Rmu_sc0019159.1_g000001

Ubiquitin thioesterase otubain-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019159.1
Physical Location & Seq
Forward (+)
200 .. 4914
4715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019159.1_g000001.1.cds

Sequence Viewer

Length: 1590 bp
atggagtactgttccatgtcgtcctcggtgtcggtttttgtgcgcacggctcccgtcgcgccttgtatcaggtcgtggttcccatctcggcctgtggtaagttcttctgttcagattcgttatgatcgtgtgtcacgtcaatcggaagaaaccatggatgtggtgctttcccagatccagtctgcctgtagtgcttttcatcagagtggggaaaaggatgcgttcccattctggtttgggacggcgttgagattccgaccaagccgggctctactgaaatcgggtttagggatggcgacgaggtggttgggcgaggaactcgagttagatcatcgtggtggtggggagctgctgaaacggggtgtttggcggcgaggtgatgagggtgggatcgatctgggcgagatccgtgttccggctgatggtatgggtggcggatggcggcttcgagttggtggggctgggatactctttctgcgacgaaggacggtggagcaaagatcaaggtcgaggtcagggatggcatgggtgccaagagtgattttgggtgcccatagcaggttgtggttttgggccttggctctgttggactgcccaagggttttggaagacgttctagggatcttaaattgttatgagttttggatctgctgctttggttcctttggtagaaaattgctctctattcagcgtatttttttgcgtgaagtaggcaaggtcggtcacactaccggcggtcaccttgatagaaggttaccctctattcgacgcatatctttgcgtggaacttatggcttccacatgaggattacatatcaagaagaggactatcttttgctcaagggttcgctttggtcgtgttatttgcggctcgtgaactttgttacagttatgactgcgcaccgcgggaccttccaaagtcttcatcgcaaaagacccagagagagagaagagagagagcgccaccccatttttccaagtcgatcccaacgcccagtccagacgaccccgttttctccccagacaatgcagaatcaggaagggcttcaagtgcaagtggatggggaagtggagtctgggccggccccctcggttgcaacacctgactttgatgagtgggcaagctttggggaccaggatatcatgcagcagcactctgccattcgcgccgaggaggccgagaaaatccccttcctgggggacaaggaaccactctcgtcgctggcagctgagtatcaatcaggcagcgctattttgttggagaaaattaaggttcttggtgaacaatatgctgccattaggagaacccggggcgacgggaactgcttcttccgaagctttatgttttcatacctggagcatattttggaatcacaagatgtaagtgaagttgatcgtatcaaggctaatgttgaacaatgtagaaaaacacttcagagcttgggttatacagactttacctttgaggacttcttttcactatttcttgagcaactggatagtgttcttcaaggaaatgaagaatccattagtcatgatgagctcatacttcggagccgtgatcagtcagtatccgactatggtgagtga

Protein Analysis

529

Amino Acids

60.25

Weight (kDa)

7.19

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012440)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 44, 900
Acc36I ACCTGC 1 cut(s) 549
AccB1I GGYRCC 2 cut(s) 529, 548
AccII CGCG 3 cut(s) 59, 906, 1167
AciI CCGC 7 cut(s) 370, 435, 442, 735, 868, 904, 906
AclWI GGATC 6 cut(s) 169, 398, 400, 629, 653, 978
AcuI CTGAAG 1 cut(s) 1418
AfaI GTAC 1 cut(s) 8
AfeI AGCGCT 1 cut(s) 1249
AfiI CCNNNNNNNGG 6 cut(s) 415, 422, 558, 1195, 1196, 1197
AgsI TTSAA 3 cut(s) 1049, 1415, 1511
AjiI CACGTC 1 cut(s) 137
AjnI CCWGG 3 cut(s) 1134, 1194, 1353
AluBI AGCT 6 cut(s) 349, 1125, 1229, 1338, 1440, 1543
AluI AGCT 6 cut(s) 349, 1125, 1229, 1338, 1440, 1543
Alw21I GWGCWC 1 cut(s) 1545
AlwI GGATC 6 cut(s) 169, 398, 400, 629, 653, 978
Ama87I CYCGRG 2 cut(s) 320, 1308
Aor51HI AGCGCT 1 cut(s) 1249
AoxI GGCC 5 cut(s) 89, 573, 1079, 1083, 1176
ApeKI GCWGC 7 cut(s) 349, 651, 1147, 1150, 1226, 1245, 1292
ArsI GACNNNNNNTTYG 2 cut(s) 1445, 1477
Asp700I GAANNNNTTC 3 cut(s) 612, 1044, 1325
AspLEI GCGC 6 cut(s) 45, 61, 901, 963, 1169, 1250
AspS9I GGNCC 5 cut(s) 573, 909, 1079, 1084, 1132
AsuC2I CCSGG 3 cut(s) 266, 1309, 1310
AsuHPI GGTGA 3 cut(s) 389, 731, 1292
AvaI CYCGRG 2 cut(s) 320, 1308
AvaII GGWCC 2 cut(s) 909, 1132
BaeGI GKGCMC 1 cut(s) 553
BanI GGYRCC 2 cut(s) 529, 548
BanII GRGCYC 2 cut(s) 271, 1545
BauI CACGAG 1 cut(s) 872
BbsI GAAGAC 2 cut(s) 615, 914
Bbv12I GWGCWC 1 cut(s) 1545
BbvI GCAGC 7 cut(s) 336, 638, 1159, 1162, 1238, 1257, 1279
BccI CCATC 6 cut(s) 91, 286, 416, 432, 514, 1055
BceAI ACGGC 3 cut(s) 63, 258, 1542
BciT130I CCWGG 3 cut(s) 1136, 1196, 1355
BciVI GTATCC 2 cut(s) 459, 1582
BclI TGATCA 1 cut(s) 1561
BcnI CCSGG 3 cut(s) 266, 1309, 1310
BfaI CTAG 1 cut(s) 617
BfmI CTRYAG 1 cut(s) 187
BfoI RGCGCY 2 cut(s) 964, 1251
BfuAI ACCTGC 1 cut(s) 549
BfuI GTATCC 2 cut(s) 459, 1582
BglI GCCNNNNNGGC 1 cut(s) 1175
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 6 cut(s) 266, 1136, 1196, 1309, 1310, 1355
Bme18I GGWCC 2 cut(s) 909, 1132
BmeT110I CYCGRG 2 cut(s) 320, 1308
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 5 cut(s) 573, 909, 1079, 1084, 1132
BmrFI CCNGG 6 cut(s) 266, 1136, 1196, 1309, 1310, 1355
BmrI ACTGGG 1 cut(s) 989
BmsI GCATC 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 989
BpiI GAAGAC 2 cut(s) 615, 914
BpmI CTGGAG 1 cut(s) 1376
BpuEI CTTGAG 2 cut(s) 824, 1508
BpuMI CCSGG 3 cut(s) 266, 1309, 1310
Bsa29I ATCGAT 1 cut(s) 393
Bsc4I CCNNNNNNNGG 6 cut(s) 415, 422, 558, 1195, 1196, 1197
Bse118I RCCGGY 2 cut(s) 731, 1081
Bse1I ACTGG 3 cut(s) 178, 995, 1500
BseBI CCWGG 3 cut(s) 1136, 1196, 1355
BseCI ATCGAT 1 cut(s) 393
BseGI GGATG 6 cut(s) 163, 223, 297, 443, 525, 1066
BseLI CCNNNNNNNGG 6 cut(s) 415, 422, 558, 1195, 1196, 1197
BseMII CTCAG 1 cut(s) 1221
BseNI ACTGG 3 cut(s) 178, 995, 1500
BseRI GAGGAG 1 cut(s) 1187
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 7 cut(s) 336, 638, 1159, 1162, 1238, 1257, 1279
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 3 cut(s) 59, 906, 1167
BshFI GGCC 5 cut(s) 91, 575, 1081, 1085, 1178
BshNI GGYRCC 2 cut(s) 529, 548
BshVI ATCGAT 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 1545
BsiHKCI CYCGRG 2 cut(s) 320, 1308
BsiSI CCGG 5 cut(s) 265, 416, 732, 1082, 1309
BslFI GGGAC 4 cut(s) 253, 922, 1145, 1214
BslI CCNNNNNNNGG 6 cut(s) 415, 422, 558, 1195, 1196, 1197
BsmFI GGGAC 4 cut(s) 253, 922, 1145, 1214
BsnI GGCC 5 cut(s) 91, 575, 1081, 1085, 1178
BsoBI CYCGRG 2 cut(s) 320, 1308
Bsp1286I GDGCHC 3 cut(s) 271, 553, 1545
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 7 cut(s) 370, 435, 442, 735, 868, 904, 906
BspANI GGCC 5 cut(s) 91, 575, 1081, 1085, 1178
BspCNI CTCAG 1 cut(s) 1222
BspDI ATCGAT 1 cut(s) 393
BspFNI CGCG 3 cut(s) 59, 906, 1167
BspHI TCATGA 1 cut(s) 1534
BspMI ACCTGC 1 cut(s) 549
BspPI GGATC 6 cut(s) 169, 398, 400, 629, 653, 978
BspT107I GGYRCC 2 cut(s) 529, 548
BsrFI RCCGGY 2 cut(s) 731, 1081
BsrI ACTGG 3 cut(s) 178, 995, 1500
BssAI RCCGGY 2 cut(s) 731, 1081
BssSI CACGAG 1 cut(s) 872
BssT1I CCWWGG 3 cut(s) 153, 576, 596
Bst2BI CACGAG 1 cut(s) 872
Bst2UI CCWGG 3 cut(s) 1136, 1196, 1355
Bst4CI ACNGT 3 cut(s) 11, 490, 889
Bst6I CTCTTC 2 cut(s) 816, 945
BstC8I GCNNGC 3 cut(s) 1083, 1123, 1224
BstDEI CTNAG 1 cut(s) 1230
BstDSI CCRYGG 2 cut(s) 153, 904
BstEII GGTNACC 2 cut(s) 737, 753
BstF5I GGATG 6 cut(s) 163, 223, 297, 443, 525, 1066
BstFNI CGCG 3 cut(s) 59, 906, 1167
BstH2I RGCGCY 2 cut(s) 964, 1251
BstHHI GCGC 6 cut(s) 45, 61, 901, 963, 1169, 1250
BstMWI GCNNNNNNNGC 5 cut(s) 56, 191, 1051, 1166, 1175
BstNI CCWGG 3 cut(s) 1136, 1196, 1355
BstPI GGTNACC 2 cut(s) 737, 753
BstSCI CCNGG 6 cut(s) 264, 1134, 1194, 1307, 1308, 1353
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 553
BstUI CGCG 3 cut(s) 59, 906, 1167
BstV1I GCAGC 7 cut(s) 336, 638, 1159, 1162, 1238, 1257, 1279
BstV2I GAAGAC 2 cut(s) 615, 914
BstX2I RGATCY 4 cut(s) 174, 405, 621, 645
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 4 cut(s) 174, 405, 621, 645
Bsu15I ATCGAT 1 cut(s) 393
BsuI GTATCC 2 cut(s) 459, 1582
BsuRI GGCC 5 cut(s) 91, 575, 1081, 1085, 1178
BsuTUI ATCGAT 1 cut(s) 393
BtgI CCRYGG 2 cut(s) 153, 904
BtgZI GCGATG 1 cut(s) 911
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 6 cut(s) 163, 223, 297, 443, 525, 1066
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 3 cut(s) 1083, 1123, 1224
CciI TCATGA 1 cut(s) 1534
CfoI GCGC 6 cut(s) 45, 61, 901, 963, 1169, 1250
Cfr10I RCCGGY 2 cut(s) 731, 1081
Cfr13I GGNCC 5 cut(s) 573, 909, 1079, 1084, 1132
Cfr42I CCGCGG 1 cut(s) 907
Cfr9I CCCGGG 1 cut(s) 1308
ClaI ATCGAT 1 cut(s) 393
CseI GACGC 1 cut(s) 777
Csp6I GTAC 1 cut(s) 7
CviAII CATG 6 cut(s) 16, 154, 525, 802, 1144, 1535
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 1230
Eam1104I CTCTTC 2 cut(s) 816, 945
EarI CTCTTC 2 cut(s) 816, 945
EciI GGCGGA 1 cut(s) 450
Ecl136II GAGCTC 1 cut(s) 1543
Eco130I CCWWGG 3 cut(s) 153, 576, 596
Eco24I GRGCYC 2 cut(s) 271, 1545
Eco32I GATATC 1 cut(s) 1141
Eco47I GGWCC 2 cut(s) 909, 1132
Eco47III AGCGCT 1 cut(s) 1249
Eco53kI GAGCTC 1 cut(s) 1543
Eco57I CTGAAG 1 cut(s) 1418
Eco88I CYCGRG 2 cut(s) 320, 1308
Eco91I GGTNACC 2 cut(s) 737, 753
EcoICRI GAGCTC 1 cut(s) 1543
EcoO109I RGGNCCY 1 cut(s) 909
EcoO65I GGTNACC 2 cut(s) 737, 753
EcoRII CCWGG 3 cut(s) 1134, 1194, 1353
EcoRV GATATC 1 cut(s) 1141
EcoT14I CCWWGG 3 cut(s) 153, 576, 596
EcoT38I GRGCYC 2 cut(s) 271, 1545
ErhI CCWWGG 3 cut(s) 153, 576, 596
FaeI CATG 6 cut(s) 19, 157, 528, 805, 1147, 1538
FaqI GGGAC 4 cut(s) 253, 922, 1145, 1214
FatI CATG 6 cut(s) 15, 153, 524, 801, 1143, 1534
FauI CCCGC 1 cut(s) 899
FbaI TGATCA 1 cut(s) 1561
FokI GGATG 6 cut(s) 170, 230, 304, 450, 532, 1073
FriOI GRGCYC 2 cut(s) 271, 1545
FseI GGCCGGCC 1 cut(s) 1085
FspAI RTGCGCAY 1 cut(s) 44
FspBI CTAG 1 cut(s) 617
FspI TGCGCA 2 cut(s) 44, 900
GlaI GCGC 6 cut(s) 44, 60, 900, 962, 1168, 1249
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 1376
HaeII RGCGCY 2 cut(s) 964, 1251
HaeIII GGCC 5 cut(s) 91, 575, 1081, 1085, 1178
HapII CCGG 5 cut(s) 265, 416, 732, 1082, 1309
HgaI GACGC 1 cut(s) 777
HhaI GCGC 6 cut(s) 45, 61, 901, 963, 1169, 1250
Hin1II CATG 6 cut(s) 19, 157, 528, 805, 1147, 1538
Hin6I GCGC 6 cut(s) 43, 59, 899, 961, 1167, 1248
HinP1I GCGC 6 cut(s) 43, 59, 899, 961, 1167, 1248
HindIII AAGCTT 2 cut(s) 1123, 1336
HinfI GANTC 6 cut(s) 115, 252, 1033, 1073, 1370, 1523
HpaII CCGG 5 cut(s) 265, 416, 732, 1082, 1309
HphI GGTGA 3 cut(s) 389, 731, 1292
Hpy166II GTNNAC 2 cut(s) 877, 1283
Hpy188I TCNGA 8 cut(s) 114, 145, 204, 257, 1334, 1437, 1554, 1576
Hpy188III TCNNGA 6 cut(s) 818, 874, 1000, 1037, 1487, 1535
Hpy8I GTNNAC 2 cut(s) 877, 1283
Hpy99I CGWCG 6 cut(s) 59, 301, 483, 771, 1222, 1319
HpyAV CCTTC 5 cut(s) 477, 744, 922, 1034, 1201
HpyCH4III ACNGT 3 cut(s) 11, 490, 889
HpyCH4IV ACGT 2 cut(s) 136, 612
HpyCH4V TGCA 4 cut(s) 1030, 1054, 1097, 1147
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 191, 1051, 1166, 1175
HpyF3I CTNAG 1 cut(s) 1230
HpySE526I ACGT 2 cut(s) 136, 612
Hsp92II CATG 6 cut(s) 19, 157, 528, 805, 1147, 1538
HspAI GCGC 6 cut(s) 43, 59, 899, 961, 1167, 1248
KroI GCCGGC 1 cut(s) 1081
KroNI GCCGGC 1 cut(s) 1083
Ksp22I TGATCA 1 cut(s) 1561
KspI CCGCGG 1 cut(s) 907
LmnI GCTCC 5 cut(s) 55, 346, 493, 1357, 1554
Lsp1109I GCAGC 7 cut(s) 336, 638, 1159, 1162, 1238, 1257, 1279
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 617
MaeII ACGT 2 cut(s) 136, 612
MaeIII GTNAC 5 cut(s) 132, 722, 737, 753, 883
MboII GAAGA 9 cut(s) 96, 158, 620, 833, 914, 962, 1321, 1499, 1532
MflI RGATCY 4 cut(s) 174, 405, 621, 645
MhlI GDGCHC 3 cut(s) 271, 553, 1545
MluCI AATT 3 cut(s) 628, 674, 1266
MlyI GAGTC 1 cut(s) 1082
MmeI TCCRAC 3 cut(s) 280, 567, 1239
MroNI GCCGGC 1 cut(s) 1081
MroXI GAANNNNTTC 3 cut(s) 612, 1044, 1325
MseI TTAA 2 cut(s) 626, 1269
MslI CAYNNNNRTG 3 cut(s) 158, 204, 336
MspA1I CMGCKG 2 cut(s) 906, 1229
MspI CCGG 5 cut(s) 265, 416, 732, 1082, 1309
MspR9I CCNGG 6 cut(s) 266, 1136, 1196, 1309, 1310, 1355
MvaI CCWGG 3 cut(s) 1136, 1196, 1355
MvnI CGCG 3 cut(s) 59, 906, 1167
MwoI GCNNNNNNNGC 5 cut(s) 56, 191, 1051, 1166, 1175
NaeI GCCGGC 1 cut(s) 1083
NciI CCSGG 3 cut(s) 266, 1309, 1310
NcoI CCATGG 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 1081
NlaIII CATG 6 cut(s) 19, 157, 528, 805, 1147, 1538
NmeAIII GCCGAG 3 cut(s) 67, 1195, 1204
NmuCI GTSAC 3 cut(s) 132, 722, 737
NsbI TGCGCA 2 cut(s) 44, 900
PaeR7I CTCGAG 1 cut(s) 320
PagI TCATGA 1 cut(s) 1534
PcsI WCGNNNNNNNCGW 4 cut(s) 124, 133, 399, 854
PdiI GCCGGC 1 cut(s) 1083
PdmI GAANNNNTTC 3 cut(s) 612, 1044, 1325
PfeI GAWTC 5 cut(s) 115, 252, 1033, 1370, 1523
PleI GAGTC 1 cut(s) 1081
PpsI GAGTC 1 cut(s) 1081
PpuMI RGGWCCY 1 cut(s) 909
Psp124BI GAGCTC 1 cut(s) 1545
Psp5II RGGWCCY 1 cut(s) 909
Psp6I CCWGG 3 cut(s) 1134, 1194, 1353
PspEI GGTNACC 2 cut(s) 737, 753
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 3 cut(s) 1134, 1194, 1353
PspPI GGNCC 5 cut(s) 573, 909, 1079, 1084, 1132
PspPPI RGGWCCY 1 cut(s) 909
PspXI VCTCGAGB 1 cut(s) 320
PsuI RGATCY 4 cut(s) 174, 405, 621, 645
PvuII CAGCTG 1 cut(s) 1229
RigI GGCCGGCC 1 cut(s) 1085
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 3 cut(s) 158, 204, 336
SacI GAGCTC 1 cut(s) 1545
SacII CCGCGG 1 cut(s) 907
SaqAI TTAA 2 cut(s) 626, 1269
Sau96I GGNCC 5 cut(s) 573, 909, 1079, 1084, 1132
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 1082
ScrFI CCNGG 6 cut(s) 266, 1136, 1196, 1309, 1310, 1355
SduI GDGCHC 3 cut(s) 271, 553, 1545
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 320
Sfr303I CCGCGG 1 cut(s) 907
SgrBI CCGCGG 1 cut(s) 907
SinI GGWCC 2 cut(s) 909, 1132
SlaI CTCGAG 1 cut(s) 320
SmaI CCCGGG 1 cut(s) 1310
SmiMI CAYNNNNRTG 3 cut(s) 158, 204, 336
SmlI CTYRAG 3 cut(s) 320, 839, 1487
SmoI CTYRAG 3 cut(s) 320, 839, 1487
Sse9I AATT 3 cut(s) 628, 674, 1266
SsiI CCGC 7 cut(s) 370, 435, 442, 735, 868, 904, 906
SspMI CTAG 1 cut(s) 617
SstI GAGCTC 1 cut(s) 1545
StyD4I CCNGG 6 cut(s) 264, 1134, 1194, 1307, 1308, 1353
StyI CCWWGG 3 cut(s) 153, 576, 596
TaaI ACNGT 3 cut(s) 11, 490, 889
TaiI ACGT 2 cut(s) 139, 615
TaqI TCGA 6 cut(s) 321, 393, 448, 509, 766, 982
TaqII GACCGA 1 cut(s) 710
TasI AATT 3 cut(s) 628, 674, 1266
TatI WGTACW 1 cut(s) 6
TauI GCSGC 3 cut(s) 373, 445, 871
TfiI GAWTC 5 cut(s) 115, 252, 1033, 1370, 1523
Tru1I TTAA 2 cut(s) 626, 1269
Tru9I TTAA 2 cut(s) 626, 1269
TseFI GTSAC 3 cut(s) 132, 722, 737
TseI GCWGC 7 cut(s) 349, 651, 1147, 1150, 1226, 1245, 1292
Tsp45I GTSAC 3 cut(s) 132, 722, 737
TspDTI ATGAA 4 cut(s) 188, 914, 1338, 1533
TspGWI ACGGA 1 cut(s) 398
TspMI CCCGGG 1 cut(s) 1308
VpaK11BI GGWCC 2 cut(s) 909, 1132
XhoI CTCGAG 1 cut(s) 320
XmaI CCCGGG 1 cut(s) 1308
XmnI GAANNNNTTC 3 cut(s) 612, 1044, 1325
XspI CTAG 1 cut(s) 617
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.