Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005809

Physical Location & Seq

Genomic Coordinates Reverse (-)

2427275 .. 2432758

Gene Structure 5484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTTCTGCTTGAAAAGCTTTGGGATGACATTGTTGCTGGACCTCAGCCTGAACGCGGGCTTGGCAAGCTTAGGAAGGTCACCCCAAAACCCTTGAACATCAAAGATGTGGAGGGAGAGACAAGCAGCAGCAGCAAGTTGGCGATGCCTATGAGCCCAGGAACTCCAGTAACCCCAGGAACACCAGTAACACCAGCTTCAGCTCGTGCTAAGGACAACGTTTGGAGGAGTGTTTTCCACCCAGGCAGCAACCTCGCCACCAGAACCATGGGCAACCAGGTCTTTGACAAGCCGCAGCCCAACTCTCCCACTGTCTATGATTGGCTCTACAGTGGGGAGACCAGGAGCAAGCATCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

120

Amino Acids

13.04

Weight (kDa)

9.75

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT2G33830 AT2G33830
fragaria_vesca	FvH4_3g08830 FvH4_3g08830
malus_domestica	MD14G1054500.v1.1
prunus_persica	Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1
pyrus_communis	pycom05g28790 pycom10g24360
rosa_chinensis	RchiOBHm_Chr5g0008921
rosa_laevigata	RLG00000031616
rosa_multiflora	Rmu_co8458451.1_g000001 Rmu_sc0004677.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067090 Rroxscaffold_1G00067710
rosa_rugosa	Rorug04G0440200
rosa_samantha	Rh5AG068900 Rh5BG065600 Rh5CG076800 Rh5DG064600
rosa_wichuraiana	Rw5G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	57, 293
AclI	AACGTT	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	14, 97
AjnI	CCWGG	5 cut(s)	157, 175, 241, 276, 341
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	4 cut(s)	19, 70, 197, 203
AluI	AGCT	4 cut(s)	19, 70, 197, 203
Alw26I	GTCTC	2 cut(s)	113, 332
ApeKI	GCWGC	5 cut(s)	126, 129, 132, 246, 295
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	5 cut(s)	138, 141, 144, 258, 307
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	5 cut(s)	159, 177, 243, 278, 343
BcoDI	GTCTC	2 cut(s)	113, 332
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	6 cut(s)	127, 130, 133, 247, 293, 296
BlsI	GCNGC	6 cut(s)	128, 131, 134, 248, 294, 297
Bme1390I	CCNGG	5 cut(s)	159, 177, 243, 278, 343
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	5 cut(s)	159, 177, 243, 278, 343
BmsI	GCATC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	3 cut(s)	45, 71, 210
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	157, 175, 241, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	167, 185
BseBI	CCWGG	5 cut(s)	159, 177, 243, 278, 343
BseDI	CCNNGG	4 cut(s)	157, 175, 241, 267
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	167, 185
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	5 cut(s)	138, 141, 144, 258, 307
Bsh1236I	CGCG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	113, 332
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	57, 293
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	167, 185
BssECI	CCNNGG	4 cut(s)	157, 175, 241, 267
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	5 cut(s)	159, 177, 243, 278, 343
Bst4CI	ACNGT	2 cut(s)	313, 332
BstC8I	GCNNGC	3 cut(s)	59, 68, 350
BstDEI	CTNAG	3 cut(s)	45, 71, 210
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	113, 332
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 63, 67, 132, 354
BstNI	CCWGG	5 cut(s)	159, 177, 243, 278, 343
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	5 cut(s)	157, 175, 241, 276, 341
BstSFI	CTRYAG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	5 cut(s)	138, 141, 144, 258, 307
BstXI	CCANNNNNNTGG	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	2 cut(s)	158, 338
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	309, 337
Cac8I	GCNNGC	3 cut(s)	59, 68, 350
Cfr13I	GGNCC	1 cut(s)	41
CsiI	ACCWGGT	1 cut(s)	276
CviAII	CATG	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	45, 71, 210
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	79
EcoRII	CCWGG	5 cut(s)	157, 175, 241, 276, 341
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	271
FaiI	YATR	3 cut(s)	152, 269, 318
FatI	CATG	1 cut(s)	267
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	6 cut(s)	127, 130, 133, 247, 293, 296
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	6 cut(s)	127, 130, 133, 247, 293, 296
GluI	GCNGC	6 cut(s)	127, 130, 133, 247, 293, 296
GsuI	CTGGAG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	271
HindIII	AAGCTT	2 cut(s)	17, 68
HphI	GGTGA	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	313, 332
HpyCH4IV	ACGT	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 63, 67, 132, 354
HpyF3I	CTNAG	3 cut(s)	45, 71, 210
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	345
Lsp1109I	GCAGC	5 cut(s)	138, 141, 144, 258, 307
LweI	GCATC	1 cut(s)	135
MabI	ACCWGGT	1 cut(s)	276
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	79, 169, 187
MhlI	GDGCHC	1 cut(s)	158
MnlI	CCTC	4 cut(s)	54, 106, 219, 263
MspR9I	CCNGG	5 cut(s)	159, 177, 243, 278, 343
MvaI	CCWGG	5 cut(s)	159, 177, 243, 278, 343
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	16, 63, 67, 132, 354
NcoI	CCATGG	1 cut(s)	267
NlaIII	CATG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	79
PkrI	GCNGC	6 cut(s)	128, 131, 134, 248, 294, 297
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	5 cut(s)	157, 175, 241, 276, 341
PspEI	GGTNACC	1 cut(s)	79
PspGI	CCWGG	5 cut(s)	157, 175, 241, 276, 341
PspPI	GGNCC	1 cut(s)	41
SatI	GCNGC	6 cut(s)	127, 130, 133, 247, 293, 296
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	5 cut(s)	159, 177, 243, 278, 343
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	9 cut(s)	21, 46, 72, 81, 199, 205, 222, 255, 282
SexAI	ACCWGGT	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	1 cut(s)	41
SsiI	CCGC	2 cut(s)	57, 293
StyD4I	CCNGG	5 cut(s)	157, 175, 241, 276, 341
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	313, 332
TaiI	ACGT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	295
TscAI	CASTG	2 cut(s)	316, 337
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	5 cut(s)	126, 129, 132, 246, 295
Tsp45I	GTSAC	1 cut(s)	79
TspRI	CASTG	2 cut(s)	316, 337
VpaK11BI	GGWCC	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.