Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Reverse (-)

9898225 .. 9901095

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1130400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGCAGCAGCACTCGGCGATTCGAGCAGAGGAGGCTGAGAAAATTCCCTTTCTTGGGGACAAGGCAATACTCAAAAGTCTAGACTTTGAACCACTCTCATCGCTGGCATCTGAATATCAATCAGGCAGCGCTATCTTGTTGGAGAAAATAAAGGTTCTCGGTGAACAATATGCTGCTATTCGGCGAACAAGAGGAGATGGGAACTGCTTCTTCCGAAGCTTTATGTTTTCTTACCTTGAGCATATTTTGGAATCACAAGATCAAAGTGAAGTTGACCGTATCAAGGCCAATGTTGAACAGTGCAGAAAAACACTTCAAAGCTTGGGTTACACAGACTTTACTTTTGAGGATTTTTTTGCGTTATTCCTTGAGCAGCTGGACAGTGTTCTTCAAGGAAATGAAGAATCCATAAGTCATGATGAGCTCATACGTAGGAGCCGAGATCAGTCAGTATCTGACTATGTTGTGATGTTTTTCAGATTTGTTACCTCTGGCGAAATACGGAAACGCTCAGAGTTTTTTGAACCTTTTATATTCGGATTGACCAATGCAACTGTAGAGCAGTTTTGCAAGTCATCCGTGGAGCCAATGGGTGAAGAAAGTGACCATGTGCACATCACTGCCCTGTCAGATGCACTTGGCGTGCCAATCCGTGTGGTGTACCTAGACCGTAGCTCATGTGATAATGGTGGTGTTAGCGTGAATCATCATGATTTCGTTCCTGCTGGAAGCGATGCTCCAAAAGCTAGTGAGGGCTCTGAGAAAGTGACTCCCTATATTACCTTGCTATATCGCCCAGGCCACTACGATCTTCTCTACCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

276

Amino Acids

31.14

Weight (kDa)

4.97

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C65	PF10275	11 - 274	1.7e-88	Peptidase C65 Otubain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	1 cut(s)	662
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	3 cut(s)	53, 54, 283
AgsI	TTSAA	5 cut(s)	89, 296, 317, 392, 524
AjnI	CCWGG	1 cut(s)	796
AluBI	AGCT	6 cut(s)	219, 321, 376, 424, 675, 746
AluI	AGCT	6 cut(s)	219, 321, 376, 424, 675, 746
Alw21I	GWGCWC	2 cut(s)	426, 615
Alw44I	GTGCAC	1 cut(s)	611
AlwNI	CAGNNNCTG	1 cut(s)	455
Aor51HI	AGCGCT	1 cut(s)	130
AoxI	GGCC	2 cut(s)	285, 799
ApaLI	GTGCAC	1 cut(s)	611
ApeKI	GCWGC	5 cut(s)	4, 7, 126, 173, 373
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	173, 605
BaeGI	GKGCMC	1 cut(s)	615
BanII	GRGCYC	2 cut(s)	426, 758
Bbv12I	GWGCWC	2 cut(s)	426, 615
BbvI	GCAGC	5 cut(s)	16, 19, 138, 160, 385
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	798
BfaI	CTAG	3 cut(s)	80, 665, 747
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	5 cut(s)	5, 8, 127, 174, 374
BlsI	GCNGC	5 cut(s)	6, 9, 128, 175, 375
Bme1390I	CCNGG	1 cut(s)	798
BmiI	GGNNCC	2 cut(s)	437, 585
BmrFI	CCNGG	1 cut(s)	798
BmsI	GCATC	3 cut(s)	116, 622, 724
BpuEI	CTTGAG	2 cut(s)	257, 389
BsaAI	YACGTR	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	579, 796
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 54, 283
BseBI	CCWGG	1 cut(s)	798
BseDI	CCNNGG	2 cut(s)	579, 796
BseGI	GGATG	1 cut(s)	575
BseLI	CCNNNNNNNGG	3 cut(s)	53, 54, 283
BseMII	CTCAG	3 cut(s)	27, 525, 750
BseRI	GAGGAG	2 cut(s)	44, 207
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	5 cut(s)	16, 19, 138, 160, 385
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	287, 801
BsiHKAI	GWGCWC	2 cut(s)	426, 615
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	53, 54, 283
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	287, 801
Bsp1286I	GDGCHC	3 cut(s)	426, 615, 758
Bsp143I	GATC	3 cut(s)	259, 442, 808
BspANI	GGCC	2 cut(s)	287, 801
BspCNI	CTCAG	3 cut(s)	28, 524, 751
BspHI	TCATGA	2 cut(s)	415, 709
BspLI	GGNNCC	2 cut(s)	437, 585
BssECI	CCNNGG	2 cut(s)	579, 796
BssMI	GATC	3 cut(s)	259, 442, 808
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	5 cut(s)	278, 300, 383, 556, 671
BstBAI	YACGTR	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	105, 644
BstDEI	CTNAG	3 cut(s)	36, 511, 759
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	575
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	3 cut(s)	262, 445, 811
BstMBI	GATC	3 cut(s)	259, 442, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 743
BstNI	CCWGG	1 cut(s)	798
BstSCI	CCNGG	1 cut(s)	796
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	615
BstSNI	TACGTA	1 cut(s)	431
BstV1I	GCAGC	5 cut(s)	16, 19, 138, 160, 385
BsuRI	GGCC	2 cut(s)	287, 801
BtgI	CCRYGG	1 cut(s)	579
BtgZI	GCGATG	2 cut(s)	84, 747
BtsCI	GGATG	1 cut(s)	575
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	3 cut(s)	305, 388, 618
Cac8I	GCNNGC	2 cut(s)	105, 644
CaiI	CAGNNNCTG	1 cut(s)	455
CciI	TCATGA	2 cut(s)	415, 709
CfoI	GCGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	661
CspCI	CAANNNNNGTGG	2 cut(s)	636, 671
CviAII	CATG	4 cut(s)	416, 608, 678, 710
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	3 cut(s)	36, 511, 759
DpnI	GATC	3 cut(s)	261, 444, 810
DpnII	GATC	3 cut(s)	259, 442, 808
Ecl136II	GAGCTC	1 cut(s)	424
Eco105I	TACGTA	1 cut(s)	431
Eco24I	GRGCYC	2 cut(s)	426, 758
Eco47III	AGCGCT	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	796
EcoT38I	GRGCYC	2 cut(s)	426, 758
FaeI	CATG	4 cut(s)	419, 611, 681, 713
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	415, 607, 677, 709
Fnu4HI	GCNGC	5 cut(s)	5, 8, 127, 174, 374
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	2 cut(s)	426, 758
Fsp4HI	GCNGC	5 cut(s)	5, 8, 127, 174, 374
FspBI	CTAG	3 cut(s)	80, 665, 747
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	5 cut(s)	5, 8, 127, 174, 374
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	287, 801
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	419, 611, 681, 713
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	2 cut(s)	217, 319
HinfI	GANTC	5 cut(s)	19, 251, 404, 703, 769
HphI	GGTGA	2 cut(s)	173, 605
Hpy166II	GTNNAC	4 cut(s)	164, 274, 613, 661
Hpy188I	TCNGA	8 cut(s)	112, 215, 457, 479, 514, 539, 631, 760
Hpy188III	TCNNGA	3 cut(s)	80, 416, 710
Hpy8I	GTNNAC	4 cut(s)	164, 274, 613, 661
HpyCH4III	ACNGT	5 cut(s)	278, 300, 383, 556, 671
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	6 cut(s)	4, 303, 551, 570, 613, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 743
HpyF3I	CTNAG	3 cut(s)	36, 511, 759
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	4 cut(s)	419, 611, 681, 713
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	259, 442, 808
LmnI	GCTCC	3 cut(s)	435, 583, 742
LpnPI	CCDG	9 cut(s)	89, 108, 362, 477, 638, 711, 735, 783, 810
Lsp1109I	GCAGC	5 cut(s)	16, 19, 138, 160, 385
LweI	GCATC	3 cut(s)	116, 622, 724
MaeI	CTAG	3 cut(s)	80, 665, 747
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	4 cut(s)	326, 484, 602, 766
MalI	GATC	3 cut(s)	261, 444, 810
MboI	GATC	3 cut(s)	259, 442, 808
MboII	GAAGA	5 cut(s)	202, 380, 413, 608, 803
MhlI	GDGCHC	3 cut(s)	426, 615, 758
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	6 cut(s)	22, 25, 185, 340, 499, 745
MroXI	GAANNNNTTC	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	798
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 743
NdeII	GATC	3 cut(s)	259, 442, 808
NlaIII	CATG	4 cut(s)	419, 611, 681, 713
NlaIV	GGNNCC	2 cut(s)	437, 585
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	2 cut(s)	602, 766
PagI	TCATGA	2 cut(s)	415, 709
PcsI	WCGNNNNNNNCGW	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	19, 251, 404, 703
PkrI	GCNGC	5 cut(s)	6, 9, 128, 175, 375
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
Ppu21I	YACGTR	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	796
PspN4I	GGNNCC	2 cut(s)	437, 585
PstNI	CAGNNNCTG	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	426
SatI	GCNGC	5 cut(s)	5, 8, 127, 174, 374
Sau3AI	GATC	3 cut(s)	259, 442, 808
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	798
SduI	GDGCHC	3 cut(s)	426, 615, 758
SfaNI	GCATC	3 cut(s)	116, 622, 724
SfcI	CTRYAG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	236, 368
SmoI	CTYRAG	2 cut(s)	236, 368
SnaBI	TACGTA	1 cut(s)	431
Sse9I	AATT	1 cut(s)	42
SspMI	CTAG	3 cut(s)	80, 665, 747
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	796
TaaI	ACNGT	5 cut(s)	278, 300, 383, 556, 671
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	19, 251, 404, 703
TscAI	CASTG	3 cut(s)	305, 388, 625
TseFI	GTSAC	2 cut(s)	602, 766
TseI	GCWGC	5 cut(s)	4, 7, 126, 173, 373
Tsp45I	GTSAC	2 cut(s)	602, 766
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	3 cut(s)	517, 568, 641
TspRI	CASTG	3 cut(s)	305, 388, 625
VneI	GTGCAC	1 cut(s)	611
XapI	RAATTY	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	3 cut(s)	80, 665, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.