Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Reverse (-)

7805418 .. 7807823

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11370.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGCAGCACTCGGCGATTCGAGCAGAGGAGGCTGAGAAAATTCCCTTTCTTGGGGACAAGGAACCACTCTCATCGCTGGCATCTGAATATCGATCAGGCAGCGCTATCTTGTTGGAGAAAATAAAGGTTCTCGGTGAACAATATGCTGCTATTCGGCGAACAAGAGGAGATGGGAACTGCTTCTTCCGAAGCTTTATGTTTTCATACCTTGAGCATATTTTGGAATCACAAGATCAAAGTGAAGTTGACCGTATCAAGGCCAATGTTGAACAGTGCAGAAAAACACTTCAAAGCTTGGGTTACGCAGACTTTACTTTTGAGGATTTTTTTGCGTTATTCCTTGAGCAGCTGGACAGTGTTCTTCAAGGAAATGAAGATTCCATAAGTCATGATGAGCTCATACGTAGGAGCCGAGATCAGTCAGTATCTGACTATGTTGTGATGTTTTTCAGATTTGTTACCTCTGGCGAAATACGGAAACGCTCAGAGTTTTTTGAACCTTTTATATTCGGATTGACCAATGCAACTGTAGAGCAGTTTTGCAAGTCATCCGTGGAACCAATGGGTGAAGAAAGTGACCATGTGCACATCACTGCCCTGTCAGATGCACTTGGCGTGCCAATCCGTGTGGTGTACCTAGACCGTAGCTCATGTGATAATGGTGGTGTTAGCGTGAATCATCATGATTTCGTTCCTGCTGGAAGCGATGCTCCAAAAGCTAGTGAGGGCTCTGAGAAAGTGACTCCCTCTATTACCTTGCTATATCGCCCAGGCCACTACGATCTTCTCTACCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

268

Amino Acids

30.16

Weight (kDa)

5.02

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	1 cut(s)	638
AfeI	AGCGCT	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	53, 54, 259
AgsI	TTSAA	4 cut(s)	272, 293, 368, 500
AjnI	CCWGG	1 cut(s)	772
AluBI	AGCT	6 cut(s)	195, 297, 352, 400, 651, 722
AluI	AGCT	6 cut(s)	195, 297, 352, 400, 651, 722
Alw21I	GWGCWC	2 cut(s)	402, 591
Alw44I	GTGCAC	1 cut(s)	587
AlwNI	CAGNNNCTG	1 cut(s)	431
Aor51HI	AGCGCT	1 cut(s)	106
AoxI	GGCC	2 cut(s)	261, 775
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	5 cut(s)	4, 7, 102, 149, 349
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	149, 581
BaeGI	GKGCMC	1 cut(s)	591
BanII	GRGCYC	2 cut(s)	402, 734
Bbv12I	GWGCWC	2 cut(s)	402, 591
BbvI	GCAGC	5 cut(s)	16, 19, 114, 136, 361
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	774
BfaI	CTAG	2 cut(s)	641, 723
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	108
BisI	GCNGC	5 cut(s)	5, 8, 103, 150, 350
BlsI	GCNGC	5 cut(s)	6, 9, 104, 151, 351
Bme1390I	CCNGG	1 cut(s)	774
BmiI	GGNNCC	3 cut(s)	66, 413, 561
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	3 cut(s)	92, 598, 700
BpuEI	CTTGAG	2 cut(s)	233, 365
Bsa29I	ATCGAT	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	555, 772
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 54, 259
BseBI	CCWGG	1 cut(s)	774
BseCI	ATCGAT	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	555, 772
BseGI	GGATG	1 cut(s)	551
BseLI	CCNNNNNNNGG	3 cut(s)	53, 54, 259
BseMII	CTCAG	3 cut(s)	27, 501, 726
BseRI	GAGGAG	2 cut(s)	44, 183
BseSI	GKGCMC	1 cut(s)	591
BseXI	GCAGC	5 cut(s)	16, 19, 114, 136, 361
BsgI	GTGCAG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	263, 777
BshVI	ATCGAT	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	402, 591
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	53, 54, 259
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	263, 777
Bsp1286I	GDGCHC	3 cut(s)	402, 591, 734
Bsp143I	GATC	4 cut(s)	95, 235, 418, 784
BspANI	GGCC	2 cut(s)	263, 777
BspCNI	CTCAG	3 cut(s)	28, 500, 727
BspDI	ATCGAT	1 cut(s)	94
BspHI	TCATGA	2 cut(s)	391, 685
BspLI	GGNNCC	3 cut(s)	66, 413, 561
BssECI	CCNNGG	2 cut(s)	555, 772
BssMI	GATC	4 cut(s)	95, 235, 418, 784
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	5 cut(s)	254, 276, 359, 532, 647
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	81, 620
BstDEI	CTNAG	3 cut(s)	36, 487, 735
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	4 cut(s)	98, 238, 421, 787
BstMBI	GATC	4 cut(s)	95, 235, 418, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 719
BstNI	CCWGG	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	772
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	591
BstSNI	TACGTA	1 cut(s)	407
BstV1I	GCAGC	5 cut(s)	16, 19, 114, 136, 361
Bsu15I	ATCGAT	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	263, 777
BsuTUI	ATCGAT	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	555
BtgZI	GCGATG	2 cut(s)	60, 723
BtsCI	GGATG	1 cut(s)	551
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	3 cut(s)	281, 364, 594
Cac8I	GCNNGC	2 cut(s)	81, 620
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	2 cut(s)	391, 685
CfoI	GCGC	1 cut(s)	107
ClaI	ATCGAT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	637
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviAII	CATG	4 cut(s)	392, 584, 654, 686
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	3 cut(s)	36, 487, 735
DpnI	GATC	4 cut(s)	97, 237, 420, 786
DpnII	GATC	4 cut(s)	95, 235, 418, 784
Ecl136II	GAGCTC	1 cut(s)	400
Eco105I	TACGTA	1 cut(s)	407
Eco24I	GRGCYC	2 cut(s)	402, 734
Eco47III	AGCGCT	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	772
EcoT38I	GRGCYC	2 cut(s)	402, 734
FaeI	CATG	4 cut(s)	395, 587, 657, 689
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	391, 583, 653, 685
Fnu4HI	GCNGC	5 cut(s)	5, 8, 103, 150, 350
FokI	GGATG	1 cut(s)	538
FriOI	GRGCYC	2 cut(s)	402, 734
Fsp4HI	GCNGC	5 cut(s)	5, 8, 103, 150, 350
FspBI	CTAG	2 cut(s)	641, 723
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	5 cut(s)	5, 8, 103, 150, 350
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	263, 777
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	4 cut(s)	395, 587, 657, 689
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	193, 295
HinfI	GANTC	5 cut(s)	19, 227, 380, 679, 745
HphI	GGTGA	2 cut(s)	149, 581
Hpy166II	GTNNAC	4 cut(s)	140, 250, 589, 637
Hpy188I	TCNGA	8 cut(s)	88, 191, 433, 455, 490, 515, 607, 736
Hpy188III	TCNNGA	2 cut(s)	392, 686
Hpy8I	GTNNAC	4 cut(s)	140, 250, 589, 637
HpyCH4III	ACNGT	5 cut(s)	254, 276, 359, 532, 647
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	4, 279, 527, 546, 589, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 719
HpyF3I	CTNAG	3 cut(s)	36, 487, 735
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	395, 587, 657, 689
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	95, 235, 418, 784
LmnI	GCTCC	2 cut(s)	411, 718
LpnPI	CCDG	9 cut(s)	65, 84, 338, 453, 614, 687, 711, 759, 786
Lsp1109I	GCAGC	5 cut(s)	16, 19, 114, 136, 361
LweI	GCATC	3 cut(s)	92, 598, 700
MaeI	CTAG	2 cut(s)	641, 723
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	4 cut(s)	302, 460, 578, 742
MalI	GATC	4 cut(s)	97, 237, 420, 786
MboI	GATC	4 cut(s)	95, 235, 418, 784
MboII	GAAGA	5 cut(s)	178, 356, 389, 584, 779
MhlI	GDGCHC	3 cut(s)	402, 591, 734
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	22, 25, 161, 316, 475, 721, 760
MroXI	GAANNNNTTC	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	774
MvaI	CCWGG	1 cut(s)	774
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 719
NdeII	GATC	4 cut(s)	95, 235, 418, 784
NlaIII	CATG	4 cut(s)	395, 587, 657, 689
NlaIV	GGNNCC	3 cut(s)	66, 413, 561
NmeAIII	GCCGAG	1 cut(s)	440
NmuCI	GTSAC	2 cut(s)	578, 742
PagI	TCATGA	2 cut(s)	391, 685
PcsI	WCGNNNNNNNCGW	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	4 cut(s)	19, 227, 380, 679
PkrI	GCNGC	5 cut(s)	6, 9, 104, 151, 351
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
Ppu21I	YACGTR	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	3 cut(s)	66, 413, 561
PstNI	CAGNNNCTG	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	402
SatI	GCNGC	5 cut(s)	5, 8, 103, 150, 350
Sau3AI	GATC	4 cut(s)	95, 235, 418, 784
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	1 cut(s)	774
SduI	GDGCHC	3 cut(s)	402, 591, 734
SfaNI	GCATC	3 cut(s)	92, 598, 700
SfcI	CTRYAG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	212, 344
SmoI	CTYRAG	2 cut(s)	212, 344
SnaBI	TACGTA	1 cut(s)	407
Sse9I	AATT	1 cut(s)	42
SspMI	CTAG	2 cut(s)	641, 723
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	5 cut(s)	254, 276, 359, 532, 647
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	22, 94
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	19, 227, 380, 679
TscAI	CASTG	3 cut(s)	281, 364, 601
TseFI	GTSAC	2 cut(s)	578, 742
TseI	GCWGC	5 cut(s)	4, 7, 102, 149, 349
Tsp45I	GTSAC	2 cut(s)	578, 742
TspDTI	ATGAA	2 cut(s)	195, 390
TspGWI	ACGGA	3 cut(s)	493, 544, 617
TspRI	CASTG	3 cut(s)	281, 364, 601
VneI	GTGCAC	1 cut(s)	587
XapI	RAATTY	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	2 cut(s)	641, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.