Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Forward (+)

23370366 .. 23371471

Gene Structure 1106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18398

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTTCTCTAGTGTTCTTGGTGAACAATATGCTGCCATTAGGAGAACCCGGGGCGACGGGAACTGCTTCTTCCGAAGCTTTATGTTTTCATACCTGGAGCATATTTTGGAATCACAAGATGTAAGTGAAGTTGATCGTATCAAGGCTAATGTTGAACAATGTAGAAAAACACTTCAGACCTTGGGTTATGCAGACTTTACCTTTGAGGACTTCTTTTCGCTATTTCTTGAGCAACTGGATAGTGTTCTTCAAGGAAATGAAGAATCCATTAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

92

Amino Acids

10.79

Weight (kDa)

4.61

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C65	PF10275	6 - 90	1.9e-27	Peptidase C65 Otubain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	155, 251
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp700I	GAANNNNTTC	1 cut(s)	65
AsuC2I	CCSGG	2 cut(s)	49, 50
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	2 cut(s)	49, 50
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	3 cut(s)	49, 50, 95
BmeT110I	CYCGRG	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	49, 50, 95
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	49, 50
BsaJI	CCNNGG	3 cut(s)	48, 49, 180
Bse1I	ACTGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	3 cut(s)	48, 49, 180
BseNI	ACTGG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	3 cut(s)	48, 49, 180
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	3 cut(s)	47, 48, 93
BstV1I	GCAGC	1 cut(s)	19
Cfr9I	CCCGGG	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	274
CviJI	RGCY	2 cut(s)	78, 146
CviKI_1	RGCY	2 cut(s)	78, 146
CviQI	GTAC	1 cut(s)	274
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaiI	YATR	5 cut(s)	30, 83, 91, 102, 189
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	116
HapII	CCGG	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	2 cut(s)	110, 263
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	74, 177
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	4 cut(s)	62, 80, 107, 221
Lsp1109I	GCAGC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	9
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	61, 239, 272
MnlI	CCTC	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	65
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	3 cut(s)	49, 50, 95
MvaI	CCWGG	1 cut(s)	95
NciI	CCSGG	2 cut(s)	49, 50
NdeII	GATC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	110, 263
PkrI	GCNGC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	133
ScrFI	CCNGG	3 cut(s)	49, 50, 95
SetI	ASST	5 cut(s)	80, 96, 182, 203, 275
SmaI	CCCGGG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	47, 48, 93
StyI	CCWWGG	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	110, 263
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	78, 273
TspMI	CCCGGG	1 cut(s)	48
XmaI	CCCGGG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.