Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Forward (+)

46458951 .. 46463506

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG292700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCAGAATCAGGAAGGGCTTCAAGTGCAAGTGGATGGGGAAGTGGAGTCTGGGCCGGCCCCCTCGGTTGCAACACCTGACTTTGATGAGTGGGCAAGCTTTGGGGACCAGGATATCATGCAGCAGCACTCTGCCATTCGCGCCAAGGAGGCCGAGAAAATTCCCTTCCTGGGGGACAAGGAACCCCTCTCCTCCCTGGCAGCTGAGTATCAATCAGGCAGCGCTATTTTGTTGGAGAAAATAAAGGTTCTTGGTGAACAATATGCTGCCATTAGGAGAACCCGGGGCGACGGCAACTGCTTCTTCCGAAGCTTTATGTTTTCATACCTGGAGCATATTTTGGAATCACAAGATGTAAGTGAAGTTGATCGTATCAAGGCTAATGTTGAACAATGTAGAAAAACACTTCAGAGCTTGGGTTATGCAGACTTTACCTTTGAGGACTTCTTTTCGCTATTTCTTGAGCAACTGGATAGTGTTCTTCAAGGAAATGAAGAATCCATTAGTCATGATGAGCTCATACTTCGGAGCCGTGATCAGTCAGTATCCGACTATGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

4.39

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C65	PF10275	50 - 185	1.1e-39	Peptidase C65 Otubain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	392
AfeI	AGCGCT	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	170, 171
AgsI	TTSAA	3 cut(s)	23, 389, 485
AjnI	CCWGG	4 cut(s)	108, 168, 195, 327
AluBI	AGCT	5 cut(s)	99, 203, 312, 414, 517
AluI	AGCT	5 cut(s)	99, 203, 312, 414, 517
Alw21I	GWGCWC	1 cut(s)	519
Ama87I	CYCGRG	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	223
AoxI	GGCC	3 cut(s)	53, 57, 150
ApeKI	GCWGC	5 cut(s)	121, 124, 200, 219, 266
ApoI	RAATTY	1 cut(s)	159
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	143, 224
AspS9I	GGNCC	3 cut(s)	53, 58, 106
AsuC2I	CCSGG	2 cut(s)	283, 284
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	5 cut(s)	133, 136, 212, 231, 253
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	307, 516
BciT130I	CCWGG	4 cut(s)	110, 170, 197, 329
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	283, 284
BfoI	RGCGCY	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	5 cut(s)	122, 125, 201, 220, 267
BlsI	GCNGC	5 cut(s)	123, 126, 202, 221, 268
Bme1390I	CCNGG	6 cut(s)	110, 170, 197, 283, 284, 329
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	3 cut(s)	53, 58, 106
BmiI	GGNNCC	4 cut(s)	60, 107, 183, 530
BmrFI	CCNGG	6 cut(s)	110, 170, 197, 283, 284, 329
BpmI	CTGGAG	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	2 cut(s)	283, 284
BsaJI	CCNNGG	6 cut(s)	63, 144, 169, 195, 282, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 171
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	474
BseBI	CCWGG	4 cut(s)	110, 170, 197, 329
BseDI	CCNNGG	6 cut(s)	63, 144, 169, 195, 282, 283
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	2 cut(s)	170, 171
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	5 cut(s)	133, 136, 212, 231, 253
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	55, 59, 152
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	56, 283
BslFI	GGGAC	2 cut(s)	119, 188
BslI	CCNNNNNNNGG	2 cut(s)	170, 171
BsmFI	GGGAC	2 cut(s)	119, 188
BsnI	GGCC	3 cut(s)	55, 59, 152
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	367, 535
BspANI	GGCC	3 cut(s)	55, 59, 152
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	60, 107, 183, 530
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	6 cut(s)	63, 144, 169, 195, 282, 283
BssMI	GATC	2 cut(s)	367, 535
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	4 cut(s)	110, 170, 197, 329
BstC8I	GCNNGC	2 cut(s)	57, 97
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	40
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	143, 224
BstKTI	GATC	2 cut(s)	370, 538
BstMBI	GATC	2 cut(s)	367, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 140, 149
BstNI	CCWGG	4 cut(s)	110, 170, 197, 329
BstSCI	CCNGG	6 cut(s)	108, 168, 195, 281, 282, 327
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	5 cut(s)	133, 136, 212, 231, 253
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	55, 59, 152
BtsCI	GGATG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	57, 97
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	2 cut(s)	143, 224
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	53, 58, 106
Cfr9I	CCCGGG	1 cut(s)	282
CviAII	CATG	2 cut(s)	118, 509
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	369, 537
DpnII	GATC	2 cut(s)	367, 535
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	106
Eco47III	AGCGCT	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	517
EcoRII	CCWGG	4 cut(s)	108, 168, 195, 327
EcoRV	GATATC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	121, 512
FaiI	YATR	9 cut(s)	119, 264, 317, 325, 336, 423, 510, 521, 555
FaqI	GGGAC	2 cut(s)	119, 188
FatI	CATG	2 cut(s)	117, 508
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	5 cut(s)	122, 125, 201, 220, 267
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	519
FseI	GGCCGGCC	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	122, 125, 201, 220, 267
GlaI	GCGC	2 cut(s)	142, 223
GluI	GCNGC	5 cut(s)	122, 125, 201, 220, 267
GsuI	CTGGAG	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	55, 59, 152
HapII	CCGG	2 cut(s)	56, 283
HhaI	GCGC	2 cut(s)	143, 224
Hin1II	CATG	2 cut(s)	121, 512
Hin6I	GCGC	2 cut(s)	141, 222
HinP1I	GCGC	2 cut(s)	141, 222
HindIII	AAGCTT	2 cut(s)	97, 310
HinfI	GANTC	4 cut(s)	7, 47, 344, 497
HpaII	CCGG	2 cut(s)	56, 283
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	4 cut(s)	308, 411, 528, 550
Hpy188III	TCNNGA	3 cut(s)	11, 461, 509
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	8, 175
HpyCH4V	TGCA	5 cut(s)	4, 28, 71, 121, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 140, 149
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	121, 512
HspAI	GCGC	2 cut(s)	141, 222
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	2 cut(s)	367, 535
LmnI	GCTCC	2 cut(s)	331, 528
Lsp1109I	GCAGC	5 cut(s)	133, 136, 212, 231, 253
MalI	GATC	2 cut(s)	369, 537
MboI	GATC	2 cut(s)	367, 535
MboII	GAAGA	3 cut(s)	295, 473, 506
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	5 cut(s)	73, 142, 197, 202, 433
MroNI	GCCGGC	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	56, 283
MspR9I	CCNGG	6 cut(s)	110, 170, 197, 283, 284, 329
MvaI	CCWGG	4 cut(s)	110, 170, 197, 329
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	25, 140, 149
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	283, 284
NdeII	GATC	2 cut(s)	367, 535
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	121, 512
NlaIV	GGNNCC	4 cut(s)	60, 107, 183, 530
NmeAIII	GCCGAG	1 cut(s)	178
PagI	TCATGA	1 cut(s)	508
PdiI	GCCGGC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	7, 344, 497
PkrI	GCNGC	5 cut(s)	123, 126, 202, 221, 268
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	519
Psp6I	CCWGG	4 cut(s)	108, 168, 195, 327
PspGI	CCWGG	4 cut(s)	108, 168, 195, 327
PspN4I	GGNNCC	4 cut(s)	60, 107, 183, 530
PspPI	GGNCC	3 cut(s)	53, 58, 106
PvuII	CAGCTG	1 cut(s)	203
RigI	GGCCGGCC	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	519
SatI	GCNGC	5 cut(s)	122, 125, 201, 220, 267
Sau3AI	GATC	2 cut(s)	367, 535
Sau96I	GGNCC	3 cut(s)	53, 58, 106
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	6 cut(s)	110, 170, 197, 283, 284, 329
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	9 cut(s)	79, 101, 205, 249, 314, 330, 416, 437, 519
SinI	GGWCC	1 cut(s)	106
SmaI	CCCGGG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	159
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	6 cut(s)	108, 168, 195, 281, 282, 327
StyI	CCWWGG	1 cut(s)	144
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	7, 344, 497
TseI	GCWGC	5 cut(s)	121, 124, 200, 219, 266
TspDTI	ATGAA	2 cut(s)	312, 507
TspMI	CCCGGG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	159
XmaI	CCCGGG	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.