Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008612.1

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Forward (+)

40873 .. 44794

Gene Structure 3922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008612.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgaggattacatatcaagaagaggactatcttttgctcaagggttcgctttggtcatgctatttgcggctcgtgaactttgttaccgttatgactgcgcaccgcgggaccttccaaagtcttcatcgcaaaagacccagagagagagagcgccaccccatttttccaagtcgatcccaacgcccagtccagacgaccccgttttctccccagacaatgcagaatcaggaagggcttcaagtgcaagtggatggggaagtggagtctgggccagccccctcggttgcaacacctgactttgatgagtgggcaagctttggggaccaggatatcatgcagcagcactctgccattcgcgccgaggaggccgagaaaatccccttcctgggggacaaggaaccactctcgtcgctggcagctgagtatcaatcaggcagcgctattttgttggagaaaattaaggttcttggtgaacaatatgctgccattaggagaacccggggcgacgggaactgcttcttccgaagctttatgttttcatacctggagcatattttggaatcacaagatgtaagtgaagttgatcgtatcaaggctaatgttgaacaatgtagaaaaacacttcagagcttgggttatacagactttacctttgaggacttcttttcactatttcttgagcaactggatagtgttcttcaaggaaatgaagaatccattagtcatgatgagctcatacttcggagccgtgatcagtcagtatccgactatgttgtgatgtttttcagatttgttacctctggtgaaataaggaagcgctcagagttttttgaaccttttatattgggattaaccaatgcaaccgtagagcagttttgcaagtcatcagtggaaccaatgggtgaagaaagtgaccacgtgcacatcactgccctgtcagatgcactgggtgtgccaatccgtgttgtgtaccttgaccgcagctcatgtgatactggtggtgtcactacgatattctctacccgaagtgatgctctctcctgttcctgcaattgtgaatgtctgggttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

357

Amino Acids

40.6

Weight (kDa)

4.92

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	99
AccII	CGCG	2 cut(s)	105, 357
AciI	CCGC	4 cut(s)	67, 103, 105, 979
AclWI	GGATC	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	608
AcvI	CACGTG	1 cut(s)	919
AdeI	CACNNNGTG	1 cut(s)	950
AfaI	GTAC	1 cut(s)	971
AfeI	AGCGCT	2 cut(s)	439, 818
AfiI	CCNNNNNNNGG	3 cut(s)	385, 386, 387
AgsI	TTSAA	4 cut(s)	239, 605, 701, 833
AjnI	CCWGG	3 cut(s)	324, 384, 543
AluBI	AGCT	6 cut(s)	315, 419, 528, 630, 733, 984
AluI	AGCT	6 cut(s)	315, 419, 528, 630, 733, 984
Alw21I	GWGCWC	2 cut(s)	735, 924
Alw44I	GTGCAC	1 cut(s)	920
AlwI	GGATC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	498
Aor51HI	AGCGCT	2 cut(s)	439, 818
AoxI	GGCC	2 cut(s)	269, 366
ApaLI	GTGCAC	1 cut(s)	920
ApeKI	GCWGC	6 cut(s)	337, 340, 416, 435, 482, 981
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
Asp700I	GAANNNNTTC	2 cut(s)	234, 515
AspLEI	GCGC	5 cut(s)	100, 153, 359, 440, 819
AspS9I	GGNCC	3 cut(s)	108, 269, 322
AsuC2I	CCSGG	2 cut(s)	499, 500
AsuHPI	GGTGA	3 cut(s)	482, 815, 914
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	2 cut(s)	108, 322
BaeGI	GKGCMC	1 cut(s)	924
BanII	GRGCYC	1 cut(s)	735
BauI	CACGAG	1 cut(s)	71
BbrPI	CACGTG	1 cut(s)	919
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	2 cut(s)	735, 924
BbvI	GCAGC	6 cut(s)	349, 352, 428, 447, 469, 993
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	732
BciT130I	CCWGG	3 cut(s)	326, 386, 545
BciVI	GTATCC	1 cut(s)	772
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	2 cut(s)	499, 500
BfoI	RGCGCY	3 cut(s)	154, 441, 820
BfuI	GTATCC	1 cut(s)	772
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	7 cut(s)	68, 338, 341, 417, 436, 483, 982
BlsI	GCNGC	7 cut(s)	69, 339, 342, 418, 437, 484, 983
Bme1390I	CCNGG	5 cut(s)	326, 386, 499, 500, 545
Bme18I	GGWCC	2 cut(s)	108, 322
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	3 cut(s)	108, 269, 322
BmiI	GGNNCC	5 cut(s)	109, 323, 399, 746, 894
BmrFI	CCNGG	5 cut(s)	326, 386, 499, 500, 545
BmrI	ACTGGG	2 cut(s)	179, 956
BmsI	GCATC	2 cut(s)	931, 1021
BmuI	ACTGGG	2 cut(s)	179, 956
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	23, 698
BpuMI	CCSGG	2 cut(s)	499, 500
BsaAI	YACGTR	1 cut(s)	919
BsaJI	CCNNGG	6 cut(s)	103, 279, 360, 385, 498, 499
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 386, 387
Bse1I	ACTGG	4 cut(s)	185, 690, 951, 1000
BseBI	CCWGG	3 cut(s)	326, 386, 545
BseDI	CCNNGG	6 cut(s)	103, 279, 360, 385, 498, 499
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	3 cut(s)	385, 386, 387
BseMII	CTCAG	2 cut(s)	411, 834
BseNI	ACTGG	4 cut(s)	185, 690, 951, 1000
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	924
BseXI	GCAGC	6 cut(s)	349, 352, 428, 447, 469, 993
Bsh1236I	CGCG	2 cut(s)	105, 357
BshFI	GGCC	2 cut(s)	271, 368
BsiHKAI	GWGCWC	2 cut(s)	735, 924
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	499
BslFI	GGGAC	3 cut(s)	121, 335, 404
BslI	CCNNNNNNNGG	3 cut(s)	385, 386, 387
BsmFI	GGGAC	3 cut(s)	121, 335, 404
BsnI	GGCC	2 cut(s)	271, 368
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	735, 924
Bsp143I	GATC	3 cut(s)	173, 583, 751
BspACI	CCGC	4 cut(s)	67, 103, 105, 979
BspANI	GGCC	2 cut(s)	271, 368
BspCNI	CTCAG	2 cut(s)	412, 833
BspFNI	CGCG	2 cut(s)	105, 357
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	5 cut(s)	109, 323, 399, 746, 894
BspPI	GGATC	1 cut(s)	168
BsrI	ACTGG	4 cut(s)	185, 690, 951, 1000
BssECI	CCNNGG	6 cut(s)	103, 279, 360, 385, 498, 499
BssMI	GATC	3 cut(s)	173, 583, 751
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	3 cut(s)	326, 386, 545
Bst4CI	ACNGT	2 cut(s)	88, 865
Bst6I	CTCTTC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	919
BstC8I	GCNNGC	3 cut(s)	273, 313, 414
BstDEI	CTNAG	2 cut(s)	420, 820
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	2 cut(s)	105, 357
BstH2I	RGCGCY	3 cut(s)	154, 441, 820
BstHHI	GCGC	5 cut(s)	100, 153, 359, 440, 819
BstKTI	GATC	3 cut(s)	176, 586, 754
BstMBI	GATC	3 cut(s)	173, 583, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 356, 365
BstNI	CCWGG	3 cut(s)	326, 386, 545
BstSCI	CCNGG	5 cut(s)	324, 384, 497, 498, 543
BstSLI	GKGCMC	1 cut(s)	924
BstUI	CGCG	2 cut(s)	105, 357
BstV1I	GCAGC	6 cut(s)	349, 352, 428, 447, 469, 993
BstV2I	GAAGAC	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	772
BsuRI	GGCC	2 cut(s)	271, 368
BtgI	CCRYGG	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	3 cut(s)	894, 927, 944
Cac8I	GCNNGC	3 cut(s)	273, 313, 414
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	5 cut(s)	100, 153, 359, 440, 819
Cfr13I	GGNCC	3 cut(s)	108, 269, 322
Cfr42I	CCGCGG	1 cut(s)	106
Cfr9I	CCCGGG	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	970
CviAII	CATG	4 cut(s)	57, 334, 725, 987
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	2 cut(s)	420, 820
DpnI	GATC	3 cut(s)	175, 585, 753
DpnII	GATC	3 cut(s)	173, 583, 751
DraIII	CACNNNGTG	1 cut(s)	950
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	735
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	108, 322
Eco47III	AGCGCT	2 cut(s)	439, 818
Eco53kI	GAGCTC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	608
Eco72I	CACGTG	1 cut(s)	919
Eco88I	CYCGRG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	3 cut(s)	324, 384, 543
EcoRV	GATATC	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	735
FaeI	CATG	4 cut(s)	60, 337, 728, 990
FaqI	GGGAC	3 cut(s)	121, 335, 404
FatI	CATG	4 cut(s)	56, 333, 724, 986
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	7 cut(s)	68, 338, 341, 417, 436, 483, 982
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	7 cut(s)	68, 338, 341, 417, 436, 483, 982
FspI	TGCGCA	1 cut(s)	99
GlaI	GCGC	5 cut(s)	99, 152, 358, 439, 818
GluI	GCNGC	7 cut(s)	68, 338, 341, 417, 436, 483, 982
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	3 cut(s)	154, 441, 820
HaeIII	GGCC	2 cut(s)	271, 368
HapII	CCGG	1 cut(s)	499
HhaI	GCGC	5 cut(s)	100, 153, 359, 440, 819
Hin1II	CATG	4 cut(s)	60, 337, 728, 990
Hin6I	GCGC	5 cut(s)	98, 151, 357, 438, 817
HinP1I	GCGC	5 cut(s)	98, 151, 357, 438, 817
HindIII	AAGCTT	2 cut(s)	313, 526
HinfI	GANTC	4 cut(s)	223, 263, 560, 713
HpaII	CCGG	1 cut(s)	499
HphI	GGTGA	3 cut(s)	482, 815, 914
Hpy166II	GTNNAC	4 cut(s)	76, 473, 922, 970
Hpy188I	TCNGA	7 cut(s)	524, 627, 744, 766, 788, 823, 940
Hpy188III	TCNNGA	6 cut(s)	17, 73, 190, 227, 677, 725
Hpy8I	GTNNAC	4 cut(s)	76, 473, 922, 970
Hpy99I	CGWCG	2 cut(s)	412, 509
HpyAV	CCTTC	3 cut(s)	121, 224, 391
HpyCH4III	ACNGT	2 cut(s)	88, 865
HpyCH4IV	ACGT	1 cut(s)	918
HpyCH4V	TGCA	9 cut(s)	220, 244, 287, 337, 860, 879, 922, 944, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 356, 365
HpyF3I	CTNAG	2 cut(s)	420, 820
HpySE526I	ACGT	1 cut(s)	918
Hsp92II	CATG	4 cut(s)	60, 337, 728, 990
HspAI	GCGC	5 cut(s)	98, 151, 357, 438, 817
Ksp22I	TGATCA	1 cut(s)	751
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	173, 583, 751
LmnI	GCTCC	2 cut(s)	547, 744
Lsp1109I	GCAGC	6 cut(s)	349, 352, 428, 447, 469, 993
LweI	GCATC	2 cut(s)	931, 1021
MaeII	ACGT	1 cut(s)	918
MaeIII	GTNAC	4 cut(s)	82, 793, 911, 1003
MalI	GATC	3 cut(s)	175, 585, 753
MboI	GATC	3 cut(s)	173, 583, 751
MboII	GAAGA	6 cut(s)	32, 113, 511, 689, 722, 917
MfeI	CAATTG	1 cut(s)	1051
MhlI	GDGCHC	2 cut(s)	735, 924
MluCI	AATT	2 cut(s)	456, 1051
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	429, 789
MnlI	CCTC	6 cut(s)	16, 289, 355, 358, 649, 808
MroXI	GAANNNNTTC	2 cut(s)	234, 515
MseI	TTAA	2 cut(s)	459, 851
MspA1I	CMGCKG	2 cut(s)	105, 419
MspI	CCGG	1 cut(s)	499
MspR9I	CCNGG	5 cut(s)	326, 386, 499, 500, 545
MunI	CAATTG	1 cut(s)	1051
MvaI	CCWGG	3 cut(s)	326, 386, 545
MvnI	CGCG	2 cut(s)	105, 357
MwoI	GCNNNNNNNGC	3 cut(s)	241, 356, 365
NciI	CCSGG	2 cut(s)	499, 500
NdeII	GATC	3 cut(s)	173, 583, 751
NlaIII	CATG	4 cut(s)	60, 337, 728, 990
NlaIV	GGNNCC	5 cut(s)	109, 323, 399, 746, 894
NmeAIII	GCCGAG	2 cut(s)	385, 394
NmuCI	GTSAC	2 cut(s)	911, 1003
NsbI	TGCGCA	1 cut(s)	99
PagI	TCATGA	1 cut(s)	724
PdmI	GAANNNNTTC	2 cut(s)	234, 515
PfeI	GAWTC	3 cut(s)	223, 560, 713
PkrI	GCNGC	7 cut(s)	69, 339, 342, 418, 437, 484, 983
PleI	GAGTC	1 cut(s)	271
PmaCI	CACGTG	1 cut(s)	919
PmlI	CACGTG	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	919
PpuMI	RGGWCCY	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	3 cut(s)	324, 384, 543
PspCI	CACGTG	1 cut(s)	919
PspGI	CCWGG	3 cut(s)	324, 384, 543
PspN4I	GGNNCC	5 cut(s)	109, 323, 399, 746, 894
PspPI	GGNCC	3 cut(s)	108, 269, 322
PspPPI	RGGWCCY	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
SacI	GAGCTC	1 cut(s)	735
SacII	CCGCGG	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	459, 851
SatI	GCNGC	7 cut(s)	68, 338, 341, 417, 436, 483, 982
Sau3AI	GATC	3 cut(s)	173, 583, 751
Sau96I	GGNCC	3 cut(s)	108, 269, 322
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	5 cut(s)	326, 386, 499, 500, 545
SduI	GDGCHC	2 cut(s)	735, 924
SfaNI	GCATC	2 cut(s)	931, 1021
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SinI	GGWCC	2 cut(s)	108, 322
SmaI	CCCGGG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	38, 677
SmoI	CTYRAG	2 cut(s)	38, 677
Sse9I	AATT	2 cut(s)	456, 1051
SsiI	CCGC	4 cut(s)	67, 103, 105, 979
SstI	GAGCTC	1 cut(s)	735
StyD4I	CCNGG	5 cut(s)	324, 384, 497, 498, 543
TaaI	ACNGT	2 cut(s)	88, 865
TaiI	ACGT	1 cut(s)	921
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	456, 1051
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	223, 560, 713
Tru1I	TTAA	2 cut(s)	459, 851
Tru9I	TTAA	2 cut(s)	459, 851
TscAI	CASTG	3 cut(s)	894, 934, 951
TseFI	GTSAC	2 cut(s)	911, 1003
TseI	GCWGC	6 cut(s)	337, 340, 416, 435, 482, 981
Tsp45I	GTSAC	2 cut(s)	911, 1003
TspDTI	ATGAA	3 cut(s)	113, 528, 723
TspGWI	ACGGA	1 cut(s)	950
TspMI	CCCGGG	1 cut(s)	498
TspRI	CASTG	3 cut(s)	894, 934, 951
VneI	GTGCAC	1 cut(s)	920
VpaK11BI	GGWCC	2 cut(s)	108, 322
XmaI	CCCGGG	1 cut(s)	498
XmnI	GAANNNNTTC	2 cut(s)	234, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.