Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Reverse (-)

13701372 .. 13705503

Gene Structure 4132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007115

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTGTTATTCACTGAGACGCTGTTAGGTTTTAGATACAAACATGAGGAGAGCTATACTTTTTGGGAGCTTGCATTTCGTGGAACATGCGTGGTCTTGACAGTCCAGACGACGCCGTTTTCTCCCCAGACAATGCAGAATCAGGAAGGGCTTCAAGTGCAAGTGGATGGGGAAGTGGAGTCTGGGCCAGCCCCGTCGGTTGCAACACCTGACTTTGATGAGTGGGCAAGCTTTGGGGACCAGGATATCATGCAGCAGCACTCTGCCATTCGCGCCGAGGAGGCCGAGAAAATTCCCTTCCTGGGGGACAAGGAACCACTCTCGTCGCTGGCAGCTGAGTATCAATCAGGCAGCACTATTTTGTTGGAGAAAATAAAGGTTCTTGGTGAACAATATGCTGCCATTAGGAGAACCCGGGGCGACGGGAACTGCTTCTTCCGAAGCTTTATGTTTTCATACCTGGAGCATATTTTGGAATCACAAGATGTAAGTGAAGTTGATCGTATCAAGGCTAATGTTGAACAATGTAGAAAAACACTTCAGAGCTTGGGTTATGCAGACTTTACCTTTGAGGACTTCTTTTCGCTATTTCTTGAGCAACTGGATAGTGTTCTTCAAGGAAATGAAGAATCCATTAGTCATGATGAGCTCATACTTCGGAGCCGTGATCAGTCAGTATCTGACTATGTTGTGATGTTTTTCAGATTTGTTACCTCTGGTGAAATAAGGAAGCGCTCAGAGTTTTTTGAACCTTTTATATTGGGATTAACCAATGCAACCGTAGAGCAGTTTTGCAAGTCATCAGTGGAACCAATGGGTGAAGAAAGTGACCACGTGCACATCACTGCCCTGTCAGATGCACTGGGTGTGCCAATCCGTGTTGTGTACCTTGACCGCAGCTCATGTGATACTGGTGGTGTTAGCGTCACTATGATATTCTCTACCCGAAGTGATGCTCTCACCTGTTCCTGCAATTGTGAATGTCTGGGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

332

Amino Acids

37.34

Weight (kDa)

4.51

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C65	PF10275	94 - 304	1.7e-75	Peptidase C65 Otubain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	273
AciI	CCGC	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	524
AcvI	CACGTG	1 cut(s)	835
AcyI	GRCGYC	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	866
AfaI	GTAC	1 cut(s)	887
AfeI	AGCGCT	1 cut(s)	734
AfiI	CCNNNNNNNGG	2 cut(s)	302, 303
AgsI	TTSAA	4 cut(s)	155, 521, 617, 749
AjnI	CCWGG	3 cut(s)	240, 300, 459
AluBI	AGCT	8 cut(s)	54, 70, 231, 335, 444, 546, 649, 900
AluI	AGCT	8 cut(s)	54, 70, 231, 335, 444, 546, 649, 900
Alw21I	GWGCWC	2 cut(s)	651, 840
Alw26I	GTCTC	1 cut(s)	11
Alw44I	GTGCAC	1 cut(s)	836
AlwNI	CAGNNNCTG	1 cut(s)	680
Ama87I	CYCGRG	1 cut(s)	414
Aor51HI	AGCGCT	1 cut(s)	734
AoxI	GGCC	2 cut(s)	185, 282
ApaLI	GTGCAC	1 cut(s)	836
ApeKI	GCWGC	6 cut(s)	253, 256, 332, 351, 398, 897
ApoI	RAATTY	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
Asp700I	GAANNNNTTC	2 cut(s)	150, 431
AspLEI	GCGC	2 cut(s)	275, 735
AspS9I	GGNCC	2 cut(s)	185, 238
AsuC2I	CCSGG	2 cut(s)	415, 416
AsuHPI	GGTGA	4 cut(s)	398, 731, 830, 952
AvaI	CYCGRG	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	840
BanII	GRGCYC	1 cut(s)	651
BbrPI	CACGTG	1 cut(s)	835
Bbv12I	GWGCWC	2 cut(s)	651, 840
BbvI	GCAGC	6 cut(s)	265, 268, 344, 363, 385, 909
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	2 cut(s)	100, 648
BciT130I	CCWGG	3 cut(s)	242, 302, 461
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	2 cut(s)	415, 416
BcoDI	GTCTC	1 cut(s)	11
BfoI	RGCGCY	1 cut(s)	736
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	6 cut(s)	254, 257, 333, 352, 399, 898
BlsI	GCNGC	6 cut(s)	255, 258, 334, 353, 400, 899
Bme1390I	CCNGG	5 cut(s)	242, 302, 415, 416, 461
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	185, 238
BmiI	GGNNCC	4 cut(s)	239, 315, 662, 810
BmrFI	CCNGG	5 cut(s)	242, 302, 415, 416, 461
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	2 cut(s)	847, 943
BmuI	ACTGGG	1 cut(s)	872
BpmI	CTGGAG	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	2 cut(s)	415, 416
BsaAI	YACGTR	1 cut(s)	835
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	4 cut(s)	276, 301, 414, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 303
Bse1I	ACTGG	3 cut(s)	606, 867, 916
BseBI	CCWGG	3 cut(s)	242, 302, 461
BseDI	CCNNGG	4 cut(s)	276, 301, 414, 415
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	302, 303
BseMII	CTCAG	3 cut(s)	6, 327, 750
BseNI	ACTGG	3 cut(s)	606, 867, 916
BseRI	GAGGAG	2 cut(s)	62, 293
BseSI	GKGCMC	1 cut(s)	840
BseXI	GCAGC	6 cut(s)	265, 268, 344, 363, 385, 909
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	187, 284
BsiHKAI	GWGCWC	2 cut(s)	651, 840
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	415
BslFI	GGGAC	2 cut(s)	251, 320
BslI	CCNNNNNNNGG	2 cut(s)	302, 303
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	2 cut(s)	251, 320
BsnI	GGCC	2 cut(s)	187, 284
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	651, 840
Bsp143I	GATC	2 cut(s)	499, 667
BspACI	CCGC	1 cut(s)	895
BspANI	GGCC	2 cut(s)	187, 284
BspCNI	CTCAG	3 cut(s)	7, 328, 749
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	4 cut(s)	239, 315, 662, 810
BsrI	ACTGG	3 cut(s)	606, 867, 916
BssECI	CCNNGG	4 cut(s)	276, 301, 414, 415
BssMI	GATC	2 cut(s)	499, 667
BssNI	GRCGYC	1 cut(s)	113
Bst2UI	CCWGG	3 cut(s)	242, 302, 461
Bst4CI	ACNGT	2 cut(s)	103, 781
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	4 cut(s)	72, 189, 229, 330
BstDEI	CTNAG	3 cut(s)	15, 336, 736
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	736
BstHHI	GCGC	2 cut(s)	275, 735
BstKTI	GATC	2 cut(s)	502, 670
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	499, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 272, 281
BstNI	CCWGG	3 cut(s)	242, 302, 461
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	5 cut(s)	240, 300, 413, 414, 459
BstSLI	GKGCMC	1 cut(s)	840
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	6 cut(s)	265, 268, 344, 363, 385, 909
BsuRI	GGCC	2 cut(s)	187, 284
BtsCI	GGATG	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	4 cut(s)	12, 810, 843, 860
Cac8I	GCNNGC	4 cut(s)	72, 189, 229, 330
CaiI	CAGNNNCTG	1 cut(s)	680
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	2 cut(s)	275, 735
Cfr13I	GGNCC	2 cut(s)	185, 238
Cfr9I	CCCGGG	1 cut(s)	414
CseI	GACGC	3 cut(s)	28, 121, 913
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	5 cut(s)	44, 87, 250, 641, 903
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	3 cut(s)	15, 336, 736
DpnI	GATC	2 cut(s)	501, 669
DpnII	GATC	2 cut(s)	499, 667
DraIII	CACNNNGTG	1 cut(s)	866
Ecl136II	GAGCTC	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	238
Eco47III	AGCGCT	1 cut(s)	734
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	524
Eco72I	CACGTG	1 cut(s)	835
Eco88I	CYCGRG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	649
EcoRII	CCWGG	3 cut(s)	240, 300, 459
EcoRV	GATATC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	651
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	5 cut(s)	47, 90, 253, 644, 906
FaqI	GGGAC	2 cut(s)	251, 320
FatI	CATG	5 cut(s)	43, 86, 249, 640, 902
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	6 cut(s)	254, 257, 333, 352, 399, 898
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	6 cut(s)	254, 257, 333, 352, 399, 898
GlaI	GCGC	2 cut(s)	274, 734
GluI	GCNGC	6 cut(s)	254, 257, 333, 352, 399, 898
GsuI	CTGGAG	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	736
HaeIII	GGCC	2 cut(s)	187, 284
HapII	CCGG	1 cut(s)	415
HgaI	GACGC	3 cut(s)	28, 121, 913
HhaI	GCGC	2 cut(s)	275, 735
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	5 cut(s)	47, 90, 253, 644, 906
Hin6I	GCGC	2 cut(s)	273, 733
HinP1I	GCGC	2 cut(s)	273, 733
HindIII	AAGCTT	2 cut(s)	229, 442
HinfI	GANTC	4 cut(s)	139, 179, 476, 629
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	4 cut(s)	398, 731, 830, 952
Hpy166II	GTNNAC	3 cut(s)	389, 838, 886
Hpy188I	TCNGA	7 cut(s)	440, 543, 660, 682, 704, 739, 856
Hpy188III	TCNNGA	5 cut(s)	97, 106, 143, 593, 641
Hpy8I	GTNNAC	3 cut(s)	389, 838, 886
Hpy99I	CGWCG	4 cut(s)	115, 199, 328, 425
HpyAV	CCTTC	2 cut(s)	140, 307
HpyCH4III	ACNGT	2 cut(s)	103, 781
HpyCH4IV	ACGT	1 cut(s)	834
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 272, 281
HpyF3I	CTNAG	3 cut(s)	15, 336, 736
HpySE526I	ACGT	1 cut(s)	834
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	47, 90, 253, 644, 906
HspAI	GCGC	2 cut(s)	273, 733
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	499, 667
LmnI	GCTCC	3 cut(s)	67, 463, 660
Lsp1109I	GCAGC	6 cut(s)	265, 268, 344, 363, 385, 909
LweI	GCATC	2 cut(s)	847, 943
MaeII	ACGT	1 cut(s)	834
MaeIII	GTNAC	3 cut(s)	709, 827, 925
MalI	GATC	2 cut(s)	501, 669
MboI	GATC	2 cut(s)	499, 667
MboII	GAAGA	4 cut(s)	427, 605, 638, 833
MfeI	CAATTG	1 cut(s)	973
MhlI	GDGCHC	2 cut(s)	651, 840
MluCI	AATT	2 cut(s)	291, 973
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	5 cut(s)	40, 271, 274, 565, 724
MroXI	GAANNNNTTC	2 cut(s)	150, 431
MseI	TTAA	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	5 cut(s)	242, 302, 415, 416, 461
MunI	CAATTG	1 cut(s)	973
MvaI	CCWGG	3 cut(s)	242, 302, 461
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	157, 272, 281
NciI	CCSGG	2 cut(s)	415, 416
NdeII	GATC	2 cut(s)	499, 667
NlaIII	CATG	5 cut(s)	47, 90, 253, 644, 906
NlaIV	GGNNCC	4 cut(s)	239, 315, 662, 810
NmeAIII	GCCGAG	2 cut(s)	301, 310
NmuCI	GTSAC	2 cut(s)	827, 925
NspI	RCATGY	1 cut(s)	90
PagI	TCATGA	1 cut(s)	640
PdmI	GAANNNNTTC	2 cut(s)	150, 431
PfeI	GAWTC	3 cut(s)	139, 476, 629
PkrI	GCNGC	6 cut(s)	255, 258, 334, 353, 400, 899
PleI	GAGTC	1 cut(s)	187
PmaCI	CACGTG	1 cut(s)	835
PmlI	CACGTG	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	835
Psp124BI	GAGCTC	1 cut(s)	651
Psp6I	CCWGG	3 cut(s)	240, 300, 459
PspCI	CACGTG	1 cut(s)	835
PspGI	CCWGG	3 cut(s)	240, 300, 459
PspN4I	GGNNCC	4 cut(s)	239, 315, 662, 810
PspPI	GGNCC	2 cut(s)	185, 238
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	1 cut(s)	767
SatI	GCNGC	6 cut(s)	254, 257, 333, 352, 399, 898
Sau3AI	GATC	2 cut(s)	499, 667
Sau96I	GGNCC	2 cut(s)	185, 238
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	5 cut(s)	242, 302, 415, 416, 461
SduI	GDGCHC	2 cut(s)	651, 840
SfaNI	GCATC	2 cut(s)	847, 943
SinI	GGWCC	1 cut(s)	238
SmaI	CCCGGG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	2 cut(s)	291, 973
SsiI	CCGC	1 cut(s)	895
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	5 cut(s)	240, 300, 413, 414, 459
TaaI	ACNGT	2 cut(s)	103, 781
TaiI	ACGT	1 cut(s)	837
TasI	AATT	2 cut(s)	291, 973
TfiI	GAWTC	3 cut(s)	139, 476, 629
Tru1I	TTAA	1 cut(s)	767
Tru9I	TTAA	1 cut(s)	767
TscAI	CASTG	4 cut(s)	19, 810, 850, 867
TseFI	GTSAC	2 cut(s)	827, 925
TseI	GCWGC	6 cut(s)	253, 256, 332, 351, 398, 897
Tsp45I	GTSAC	2 cut(s)	827, 925
TspDTI	ATGAA	2 cut(s)	444, 639
TspGWI	ACGGA	1 cut(s)	866
TspMI	CCCGGG	1 cut(s)	414
TspRI	CASTG	4 cut(s)	19, 810, 850, 867
VneI	GTGCAC	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	1 cut(s)	90
XmaI	CCCGGG	1 cut(s)	414
XmnI	GAANNNNTTC	2 cut(s)	150, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.