Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Forward (+)

22824839 .. 22828740

Gene Structure 3902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCAGAATCAGGATGGGGTCCAAGTGGATGGGGAAGTGGAGTCTGCAACATCAGTTCCGACCCCTGAGTTTGATGAGTGGGCAAACTTTGGGGACCAAGATATCATGCAGCAGCACTCTGCAATTCGAGCTGAGGAGGCTGAGAAAATTCCCTTTCTGGGGGACAAGGAACCACTCTCGTCCCTGGCAGCTGAATATCAATCAGGCAGCGCGATCTTGTTGGAGAAAATCAAGGTTCTTGGTGAACAATATGCTGCCATTCGCCGAACACGGGGAGATGGGAACTGCTTCTTCCGCAGTTTTATGTTTTCATATCTTGAGCATATTTTGGAATCACAAGATCAAAGTGAAGTTGACCGTATCAAGGCCAATGTTGAACAGTGTAGAAAAACACTTCAAAGCTTGGGTTATGCAGACTTTACTTTTGAGGATTTCTTTGCGTTATTCCTTGAGCAGCTGGACAGTGTTCTTCAAGGAAATGAAGCATCCATAAGTCATGATGAGCTCATACTTAGGAGCCGAGATCAGTCAGTATCCGACTATGTTGTGATGTTTTTCAGATTTGTTACCTCTGGTGAAATACGGAAACGCGCAGAGTTTTTTGAACCTTTTATATTAGGATTGACCAATGCAACCGTAGAGCAGTTTTGCAAGTCATCAGTGGAACCAATGGGTGAAGAAAGCGACCATGTGCACATCACTGCCCTGTCAGATGCATTGGGCGTGCCAATCCGTGTTGTGTACCTTGACCGTAGTTCGTGTGATACTGGTGGTGTTAGCGTGAATCATCATGATTTCGTCCCTGCTGGAAGTGATCTTCCAAATGCTAGTGGGTGCTCTGAGAAAGTTAGTCCCTTTATTACCTTGCTATATCGCCCAGGTCACTACGATATTCTCTACCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

303

Amino Acids

33.85

Weight (kDa)

4.59

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	212, 591
AciI	CCGC	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	147
AfaI	GTAC	1 cut(s)	743
AfiI	CCNNNNNNNGG	4 cut(s)	158, 159, 271, 364
AgsI	TTSAA	4 cut(s)	377, 398, 473, 605
AjnI	CCWGG	2 cut(s)	183, 877
AluBI	AGCT	5 cut(s)	131, 191, 402, 457, 505
AluI	AGCT	5 cut(s)	131, 191, 402, 457, 505
Alw21I	GWGCWC	3 cut(s)	507, 696, 839
Alw44I	GTGCAC	1 cut(s)	692
AoxI	GGCC	1 cut(s)	366
ApaLI	GTGCAC	1 cut(s)	692
ApeKI	GCWGC	6 cut(s)	109, 112, 188, 207, 254, 454
ApoI	RAATTY	1 cut(s)	147
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	212, 593
AspS9I	GGNCC	2 cut(s)	19, 94
AsuHPI	GGTGA	3 cut(s)	254, 587, 686
AvaII	GGWCC	2 cut(s)	19, 94
BaeGI	GKGCMC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	507
Bbv12I	GWGCWC	3 cut(s)	507, 696, 839
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	6 cut(s)	121, 124, 200, 219, 241, 466
BccI	CCATC	3 cut(s)	8, 23, 272
BciT130I	CCWGG	2 cut(s)	185, 879
BciVI	GTATCC	1 cut(s)	544
BfaI	CTAG	1 cut(s)	828
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	6 cut(s)	110, 113, 189, 208, 255, 455
BlsI	GCNGC	6 cut(s)	111, 114, 190, 209, 256, 456
Bme1390I	CCNGG	2 cut(s)	185, 879
Bme18I	GGWCC	2 cut(s)	19, 94
BmgT120I	GGNCC	2 cut(s)	19, 94
BmiI	GGNNCC	5 cut(s)	20, 95, 171, 518, 666
BmrFI	CCNGG	2 cut(s)	185, 879
BmsI	GCATC	2 cut(s)	494, 703
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	338, 470
BsaJI	CCNNGG	2 cut(s)	183, 877
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 159, 271, 364
Bse1I	ACTGG	1 cut(s)	772
BseBI	CCWGG	2 cut(s)	185, 879
BseDI	CCNNGG	2 cut(s)	183, 877
BseGI	GGATG	3 cut(s)	19, 34, 485
BseLI	CCNNNNNNNGG	4 cut(s)	158, 159, 271, 364
BseMII	CTCAG	4 cut(s)	57, 123, 132, 831
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	6 cut(s)	121, 124, 200, 219, 241, 466
Bsh1236I	CGCG	2 cut(s)	212, 591
BshFI	GGCC	1 cut(s)	368
BsiHKAI	GWGCWC	3 cut(s)	507, 696, 839
BslFI	GGGAC	5 cut(s)	107, 166, 176, 785, 837
BslI	CCNNNNNNNGG	4 cut(s)	158, 159, 271, 364
BsmFI	GGGAC	5 cut(s)	107, 166, 176, 785, 837
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	507, 696, 839
Bsp143I	GATC	4 cut(s)	213, 340, 523, 814
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	4 cut(s)	58, 124, 133, 832
BspFNI	CGCG	2 cut(s)	212, 591
BspHI	TCATGA	2 cut(s)	496, 790
BspLI	GGNNCC	5 cut(s)	20, 95, 171, 518, 666
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	2 cut(s)	183, 877
BssMI	GATC	4 cut(s)	213, 340, 523, 814
Bst2UI	CCWGG	2 cut(s)	185, 879
Bst4CI	ACNGT	5 cut(s)	359, 381, 464, 637, 752
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	5 cut(s)	66, 132, 141, 512, 840
BstF5I	GGATG	3 cut(s)	19, 34, 485
BstFNI	CGCG	2 cut(s)	212, 591
BstHHI	GCGC	2 cut(s)	212, 593
BstKTI	GATC	4 cut(s)	216, 343, 526, 817
BstMBI	GATC	4 cut(s)	213, 340, 523, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 137, 294
BstNI	CCWGG	2 cut(s)	185, 879
BstSCI	CCNGG	2 cut(s)	183, 877
BstSLI	GKGCMC	1 cut(s)	696
BstUI	CGCG	2 cut(s)	212, 591
BstV1I	GCAGC	6 cut(s)	121, 124, 200, 219, 241, 466
BstXI	CCANNNNNNTGG	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	19, 34, 485
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	4 cut(s)	386, 469, 666, 699
Cac8I	GCNNGC	1 cut(s)	725
CciI	TCATGA	2 cut(s)	496, 790
CfoI	GCGC	2 cut(s)	212, 593
Cfr13I	GGNCC	2 cut(s)	19, 94
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	4 cut(s)	106, 497, 689, 791
CviJI	RGCY	8 cut(s)	131, 140, 191, 368, 402, 457, 505, 519
CviKI_1	RGCY	8 cut(s)	131, 140, 191, 368, 402, 457, 505, 519
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	5 cut(s)	66, 132, 141, 512, 840
DpnI	GATC	4 cut(s)	215, 342, 525, 816
DpnII	GATC	4 cut(s)	213, 340, 523, 814
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	19, 94
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	183, 877
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	4 cut(s)	109, 500, 692, 794
FaqI	GGGAC	5 cut(s)	107, 166, 176, 785, 837
FatI	CATG	4 cut(s)	105, 496, 688, 790
Fnu4HI	GCNGC	6 cut(s)	110, 113, 189, 208, 255, 455
FokI	GGATG	3 cut(s)	26, 41, 472
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	6 cut(s)	110, 113, 189, 208, 255, 455
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	2 cut(s)	211, 592
GluI	GCNGC	6 cut(s)	110, 113, 189, 208, 255, 455
HaeIII	GGCC	1 cut(s)	368
HhaI	GCGC	2 cut(s)	212, 593
Hin1II	CATG	4 cut(s)	109, 500, 692, 794
Hin6I	GCGC	2 cut(s)	210, 591
HinP1I	GCGC	2 cut(s)	210, 591
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	400
HinfI	GANTC	4 cut(s)	7, 41, 332, 784
HphI	GGTGA	3 cut(s)	254, 587, 686
Hpy166II	GTNNAC	4 cut(s)	245, 355, 694, 742
Hpy188I	TCNGA	5 cut(s)	60, 538, 560, 712, 841
Hpy188III	TCNNGA	4 cut(s)	11, 317, 497, 791
Hpy8I	GTNNAC	4 cut(s)	245, 355, 694, 742
HpyCH4III	ACNGT	5 cut(s)	359, 381, 464, 637, 752
HpyCH4V	TGCA	9 cut(s)	4, 47, 109, 122, 413, 632, 651, 694, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 137, 294
HpyF3I	CTNAG	5 cut(s)	66, 132, 141, 512, 840
Hsp92II	CATG	4 cut(s)	109, 500, 692, 794
HspAI	GCGC	2 cut(s)	210, 591
Kzo9I	GATC	4 cut(s)	213, 340, 523, 814
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	6 cut(s)	121, 124, 200, 219, 241, 466
LweI	GCATC	2 cut(s)	494, 703
MaeI	CTAG	1 cut(s)	828
MaeIII	GTNAC	2 cut(s)	565, 881
MalI	GATC	4 cut(s)	215, 342, 525, 816
MboI	GATC	4 cut(s)	213, 340, 523, 814
MboII	GAAGA	4 cut(s)	283, 461, 689, 809
MhlI	GDGCHC	3 cut(s)	507, 696, 839
MluCI	AATT	2 cut(s)	123, 147
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	3 cut(s)	83, 201, 561
MnlI	CCTC	4 cut(s)	127, 130, 421, 580
Mph1103I	ATGCAT	1 cut(s)	718
MroXI	GAANNNNTTC	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	191, 457
MspR9I	CCNGG	2 cut(s)	185, 879
MvaI	CCWGG	2 cut(s)	185, 879
MvnI	CGCG	2 cut(s)	212, 591
MwoI	GCNNNNNNNGC	3 cut(s)	128, 137, 294
NdeII	GATC	4 cut(s)	213, 340, 523, 814
NlaIII	CATG	4 cut(s)	109, 500, 692, 794
NlaIV	GGNNCC	5 cut(s)	20, 95, 171, 518, 666
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	881
NsiI	ATGCAT	1 cut(s)	718
PagI	TCATGA	2 cut(s)	496, 790
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	3 cut(s)	7, 332, 784
PkrI	GCNGC	6 cut(s)	111, 114, 190, 209, 256, 456
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	183, 877
PspGI	CCWGG	2 cut(s)	183, 877
PspN4I	GGNNCC	5 cut(s)	20, 95, 171, 518, 666
PspPI	GGNCC	2 cut(s)	19, 94
PvuII	CAGCTG	2 cut(s)	191, 457
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
SacI	GAGCTC	1 cut(s)	507
SatI	GCNGC	6 cut(s)	110, 113, 189, 208, 255, 455
Sau3AI	GATC	4 cut(s)	213, 340, 523, 814
Sau96I	GGNCC	2 cut(s)	19, 94
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	185, 879
SduI	GDGCHC	3 cut(s)	507, 696, 839
SfaNI	GCATC	2 cut(s)	494, 703
SinI	GGWCC	2 cut(s)	19, 94
SmlI	CTYRAG	2 cut(s)	317, 449
SmoI	CTYRAG	2 cut(s)	317, 449
Sse9I	AATT	2 cut(s)	123, 147
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	828
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	183, 877
TaaI	ACNGT	5 cut(s)	359, 381, 464, 637, 752
TaqI	TCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	123, 147
TfiI	GAWTC	3 cut(s)	7, 332, 784
TscAI	CASTG	4 cut(s)	386, 469, 666, 706
TseFI	GTSAC	1 cut(s)	881
TseI	GCWGC	6 cut(s)	109, 112, 188, 207, 254, 454
Tsp45I	GTSAC	1 cut(s)	881
TspDTI	ATGAA	2 cut(s)	300, 495
TspGWI	ACGGA	2 cut(s)	598, 722
TspRI	CASTG	4 cut(s)	386, 469, 666, 706
VneI	GTGCAC	1 cut(s)	692
VpaK11BI	GGWCC	2 cut(s)	19, 94
XapI	RAATTY	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	1 cut(s)	828
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.