Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Forward (+)

25389970 .. 25393420

Gene Structure 3451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCAGAATCAGGAAGGGCTTCAAGTACAAGTGGATGGGGAAGTGGAATCTGGGCCGGCCCCCTCGGTTGCTACACCTGAGGTTGATGAGTGGCCAAGCTTTGGTGACCAGGATATCATGCAGCAGCACTCTGCCATTCGTGCCGAGGAGGCTGAGAAAATTCCCTTCCTCGGGGACAAGGAGCCACTATCGTCGCTGGCAGCTGAGTATCAATCAGGCAGCGCTATCTTGTTGGAGAAGATAAAGGTTTTTACGGTCATGCAGGTTCTTGGTGAACAATATGCTGCTATTCGGAGAACCCGGGGAGATGGGAACTGCTTCTTTCGAAGCTTTATGTTTTCATACCTGGAGCATATTTTGGAATCACAAGATGTAAGTGAAGTCGATCGTATCAAGGGTAATGTTGAACAATGTAGAAAAACCCTTCAGAGCTTGGGTTACGCAGACTTTACTTTTGAGGACTTCTTTTCGTTATTCCTTGAGCAGCTGGATAGTGTTCTTCAAGGAAGTGAAGAATCCATAAGTCATGATGAGCTCATACTAAGGAGCCGTGATCAGTCAGTATCCGACTATGTTGTGATGTTTTTCAGATTTGTTACCTCCGGTGAAATAAGGAAGCGCTCAGAGTTTTTTGAACCCTTTATATTGGGATTAACCAATGCAACCGTAGAGCAGTTTTGCAAGTCATCTGTGGAACCAATGGGTGAAGAAAGTGACCACGTGCACATCACTGCCCTGTCAGATGCACTGGGCGTGCCAATCCGTGTTGTGTATCTTGACCGTAGCTCATGTGATTCTGGTGGTGTTAGCGTGAATCATCACGATTTCGTTCCTACTGGCAATGATCTGCCAAATGCTAGTGGTAGCTCTGAGAAAGTTAGTCCTTTTATCACCTTGCTATATCGCCCAGGTCACTATGATATTCTCTACCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

313

Amino Acids

34.94

Weight (kDa)

4.58

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C65	PF10275	50 - 311	1e-87	Peptidase C65 Otubain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	410
AcvI	CACGTG	1 cut(s)	721
AfaI	GTAC	1 cut(s)	27
AfeI	AGCGCT	2 cut(s)	223, 620
AfiI	CCNNNNNNNGG	3 cut(s)	101, 170, 171
AgsI	TTSAA	4 cut(s)	23, 407, 503, 635
AjnI	CCWGG	3 cut(s)	108, 345, 907
AluBI	AGCT	8 cut(s)	99, 203, 330, 432, 487, 535, 786, 867
AluI	AGCT	8 cut(s)	99, 203, 330, 432, 487, 535, 786, 867
Alw21I	GWGCWC	2 cut(s)	537, 726
Alw44I	GTGCAC	1 cut(s)	722
Ama87I	CYCGRG	2 cut(s)	170, 300
Aor51HI	AGCGCT	2 cut(s)	223, 620
AoxI	GGCC	3 cut(s)	53, 57, 92
ApaLI	GTGCAC	1 cut(s)	722
ApeKI	GCWGC	6 cut(s)	121, 124, 200, 219, 284, 484
ApoI	RAATTY	1 cut(s)	159
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
Asp700I	GAANNNNTTC	2 cut(s)	18, 317
AspLEI	GCGC	2 cut(s)	224, 621
AspS9I	GGNCC	2 cut(s)	53, 58
AsuC2I	CCSGG	2 cut(s)	301, 302
AsuHPI	GGTGA	5 cut(s)	116, 284, 617, 716, 883
AsuII	TTCGAA	1 cut(s)	325
AvaI	CYCGRG	2 cut(s)	170, 300
AxyI	CCTNAGG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	726
BalI	TGGCCA	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	721
Bbv12I	GWGCWC	2 cut(s)	537, 726
BbvI	GCAGC	6 cut(s)	133, 136, 212, 231, 271, 496
BccI	CCATC	2 cut(s)	29, 302
BceAI	ACGGC	1 cut(s)	534
BciT130I	CCWGG	3 cut(s)	110, 347, 909
BciVI	GTATCC	1 cut(s)	574
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	2 cut(s)	301, 302
BfaI	CTAG	1 cut(s)	858
BfoI	RGCGCY	2 cut(s)	225, 622
BfuAI	ACCTGC	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	6 cut(s)	122, 125, 201, 220, 285, 485
BlsI	GCNGC	6 cut(s)	123, 126, 202, 221, 286, 486
Bme1390I	CCNGG	5 cut(s)	110, 301, 302, 347, 909
BmeT110I	CYCGRG	2 cut(s)	170, 300
BmgT120I	GGNCC	2 cut(s)	53, 58
BmiI	GGNNCC	4 cut(s)	60, 183, 548, 696
BmrFI	CCNGG	5 cut(s)	110, 301, 302, 347, 909
BmrI	ACTGGG	1 cut(s)	758
BmsI	GCATC	1 cut(s)	733
BmuI	ACTGGG	1 cut(s)	758
BpmI	CTGGAG	1 cut(s)	368
Bpu14I	TTCGAA	1 cut(s)	325
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	301, 302
BsaAI	YACGTR	1 cut(s)	721
BsaJI	CCNNGG	6 cut(s)	63, 144, 169, 300, 301, 907
BsaWI	WCCGGW	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 170, 171
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	753, 841
Bse21I	CCTNAGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	847
BseBI	CCWGG	3 cut(s)	110, 347, 909
BseDI	CCNNGG	6 cut(s)	63, 144, 169, 300, 301, 907
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	3 cut(s)	101, 170, 171
BseMI	GCAATG	1 cut(s)	847
BseMII	CTCAG	5 cut(s)	69, 144, 195, 636, 861
BseNI	ACTGG	2 cut(s)	753, 841
BseRI	GAGGAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	6 cut(s)	133, 136, 212, 231, 271, 496
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	55, 59, 94
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	2 cut(s)	537, 726
BsiHKCI	CYCGRG	2 cut(s)	170, 300
BsiSI	CCGG	3 cut(s)	56, 301, 603
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	101, 170, 171
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	55, 59, 94
BsoBI	CYCGRG	2 cut(s)	170, 300
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	537, 726
Bsp143I	GATC	3 cut(s)	385, 553, 844
BspANI	GGCC	3 cut(s)	55, 59, 94
BspCNI	CTCAG	5 cut(s)	70, 145, 196, 635, 862
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	60, 183, 548, 696
BspMI	ACCTGC	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	847
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	753, 841
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	6 cut(s)	63, 144, 169, 300, 301, 907
BssMI	GATC	3 cut(s)	385, 553, 844
Bst2UI	CCWGG	3 cut(s)	110, 347, 909
Bst4CI	ACNGT	3 cut(s)	256, 667, 782
BstBAI	YACGTR	1 cut(s)	721
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	57, 198, 755
BstDEI	CTNAG	6 cut(s)	78, 153, 204, 542, 622, 870
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	40
BstH2I	RGCGCY	2 cut(s)	225, 622
BstHHI	GCGC	2 cut(s)	224, 621
BstKTI	GATC	3 cut(s)	388, 556, 847
BstMBI	GATC	3 cut(s)	385, 553, 844
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 149
BstNI	CCWGG	3 cut(s)	110, 347, 909
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	5 cut(s)	108, 299, 300, 345, 907
BstSLI	GKGCMC	1 cut(s)	726
BstV1I	GCAGC	6 cut(s)	133, 136, 212, 231, 271, 496
Bsu36I	CCTNAGG	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	55, 59, 94
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	2 cut(s)	729, 746
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	57, 198, 755
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	2 cut(s)	224, 621
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	53, 58
Cfr9I	CCCGGG	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	4 cut(s)	118, 259, 527, 789
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	6 cut(s)	78, 153, 204, 542, 622, 870
DpnI	GATC	3 cut(s)	387, 555, 846
DpnII	GATC	3 cut(s)	385, 553, 844
EaeI	YGGCCR	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	537
Eco32I	GATATC	1 cut(s)	115
Eco47III	AGCGCT	2 cut(s)	223, 620
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	410
Eco72I	CACGTG	1 cut(s)	721
Eco81I	CCTNAGG	1 cut(s)	78
Eco88I	CYCGRG	2 cut(s)	170, 300
Eco91I	GGTNACC	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	3 cut(s)	108, 345, 907
EcoRV	GATATC	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	537
FaeI	CATG	4 cut(s)	121, 262, 530, 792
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	4 cut(s)	117, 258, 526, 788
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	6 cut(s)	122, 125, 201, 220, 285, 485
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	537
FseI	GGCCGGCC	1 cut(s)	59
Fsp4HI	GCNGC	6 cut(s)	122, 125, 201, 220, 285, 485
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	2 cut(s)	223, 620
GluI	GCNGC	6 cut(s)	122, 125, 201, 220, 285, 485
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	2 cut(s)	225, 622
HaeIII	GGCC	3 cut(s)	55, 59, 94
HapII	CCGG	3 cut(s)	56, 301, 603
HhaI	GCGC	2 cut(s)	224, 621
Hin1II	CATG	4 cut(s)	121, 262, 530, 792
Hin6I	GCGC	2 cut(s)	222, 619
HinP1I	GCGC	2 cut(s)	222, 619
HindIII	AAGCTT	2 cut(s)	97, 328
HinfI	GANTC	6 cut(s)	7, 47, 362, 515, 794, 814
HpaII	CCGG	3 cut(s)	56, 301, 603
HphI	GGTGA	5 cut(s)	116, 284, 617, 716, 883
Hpy166II	GTNNAC	2 cut(s)	275, 724
Hpy188I	TCNGA	7 cut(s)	294, 429, 568, 590, 625, 742, 871
Hpy188III	TCNNGA	4 cut(s)	11, 527, 776, 821
Hpy8I	GTNNAC	2 cut(s)	275, 724
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	8, 175, 434
HpyCH4III	ACNGT	3 cut(s)	256, 667, 782
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	7 cut(s)	4, 121, 262, 662, 681, 724, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 149
HpyF3I	CTNAG	6 cut(s)	78, 153, 204, 542, 622, 870
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	4 cut(s)	121, 262, 530, 792
HspAI	GCGC	2 cut(s)	222, 619
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	385, 553, 844
LmnI	GCTCC	3 cut(s)	181, 349, 546
Lsp1109I	GCAGC	6 cut(s)	133, 136, 212, 231, 271, 496
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	5 cut(s)	104, 437, 595, 713, 911
MalI	GATC	3 cut(s)	387, 555, 846
MboI	GATC	3 cut(s)	385, 553, 844
MboII	GAAGA	4 cut(s)	250, 491, 524, 719
MhlI	GDGCHC	2 cut(s)	537, 726
MlsI	TGGCCA	1 cut(s)	94
MluCI	AATT	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	94
MmeI	TCCRAC	2 cut(s)	213, 591
MnlI	CCTC	7 cut(s)	73, 73, 139, 142, 179, 451, 610
Mox20I	TGGCCA	1 cut(s)	94
MroNI	GCCGGC	1 cut(s)	55
MroXI	GAANNNNTTC	2 cut(s)	18, 317
MscI	TGGCCA	1 cut(s)	94
MseI	TTAA	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	94
MspA1I	CMGCKG	2 cut(s)	203, 487
MspI	CCGG	3 cut(s)	56, 301, 603
MspR9I	CCNGG	5 cut(s)	110, 301, 302, 347, 909
MvaI	CCWGG	3 cut(s)	110, 347, 909
MwoI	GCNNNNNNNGC	2 cut(s)	140, 149
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	301, 302
NdeII	GATC	3 cut(s)	385, 553, 844
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	4 cut(s)	121, 262, 530, 792
NlaIV	GGNNCC	4 cut(s)	60, 183, 548, 696
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	3 cut(s)	104, 713, 911
NspV	TTCGAA	1 cut(s)	325
PagI	TCATGA	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	57
PdmI	GAANNNNTTC	2 cut(s)	18, 317
PfeI	GAWTC	6 cut(s)	7, 47, 362, 515, 794, 814
PflMI	CCANNNNNTGG	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	123, 126, 202, 221, 286, 486
Ple19I	CGATCG	1 cut(s)	388
PmaCI	CACGTG	1 cut(s)	721
PmlI	CACGTG	1 cut(s)	721
Ppu21I	YACGTR	1 cut(s)	721
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	3 cut(s)	108, 345, 907
PspCI	CACGTG	1 cut(s)	721
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	3 cut(s)	108, 345, 907
PspN4I	GGNNCC	4 cut(s)	60, 183, 548, 696
PspPI	GGNCC	2 cut(s)	53, 58
PvuI	CGATCG	1 cut(s)	388
PvuII	CAGCTG	2 cut(s)	203, 487
RigI	GGCCGGCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	6 cut(s)	122, 125, 201, 220, 285, 485
Sau3AI	GATC	3 cut(s)	385, 553, 844
Sau96I	GGNCC	2 cut(s)	53, 58
ScrFI	CCNGG	5 cut(s)	110, 301, 302, 347, 909
SduI	GDGCHC	2 cut(s)	537, 726
SfaNI	GCATC	1 cut(s)	733
SfuI	TTCGAA	1 cut(s)	325
SmaI	CCCGGG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	159
SspMI	CTAG	1 cut(s)	858
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	5 cut(s)	108, 299, 300, 345, 907
TaaI	ACNGT	3 cut(s)	256, 667, 782
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	2 cut(s)	325, 384
TasI	AATT	1 cut(s)	159
TatI	WGTACW	1 cut(s)	25
TfiI	GAWTC	6 cut(s)	7, 47, 362, 515, 794, 814
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	2 cut(s)	736, 753
TseFI	GTSAC	3 cut(s)	104, 713, 911
TseI	GCWGC	6 cut(s)	121, 124, 200, 219, 284, 484
Tsp45I	GTSAC	3 cut(s)	104, 713, 911
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	1 cut(s)	752
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	2 cut(s)	736, 753
Van91I	CCANNNNNTGG	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	722
XapI	RAATTY	1 cut(s)	159
XmaI	CCCGGG	1 cut(s)	300
XmnI	GAANNNNTTC	2 cut(s)	18, 317
XspI	CTAG	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.