(s) 577
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 5 cut(s) 100, 328, 343, 511, 628
NlaIII CATG 2 cut(s) 750, 782
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 671, 763
PagI TCATGA 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 4 cut(s) 7, 246, 320, 772
PkrI GCNGC 3 cut(s) 46, 130, 178
Ple19I CGATCG 1 cut(s) 346
PleI GAGTC 3 cut(s) 204, 373, 481
PpsI GAGTC 3 cut(s) 204, 373, 481
PsiI TTATAA 2 cut(s) 602, 839
Psp6I CCWGG 1 cut(s) 856
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 1 cut(s) 159
PstI CTGCAG 1 cut(s) 181
PvuI CGATCG 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 3 cut(s) 63, 219, 498
SatI GCNGC 3 cut(s) 45, 129, 177
Sau3AI GATC 5 cut(s) 100, 328, 343, 511, 628
SchI GAGTC 3 cut(s) 205, 373, 482
ScrFI CCNGG 1 cut(s) 858
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 2 cut(s) 305, 437
SmoI CTYRAG 2 cut(s) 305, 437
Sse9I AATT 3 cut(s) 60, 82, 271
SsiI CCGC 1 cut(s) 35
SspMI CTAG 2 cut(s) 168, 446
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 4 cut(s) 233, 625, 740, 769
TaqI TCGA 4 cut(s) 50, 342, 591, 651
TaqII GACCGA 1 cut(s) 637
TasI AATT 3 cut(s) 60, 82, 271
TfiI GAWTC 4 cut(s) 7, 246, 320, 772
Tru1I TTAA 3 cut(s) 63, 219, 498
Tru9I TTAA 3 cut(s) 63, 219, 498
TscAI CASTG 3 cut(s) 99, 630, 772
TseFI GTSAC 2 cut(s) 671, 763
TseI GCWGC 3 cut(s) 44, 128, 176
Tsp45I GTSAC 2 cut(s) 671, 763
TspDTI ATGAA 3 cut(s) 45, 78, 831
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 3 cut(s) 99, 630, 772
XmnI GAANNNNTTC 1 cut(s) 85
XspI CTAG 2 cut(s) 168, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.