Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Forward (+)

41233402 .. 41237242

Gene Structure 3841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1177400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCTGCAGCACTCTGCGATTCGAGCCGAGGAGGCTGAGAAAATTCCCTTCGTGGGGGACAAGGAACCTCTATCATCACTGGCGGCTGAATACCAATCGGGCAGCGCTATCTTGTTGGAGAAAATAAAGGTTCTTGGTGAACAATATGCTGCTATTCGGCGTACACGGGGAGATGGCAACTGCTTCTTCCGAAGCTTTATGTTTTCGTACCTTGAGCATATTTTGGAATCACAAGATCAAAGTGAGGTTGACCGTATCAAGGCCAATGTTGAACAATGCAGAAAAACACTTCAAAGCTTGGGTTATGCAGACTTTACTTTTGAGGATTTCTTTGCGTTATTCCTTGAGCAGCTGGACAGTGTTCTTCAAGGAAATGAAGAATCTATAAGTCATGATGAACTCATACTTAGGAGCCGAGATCAGTCAGTATCTGATTATGTTGTGATGTTTTTTAGATTTGTTACCTCTGGTGAAATCAGGAAACGCTCAGAGTTTTTTGAGCCTTTTATATTGGGATTGACCAATGCAACCGTAGAGCAGTTTTGCAAATCGTCAGTGGAACCGATGGGTGAAGAAAGTGACCACGTGCACATCACTGCCCTGTCAGATGCACTGGGTGTGCCAATCCGTGTTGTGTACCTTGACCGTAGCTCATGTGATAATGGTGGTGTTAGCGTGAATCATCATGACTTCATTCCTGCTGGAAGTGATGCTCCAAAAGCTAGTGAGGGCTCTGAGAAAGTCAGTCCCTTTATTACCTTGCTTTATCGCCCAGGTCACTACGATATTCTCTACCCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

268

Amino Acids

30.09

Weight (kDa)

4.9

Isoelectric Point (pI)

61.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C65	PF10275	11 - 266	9.5e-91	Peptidase C65 Otubain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	42
AcvI	CACGTG	1 cut(s)	586
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	3 cut(s)	163, 209, 638
AfeI	AGCGCT	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	53, 54, 259
AgsI	TTSAA	3 cut(s)	272, 293, 368
AjnI	CCWGG	1 cut(s)	772
AluBI	AGCT	5 cut(s)	195, 297, 352, 651, 722
AluI	AGCT	5 cut(s)	195, 297, 352, 651, 722
Alw21I	GWGCWC	1 cut(s)	591
Alw44I	GTGCAC	1 cut(s)	587
AlwNI	CAGNNNCTG	1 cut(s)	431
Aor51HI	AGCGCT	1 cut(s)	106
AoxI	GGCC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	5 cut(s)	4, 7, 102, 149, 349
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	149, 482, 581
BaeGI	GKGCMC	1 cut(s)	591
BanII	GRGCYC	1 cut(s)	734
BbrPI	CACGTG	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	4 cut(s)	19, 114, 136, 361
BccI	CCATC	2 cut(s)	167, 559
BciT130I	CCWGG	1 cut(s)	774
BfaI	CTAG	1 cut(s)	723
BfmI	CTRYAG	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	6 cut(s)	5, 8, 84, 103, 150, 350
BlsI	GCNGC	6 cut(s)	6, 9, 85, 104, 151, 351
Bme1390I	CCNGG	1 cut(s)	774
BmiI	GGNNCC	3 cut(s)	66, 413, 561
BmrFI	CCNGG	1 cut(s)	774
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	2 cut(s)	598, 700
BmuI	ACTGGG	1 cut(s)	623
BpuEI	CTTGAG	2 cut(s)	233, 365
BsaAI	YACGTR	1 cut(s)	586
BsaJI	CCNNGG	2 cut(s)	27, 772
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 54, 259
Bse1I	ACTGG	2 cut(s)	84, 618
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	2 cut(s)	27, 772
BseLI	CCNNNNNNNGG	3 cut(s)	53, 54, 259
BseMII	CTCAG	3 cut(s)	27, 501, 726
BseNI	ACTGG	2 cut(s)	84, 618
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	591
BseXI	GCAGC	4 cut(s)	19, 114, 136, 361
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	591
BslFI	GGGAC	2 cut(s)	71, 732
BslI	CCNNNNNNNGG	3 cut(s)	53, 54, 259
BsmFI	GGGAC	2 cut(s)	71, 732
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	591, 734
Bsp143I	GATC	2 cut(s)	235, 418
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	3 cut(s)	28, 500, 727
BspHI	TCATGA	2 cut(s)	391, 685
BspLI	GGNNCC	3 cut(s)	66, 413, 561
BspMAI	CTGCAG	1 cut(s)	9
BsrI	ACTGG	2 cut(s)	84, 618
BssECI	CCNNGG	2 cut(s)	27, 772
BssMI	GATC	2 cut(s)	235, 418
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	4 cut(s)	254, 359, 532, 647
BstBAI	YACGTR	1 cut(s)	586
BstDEI	CTNAG	4 cut(s)	36, 407, 487, 735
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	2 cut(s)	238, 421
BstMBI	GATC	2 cut(s)	235, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 719
BstNI	CCWGG	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	772
BstSFI	CTRYAG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	591
BstV1I	GCAGC	4 cut(s)	19, 114, 136, 361
BsuRI	GGCC	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	5 cut(s)	77, 364, 561, 594, 611
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	2 cut(s)	391, 685
CfoI	GCGC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	162, 208, 637
CviAII	CATG	3 cut(s)	392, 654, 686
CviQI	GTAC	3 cut(s)	162, 208, 637
DdeI	CTNAG	4 cut(s)	36, 407, 487, 735
DpnI	GATC	2 cut(s)	237, 420
DpnII	GATC	2 cut(s)	235, 418
DraIII	CACNNNGTG	1 cut(s)	617
Eco24I	GRGCYC	1 cut(s)	734
Eco47III	AGCGCT	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	734
FaeI	CATG	3 cut(s)	395, 657, 689
FaqI	GGGAC	2 cut(s)	71, 732
FatI	CATG	3 cut(s)	391, 653, 685
Fnu4HI	GCNGC	6 cut(s)	5, 8, 84, 103, 150, 350
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	6 cut(s)	5, 8, 84, 103, 150, 350
FspBI	CTAG	1 cut(s)	723
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	6 cut(s)	5, 8, 84, 103, 150, 350
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	395, 657, 689
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	193, 295
HinfI	GANTC	4 cut(s)	19, 227, 380, 679
HphI	GGTGA	3 cut(s)	149, 482, 581
Hpy166II	GTNNAC	5 cut(s)	140, 164, 250, 589, 637
Hpy188I	TCNGA	5 cut(s)	191, 433, 490, 607, 736
Hpy188III	TCNNGA	3 cut(s)	392, 478, 686
Hpy8I	GTNNAC	5 cut(s)	140, 164, 250, 589, 637
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	4 cut(s)	254, 359, 532, 647
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	7 cut(s)	7, 279, 308, 527, 546, 589, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 719
HpyF3I	CTNAG	4 cut(s)	36, 407, 487, 735
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	395, 657, 689
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	235, 418
LmnI	GCTCC	2 cut(s)	411, 718
Lsp1109I	GCAGC	4 cut(s)	19, 114, 136, 361
LweI	GCATC	2 cut(s)	598, 700
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	460, 578, 776
MalI	GATC	2 cut(s)	237, 420
MboI	GATC	2 cut(s)	235, 418
MboII	GAAGA	4 cut(s)	178, 356, 389, 584
MhlI	GDGCHC	2 cut(s)	591, 734
MluCI	AATT	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	22, 25, 78, 238, 316, 475, 721
MspA1I	CMGCKG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	774
MvaI	CCWGG	1 cut(s)	774
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 719
NdeII	GATC	2 cut(s)	235, 418
NlaIII	CATG	3 cut(s)	395, 657, 689
NlaIV	GGNNCC	3 cut(s)	66, 413, 561
NmeAIII	GCCGAG	2 cut(s)	52, 440
NmuCI	GTSAC	2 cut(s)	578, 776
PagI	TCATGA	2 cut(s)	391, 685
PfeI	GAWTC	4 cut(s)	19, 227, 380, 679
PkrI	GCNGC	6 cut(s)	6, 9, 85, 104, 151, 351
PmaCI	CACGTG	1 cut(s)	586
PmlI	CACGTG	1 cut(s)	586
Ppu21I	YACGTR	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	772
PspCI	CACGTG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	3 cut(s)	66, 413, 561
PstI	CTGCAG	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	3 cut(s)	163, 209, 638
RsaNI	GTAC	3 cut(s)	162, 208, 637
SatI	GCNGC	6 cut(s)	5, 8, 84, 103, 150, 350
Sau3AI	GATC	2 cut(s)	235, 418
ScrFI	CCNGG	1 cut(s)	774
SduI	GDGCHC	2 cut(s)	591, 734
SfaNI	GCATC	2 cut(s)	598, 700
SfcI	CTRYAG	1 cut(s)	5
SmlI	CTYRAG	2 cut(s)	212, 344
SmoI	CTYRAG	2 cut(s)	212, 344
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	723
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	254, 359, 532, 647
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	42
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	4 cut(s)	19, 227, 380, 679
TscAI	CASTG	5 cut(s)	84, 364, 561, 601, 618
TseFI	GTSAC	2 cut(s)	578, 776
TseI	GCWGC	5 cut(s)	4, 7, 102, 149, 349
Tsp45I	GTSAC	2 cut(s)	578, 776
TspDTI	ATGAA	3 cut(s)	390, 411, 682
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	5 cut(s)	84, 364, 561, 601, 618
VneI	GTGCAC	1 cut(s)	587
XapI	RAATTY	1 cut(s)	42
XspI	CTAG	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.