AT1G28330

Dormancy/auxin associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005809
Physical Location & Seq
Reverse (-)
9933786 .. 9935440
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28330.4

Sequence Viewer

Length: 369 bp
ATGGTTCTGCTAGAGAAGCTTTGGGATGATGTTGTGGCTGGACCTCAGCCTGACCGTGGCCTTGGCCGCCTCCGTAAGATCACCACCCAACCCATTAATATCCGAGATATAGGAGAAGGGAGCAGCAGTAAGGTGGTGATGCATAGGTCGTTGACCATGCCGGCGGCAGTGAGCCCTGGAACTCCAACGACTCCAACCACTCCGACGACGCCACGTAAGGATAACGTGTGGAGGAGCGTCTTTAATCCGGGAAGCAACCTCGCCACTAGAGCCATCGGCTCCAACATCTTTGATAAACCCACCCATCCAAATTCTCCCTCCGTCTACGACTGGTTGTACAGCGGTGACTCAAGGAGTCAGCACCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0034284 GO:0034285 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

122

Amino Acids

13.41

Weight (kDa)

10.09

Isoelectric Point (pI)

57.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 122 2.7e-61 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AciI CCGC 3 cut(s) 67, 164, 342
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 225
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AoxI GGCC 2 cut(s) 58, 64
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 310
AseI ATTAAT 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 3 cut(s) 73, 148, 356
AvaII GGWCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 135
BccI CCATC 2 cut(s) 281, 312
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 1 cut(s) 249
BfaI CTAG 2 cut(s) 11, 267
BisI GCNGC 3 cut(s) 67, 124, 165
BlsI GCNGC 3 cut(s) 68, 125, 166
Bme1390I CCNGG 2 cut(s) 177, 249
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 2 cut(s) 177, 249
BmsI GCATC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 209
BsaJI CCNNGG 3 cut(s) 55, 61, 175
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 55, 61, 175
BseGI GGATG 2 cut(s) 31, 304
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 2 cut(s) 60, 66
BsiSI CCGG 2 cut(s) 161, 248
BslI CCNNNNNNNGG 1 cut(s) 56
BsnI GGCC 2 cut(s) 60, 66
Bsp1286I GDGCHC 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 1 cut(s) 78
BspACI CCGC 3 cut(s) 67, 164, 342
BspANI GGCC 2 cut(s) 60, 66
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 335
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 55, 61, 175
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 56, 365
BstACI GRCGYC 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 2 cut(s) 31, 304
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 16, 66, 269
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 175, 247
BstV1I GCAGC 1 cut(s) 135
BsuRI GGCC 2 cut(s) 60, 66
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 2 cut(s) 31, 304
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 2 cut(s) 217, 226
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 157
CviJI RGCY 8 cut(s) 19, 38, 49, 60, 66, 174, 272, 279
CviKI_1 RGCY 8 cut(s) 19, 38, 49, 60, 66, 174, 272, 279
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
EaeI YGGCCR 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 110, 144, 158
FatI CATG 1 cut(s) 156
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 67, 124, 165
FokI GGATG 2 cut(s) 38, 291
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 67, 124, 165
FspBI CTAG 2 cut(s) 11, 267
GluI GCNGC 3 cut(s) 67, 124, 165
HaeIII GGCC 2 cut(s) 60, 66
HapII CCGG 2 cut(s) 161, 248
HgaI GACGC 2 cut(s) 217, 226
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 1 cut(s) 160
HincII GTYRAC 1 cut(s) 153
HindII GTYRAC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 3 cut(s) 190, 347, 355
HpaII CCGG 2 cut(s) 161, 248
HphI GGTGA 3 cut(s) 73, 148, 356
Hpy166II GTNNAC 2 cut(s) 153, 325
Hpy188I TCNGA 2 cut(s) 104, 204
Hpy8I GTNNAC 2 cut(s) 153, 325
Hpy99I CGWCG 2 cut(s) 208, 211
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 56, 365
HpyCH4IV ACGT 2 cut(s) 214, 225
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 66, 269
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 2 cut(s) 214, 225
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 160
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 3 cut(s) 120, 234, 284
LpnPI CCDG 7 cut(s) 24, 63, 162, 174, 189, 261, 316
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 1 cut(s) 129
MaeI CTAG 2 cut(s) 11, 267
MaeII ACGT 2 cut(s) 214, 225
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 1 cut(s) 310
MlyI GAGTC 3 cut(s) 184, 341, 364
MmeI TCCRAC 4 cut(s) 209, 218, 227, 306
MnlI CCTC 5 cut(s) 54, 80, 225, 269, 328
Mph1103I ATGCAT 1 cut(s) 144
MroNI GCCGGC 1 cut(s) 160
MseI TTAA 2 cut(s) 96, 243
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 2 cut(s) 161, 248
MspR9I CCNGG 2 cut(s) 177, 249
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 16, 66, 269
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 249
NdeII GATC 1 cut(s) 78
NgoMIV GCCGGC 1 cut(s) 160
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 162
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 3 cut(s) 68, 125, 166
PleI GAGTC 3 cut(s) 184, 341, 363
PpsI GAGTC 3 cut(s) 184, 341, 363
Ppu21I YACGTR 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 41
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 96, 243
SatI GCNGC 3 cut(s) 67, 124, 165
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 3 cut(s) 184, 341, 364
ScrFI CCNGG 2 cut(s) 177, 249
SduI GDGCHC 1 cut(s) 176
SetI ASST 7 cut(s) 21, 46, 135, 149, 217, 228, 261
SfaNI GCATC 1 cut(s) 129
SinI GGWCC 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 1 cut(s) 310
SsiI CCGC 3 cut(s) 67, 164, 342
SspMI CTAG 2 cut(s) 11, 267
StyD4I CCNGG 2 cut(s) 175, 247
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 56, 365
TaiI ACGT 2 cut(s) 217, 228
TasI AATT 1 cut(s) 310
TatI WGTACW 1 cut(s) 336
TauI GCSGC 2 cut(s) 69, 167
Tru1I TTAA 2 cut(s) 96, 243
Tru9I TTAA 2 cut(s) 96, 243
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 344
TspGWI ACGGA 2 cut(s) 62, 310
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 41
VspI ATTAAT 1 cut(s) 96
XapI RAATTY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 2 cut(s) 11, 267
Zsp2I ATGCAT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.