Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012440

Physical Location & Seq

Genomic Coordinates Forward (+)

52265541 .. 52269651

Gene Structure 4111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCAGAATCAGGAAGGGCTTCAAGTGCAAGTGGATGGCGAAGAACCACTCTCGTCGCTGGCAGCTGAGTATCAGTCAGGCAGCGCTATTTTGTTGGAGAAAATAAAGGTTCTTGGTGAACAATATGCTGCCATTAGGAGAACCCGGGCGACGGCAACTGCTTCTTCCGAAGCTTTATGTTTTCATACCTGGTATGCTGTTGAGCACATTTTGGAATCACAAGATGTAAGTGAAGTTGATCGTATCAAGGCTAATGTTGAACAATGTAGAAAAACACTTCAGAGCTTGGGTTATGCAGACTTTACCTTTGAGGACTTCTTTTCGCTATTTCTTGAGCAACTGGATAGTGTTCTTCAAGGAAATGAAGAATCCATTAGTGAACATGATTTTATTATTTTTCACAGTCATGATGAGCTCATACTTCGGAGCCGTGATCAGTCAGTATCCGACTATGGTGAATTTGTTACCTCTGGTGAAATAAGGAAGCGCTCAGAATTTTTTGAACCTTTTATATTGGGATTAACCAATGCAACCGTAGAGCAGTTTTGCAAGTCATCAGTGGAACCAATGGGTGAAGAAAGTGACCACGTGCACATCACTGCCCTGTCAGATGCACTGGGTGTGCCAATCCGTGTTGTGTACCTTGACCGCAGCTCATGTGATACTGGTGGTGTTAGCGTGAATCATCATGATTTTGTTCCTGCTGGCAATGATCTGCCAAATGCAAGTGATAGCTCTGAGAAAGTTCCCAAACCTGGCATTGTTATAGCTTACCTACCAAGGATGCCAACTGCTTTAGTGTTCATTAATGTTATGTATCAGGAACTATCAACTAGGACGAGTGCAAGACAATCAGATTTTGAACAGCCATTTTTGGAGAGACTTTCCTTGAGAAGTTTGCAAGGATATGCTCGACGTTCCGAGCCTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004843 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009987 GO:0016579 GO:0016787 GO:0019538 GO:0019783 GO:0019784 GO:0032182 GO:0036211 GO:0036459 GO:0043130 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070011 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0101005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C65

Protein Analysis

311

Amino Acids

34.86

Weight (kDa)

4.73

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C65	PF10275	14 - 245	4.1e-49	Peptidase C65 Otubain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28120
fragaria_vesca	FvH4_4g22670 FvH4_4g22670
malus_domestica	MD00G1177400.v1.1 MD13G1130400.v1.1
prunus_persica	Prupe.1G215300_v2.0.a1
pyrus_communis	pycom13g11370
rosa_chinensis	RchiOBHm_Chr4g0428911 RchiOBHm_Chr7g0205601
rosa_laevigata	RLG00000007115
rosa_multiflora	Rmu_sc0008612.1_g000010 Rmu_sc0015419.1_g000004 Rmu_sc0019159.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370580
rosa_rugosa	Rorug04G0230400
rosa_samantha	Rh4BG292700 Rh4CG308800 Rh4DG289900
rosa_wichuraiana	Rw4G024880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	458, 494
AcuI	CTGAAG	1 cut(s)	263
AcvI	CACGTG	1 cut(s)	589
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	1 cut(s)	641
AfeI	AGCGCT	2 cut(s)	85, 488
AfiI	CCNNNNNNNGG	2 cut(s)	151, 755
AgsI	TTSAA	5 cut(s)	23, 260, 356, 503, 863
AjnI	CCWGG	2 cut(s)	188, 754
AluBI	AGCT	7 cut(s)	65, 173, 285, 415, 654, 735, 770
AluI	AGCT	7 cut(s)	65, 173, 285, 415, 654, 735, 770
Alw21I	GWGCWC	3 cut(s)	207, 417, 594
Alw26I	GTCTC	1 cut(s)	874
Alw44I	GTGCAC	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	144
Aor51HI	AGCGCT	2 cut(s)	85, 488
ApaLI	GTGCAC	1 cut(s)	590
ApeKI	GCWGC	4 cut(s)	62, 81, 128, 651
ApoI	RAATTY	2 cut(s)	458, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AseI	ATTAAT	1 cut(s)	807
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	86, 489
AsuC2I	CCSGG	2 cut(s)	145, 146
AsuHPI	GGTGA	4 cut(s)	128, 467, 485, 584
AvaI	CYCGRG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	417
BbrPI	CACGTG	1 cut(s)	589
Bbv12I	GWGCWC	3 cut(s)	207, 417, 594
BbvI	GCAGC	4 cut(s)	74, 93, 115, 663
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	2 cut(s)	168, 414
BciT130I	CCWGG	2 cut(s)	190, 756
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	145, 146
BcoDI	GTCTC	1 cut(s)	874
BfaI	CTAG	1 cut(s)	834
BfoI	RGCGCY	2 cut(s)	87, 490
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	4 cut(s)	63, 82, 129, 652
BlsI	GCNGC	4 cut(s)	64, 83, 130, 653
Bme1390I	CCNGG	4 cut(s)	145, 146, 190, 756
BmeT110I	CYCGRG	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	428, 564
BmrFI	CCNGG	4 cut(s)	145, 146, 190, 756
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	2 cut(s)	601, 774
BmuI	ACTGGG	1 cut(s)	626
BpuEI	CTTGAG	2 cut(s)	353, 910
BpuMI	CCSGG	2 cut(s)	145, 146
BsaAI	YACGTR	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	144, 779
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 755
Bse1I	ACTGG	3 cut(s)	345, 621, 670
Bse3DI	GCAATG	1 cut(s)	715
BseBI	CCWGG	2 cut(s)	190, 756
BseDI	CCNNGG	2 cut(s)	144, 779
BseGI	GGATG	2 cut(s)	40, 789
BseLI	CCNNNNNNNGG	2 cut(s)	151, 755
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	3 cut(s)	57, 504, 729
BseNI	ACTGG	3 cut(s)	345, 621, 670
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	4 cut(s)	74, 93, 115, 663
BsiHKAI	GWGCWC	3 cut(s)	207, 417, 594
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	151, 755
BsmAI	GTCTC	1 cut(s)	874
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	3 cut(s)	207, 417, 594
Bsp143I	GATC	3 cut(s)	238, 433, 712
BspACI	CCGC	1 cut(s)	649
BspCNI	CTCAG	3 cut(s)	58, 503, 730
BspHI	TCATGA	2 cut(s)	406, 688
BspLI	GGNNCC	2 cut(s)	428, 564
BsrDI	GCAATG	1 cut(s)	715
BsrI	ACTGG	3 cut(s)	345, 621, 670
BssECI	CCNNGG	2 cut(s)	144, 779
BssMI	GATC	3 cut(s)	238, 433, 712
BssT1I	CCWWGG	1 cut(s)	779
Bst2UI	CCWGG	2 cut(s)	190, 756
Bst4CI	ACNGT	2 cut(s)	404, 535
BstBAI	YACGTR	1 cut(s)	589
BstC8I	GCNNGC	2 cut(s)	60, 706
BstDEI	CTNAG	3 cut(s)	66, 490, 738
BstF5I	GGATG	2 cut(s)	40, 789
BstH2I	RGCGCY	2 cut(s)	87, 490
BstHHI	GCGC	2 cut(s)	86, 489
BstKTI	GATC	3 cut(s)	241, 436, 715
BstMAI	GTCTC	1 cut(s)	874
BstMBI	GATC	3 cut(s)	238, 433, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	190, 756
BstSCI	CCNGG	4 cut(s)	143, 144, 188, 754
BstSLI	GKGCMC	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	74, 93, 115, 663
BsuI	GTATCC	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	40, 789
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	564, 597, 614
Cac8I	GCNNGC	2 cut(s)	60, 706
CciI	TCATGA	2 cut(s)	406, 688
CfoI	GCGC	2 cut(s)	86, 489
Cfr9I	CCCGGG	1 cut(s)	144
CsiI	ACCWGGT	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	640
CviAII	CATG	4 cut(s)	383, 407, 657, 689
CviQI	GTAC	1 cut(s)	640
DdeI	CTNAG	3 cut(s)	66, 490, 738
DpnI	GATC	3 cut(s)	240, 435, 714
DpnII	GATC	3 cut(s)	238, 433, 712
DraIII	CACNNNGTG	1 cut(s)	620
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	779
Eco24I	GRGCYC	1 cut(s)	417
Eco47III	AGCGCT	2 cut(s)	85, 488
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	188, 754
EcoT14I	CCWWGG	1 cut(s)	779
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	779
FaeI	CATG	4 cut(s)	386, 410, 660, 692
FatI	CATG	4 cut(s)	382, 406, 656, 688
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	4 cut(s)	63, 82, 129, 652
FokI	GGATG	2 cut(s)	47, 796
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	4 cut(s)	63, 82, 129, 652
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	2 cut(s)	85, 488
GluI	GCNGC	4 cut(s)	63, 82, 129, 652
HaeII	RGCGCY	2 cut(s)	87, 490
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	2 cut(s)	86, 489
Hin1II	CATG	4 cut(s)	386, 410, 660, 692
Hin6I	GCGC	2 cut(s)	84, 487
HinP1I	GCGC	2 cut(s)	84, 487
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	7, 215, 368, 682
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	4 cut(s)	128, 467, 485, 584
Hpy166II	GTNNAC	4 cut(s)	119, 380, 592, 640
Hpy188I	TCNGA	9 cut(s)	169, 282, 426, 448, 493, 610, 739, 856, 922
Hpy188III	TCNNGA	5 cut(s)	11, 332, 407, 689, 821
Hpy8I	GTNNAC	4 cut(s)	119, 380, 592, 640
Hpy99I	CGWCG	3 cut(s)	58, 154, 918
HpyAV	CCTTC	2 cut(s)	8, 936
HpyCH4III	ACNGT	2 cut(s)	404, 535
HpyCH4IV	ACGT	2 cut(s)	588, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	3 cut(s)	66, 490, 738
HpySE526I	ACGT	2 cut(s)	588, 916
Hsp92II	CATG	4 cut(s)	386, 410, 660, 692
HspAI	GCGC	2 cut(s)	84, 487
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	238, 433, 712
LmnI	GCTCC	1 cut(s)	426
Lsp1109I	GCAGC	4 cut(s)	74, 93, 115, 663
LweI	GCATC	2 cut(s)	601, 774
MabI	ACCWGGT	1 cut(s)	188
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	2 cut(s)	588, 916
MaeIII	GTNAC	2 cut(s)	463, 581
MalI	GATC	3 cut(s)	240, 435, 714
MboI	GATC	3 cut(s)	238, 433, 712
MboII	GAAGA	5 cut(s)	53, 156, 344, 377, 587
MhlI	GDGCHC	3 cut(s)	207, 417, 594
MluCI	AATT	2 cut(s)	458, 494
MmeI	TCCRAC	2 cut(s)	75, 471
MnlI	CCTC	2 cut(s)	304, 478
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	2 cut(s)	521, 807
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	4 cut(s)	145, 146, 190, 756
MvaI	CCWGG	2 cut(s)	190, 756
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	2 cut(s)	145, 146
NdeII	GATC	3 cut(s)	238, 433, 712
NlaIII	CATG	4 cut(s)	386, 410, 660, 692
NlaIV	GGNNCC	2 cut(s)	428, 564
NmuCI	GTSAC	1 cut(s)	581
PagI	TCATGA	2 cut(s)	406, 688
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	7, 215, 368, 682
PkrI	GCNGC	4 cut(s)	64, 83, 130, 653
PmaCI	CACGTG	1 cut(s)	589
PmlI	CACGTG	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	589
PshBI	ATTAAT	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	188, 754
PspCI	CACGTG	1 cut(s)	589
PspGI	CCWGG	2 cut(s)	188, 754
PspN4I	GGNNCC	2 cut(s)	428, 564
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	641
RsaNI	GTAC	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	521, 807
SatI	GCNGC	4 cut(s)	63, 82, 129, 652
Sau3AI	GATC	3 cut(s)	238, 433, 712
ScrFI	CCNGG	4 cut(s)	145, 146, 190, 756
SduI	GDGCHC	3 cut(s)	207, 417, 594
SexAI	ACCWGGT	1 cut(s)	188
SfaNI	GCATC	2 cut(s)	601, 774
SmaI	CCCGGG	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	332, 889
SmoI	CTYRAG	2 cut(s)	332, 889
Sse9I	AATT	2 cut(s)	458, 494
SsiI	CCGC	1 cut(s)	649
SspMI	CTAG	1 cut(s)	834
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	4 cut(s)	143, 144, 188, 754
StyI	CCWWGG	1 cut(s)	779
TaaI	ACNGT	2 cut(s)	404, 535
TaiI	ACGT	2 cut(s)	591, 919
TaqI	TCGA	1 cut(s)	913
TasI	AATT	2 cut(s)	458, 494
TfiI	GAWTC	4 cut(s)	7, 215, 368, 682
Tru1I	TTAA	2 cut(s)	521, 807
Tru9I	TTAA	2 cut(s)	521, 807
TscAI	CASTG	3 cut(s)	564, 604, 621
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	4 cut(s)	62, 81, 128, 651
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	3 cut(s)	173, 378, 793
TspGWI	ACGGA	1 cut(s)	620
TspMI	CCCGGG	1 cut(s)	144
TspRI	CASTG	3 cut(s)	564, 604, 621
VneI	GTGCAC	1 cut(s)	590
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	2 cut(s)	458, 494
XmaI	CCCGGG	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.