Rh5DG064600

Auxin-repressed 12.5 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005809
Physical Location & Seq
Reverse (-)
5529390 .. 5531770
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG064600.1

Sequence Viewer

Length: 342 bp
ATGGTTCTGCTAGAGAAGCTTTGGGATGATGTAGTAGCTGGACCTCAGCCTGAACGTGGTCTCGGCAAGCTCAGAAAGGTCACCCCTAAGCCCTTGAACATCAAAGATGAGGGAGAGTCGAGCAAGATCACGATGCCGACGACGCCGACGACGCCGGTGACCCCAACAACGCCGGTTTCGGCGCGCAAGGACAACATTTGGAGGAGTGTGTTCCACCCAGGTAGCAACCTTGCGACCAAAACGATGGGAAACCAGGTGTTTGATAGCCCACAGCCAAACTCTCCCACTGTCTATGACTGGTACGTATCACAGTCACTTCGATCCACGCAGATCAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0034284 GO:0034285 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

113

Amino Acids

12.55

Weight (kDa)

9.4

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 109 1.4e-46 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 184
AclWI GGATC 1 cut(s) 315
AcyI GRCGYC 2 cut(s) 143, 152
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 2 cut(s) 217, 252
AluBI AGCT 3 cut(s) 19, 38, 70
AluI AGCT 3 cut(s) 19, 38, 70
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 184, 186
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 73, 169
AvaII GGWCC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 238
BciT130I CCWGG 2 cut(s) 219, 254
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 219, 254
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 219, 254
BmsI GCATC 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 45, 87
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 2 cut(s) 143, 152
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 2 cut(s) 154, 172
Bse1I ACTGG 1 cut(s) 302
BseBI CCWGG 2 cut(s) 219, 254
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 59, 85
BseNI ACTGG 1 cut(s) 302
BsePI GCGCGC 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 184
BsiSI CCGG 2 cut(s) 155, 173
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 126, 320, 330
BspCNI CTCAG 2 cut(s) 58, 84
BspFNI CGCG 1 cut(s) 184
BspPI GGATC 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 65
BsrFI RCCGGY 2 cut(s) 154, 172
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 2 cut(s) 154, 172
BssECI CCNNGG 1 cut(s) 217
BssHII GCGCGC 1 cut(s) 182
BssMI GATC 3 cut(s) 126, 320, 330
BssNI GRCGYC 2 cut(s) 143, 152
Bst2UI CCWGG 2 cut(s) 219, 254
Bst4CI ACNGT 2 cut(s) 289, 312
BstACI GRCGYC 2 cut(s) 143, 152
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 68, 184
BstDEI CTNAG 3 cut(s) 45, 71, 87
BstEII GGTNACC 2 cut(s) 79, 157
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 2 cut(s) 184, 186
BstKTI GATC 3 cut(s) 129, 323, 333
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 3 cut(s) 126, 320, 330
BstMWI GCNNNNNNNGC 3 cut(s) 16, 142, 151
BstNI CCWGG 2 cut(s) 219, 254
BstNSI RCATGY 1 cut(s) 340
BstPI GGTNACC 2 cut(s) 79, 157
BstSCI CCNGG 2 cut(s) 217, 252
BstSNI TACGTA 1 cut(s) 304
BstUI CGCG 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 68, 184
CfoI GCGC 2 cut(s) 184, 186
Cfr10I RCCGGY 2 cut(s) 154, 172
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 2 cut(s) 151, 160
CsiI ACCWGGT 1 cut(s) 252
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 337
CviJI RGCY 7 cut(s) 19, 38, 49, 70, 91, 267, 274
CviKI_1 RGCY 7 cut(s) 19, 38, 49, 70, 91, 267, 274
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 3 cut(s) 45, 71, 87
DpnI GATC 3 cut(s) 128, 322, 332
DpnII GATC 3 cut(s) 126, 320, 330
Eco105I TACGTA 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 41
Eco91I GGTNACC 2 cut(s) 79, 157
EcoO65I GGTNACC 2 cut(s) 79, 157
EcoRII CCWGG 2 cut(s) 217, 252
FaeI CATG 1 cut(s) 340
FaiI YATR 2 cut(s) 294, 338
FatI CATG 1 cut(s) 336
FokI GGATG 1 cut(s) 38
FspBI CTAG 1 cut(s) 11
GlaI GCGC 2 cut(s) 183, 185
HapII CCGG 2 cut(s) 155, 173
HgaI GACGC 2 cut(s) 151, 160
HhaI GCGC 2 cut(s) 184, 186
Hin1I GRCGYC 2 cut(s) 143, 152
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 2 cut(s) 182, 184
HinP1I GCGC 2 cut(s) 182, 184
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 116
HpaII CCGG 2 cut(s) 155, 173
HphI GGTGA 2 cut(s) 73, 169
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 130
Hpy99I CGWCG 4 cut(s) 142, 145, 151, 154
HpyCH4III ACNGT 2 cut(s) 289, 312
HpyCH4IV ACGT 2 cut(s) 55, 303
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 142, 151
HpyF3I CTNAG 3 cut(s) 45, 71, 87
HpySE526I ACGT 2 cut(s) 55, 303
Hsp92I GRCGYC 2 cut(s) 143, 152
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 2 cut(s) 182, 184
Kzo9I GATC 3 cut(s) 126, 320, 330
LpnPI CCDG 9 cut(s) 24, 63, 168, 186, 204, 231, 239, 266, 283
LweI GCATC 1 cut(s) 123
MabI ACCWGGT 1 cut(s) 252
MaeI CTAG 1 cut(s) 11
MaeII ACGT 2 cut(s) 55, 303
MaeIII GTNAC 3 cut(s) 79, 157, 312
MalI GATC 3 cut(s) 128, 322, 332
MboI GATC 3 cut(s) 126, 320, 330
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 54, 103, 195
MspI CCGG 2 cut(s) 155, 173
MspR9I CCNGG 2 cut(s) 219, 254
MvaI CCWGG 2 cut(s) 219, 254
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 16, 142, 151
NdeII GATC 3 cut(s) 126, 320, 330
NlaIII CATG 1 cut(s) 340
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 3 cut(s) 79, 157, 312
NspI RCATGY 1 cut(s) 340
PauI GCGCGC 1 cut(s) 182
PciI ACATGT 1 cut(s) 336
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 146
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Ppu21I YACGTR 1 cut(s) 304
PscI ACATGT 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 217, 252
PspEI GGTNACC 2 cut(s) 79, 157
PspGI CCWGG 2 cut(s) 217, 252
PspPI GGNCC 1 cut(s) 41
PteI GCGCGC 1 cut(s) 182
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
Sau3AI GATC 3 cut(s) 126, 320, 330
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 219, 254
SexAI ACCWGGT 1 cut(s) 252
SfaNI GCATC 1 cut(s) 123
SgrAI CRCCGGYG 1 cut(s) 154
SinI GGWCC 1 cut(s) 41
SnaBI TACGTA 1 cut(s) 304
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 217, 252
TaaI ACNGT 2 cut(s) 289, 312
TaiI ACGT 2 cut(s) 58, 306
TaqI TCGA 2 cut(s) 119, 319
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 3 cut(s) 79, 157, 312
Tsp45I GTSAC 3 cut(s) 79, 157, 312
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 41
XceI RCATGY 1 cut(s) 340
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.