Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005809

Physical Location & Seq

Genomic Coordinates Reverse (-)

59708876 .. 59710064

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0440200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGACACAAGAGCGGACTACGCAAAAGGAAATCTCTTTGTGAGAAATCAATGGTTTTGGTGTCGAACATCATTAAGCTTTCATCTGTTTCTCCTGGTAAAATGAGTTGGGGAACCACGACGACGTCGGCAACAACAACAATCAGATCAGTGCAGCCAGCAGCAGCTCATTCCAGGCCTGAAACCACCAACGTCGTCAGTGGTACTAGTACTGCTGCTTCCACCGAGGTTTTACTGGACATTGAACCTCCTCAGCGTCCGAGAATAAGCCAGGAAAGGCCAGAGGAACCAGCTGCTGTTGCTCGAAACTATCATCATCAATCAAACCAAGCAAAAGTCACATTAAACATCCCTCATGGTTTTTATACTGTCACTACTCCGTCTGTACATGTGAAGCGGGATCATCAAGTACCACCGGACGATGTTGATGGTCGAGCTGAAGATTTTATTCGAAGGAGGAGGCAAATCATCAACGATGTGAATAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

163

Amino Acids

18.06

Weight (kDa)

10.15

Isoelectric Point (pI)

68.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT2G33830 AT2G33830
fragaria_vesca	FvH4_3g08830 FvH4_3g08830
malus_domestica	MD14G1054500.v1.1
prunus_persica	Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1
pyrus_communis	pycom05g28790 pycom10g24360
rosa_chinensis	RchiOBHm_Chr5g0008921
rosa_laevigata	RLG00000031616
rosa_multiflora	Rmu_co8458451.1_g000001 Rmu_sc0004677.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067090 Rroxscaffold_1G00067710
rosa_rugosa	Rorug04G0440200
rosa_samantha	Rh5AG068900 Rh5BG065600 Rh5CG076800 Rh5DG064600
rosa_wichuraiana	Rw5G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	15
AciI	CCGC	2 cut(s)	15, 397
AclWI	GGATC	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	5 cut(s)	205, 211, 387, 411, 487
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	245
AhlI	ACTAGT	1 cut(s)	206
AjnI	CCWGG	3 cut(s)	94, 173, 270
AluBI	AGCT	4 cut(s)	79, 167, 293, 437
AluI	AGCT	4 cut(s)	79, 167, 293, 437
AlwI	GGATC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	176, 278
ApeKI	GCWGC	5 cut(s)	154, 161, 164, 215, 293
AsuII	TTCGAA	1 cut(s)	451
BarI	GAAGNNNNNNTAC	2 cut(s)	202, 234
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	5 cut(s)	166, 173, 176, 202, 280
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	3 cut(s)	96, 175, 272
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	5 cut(s)	155, 162, 165, 216, 294
BlsI	GCNGC	5 cut(s)	156, 163, 166, 217, 295
BmcAI	AGTACT	2 cut(s)	211, 487
Bme1390I	CCNGG	3 cut(s)	96, 175, 272
BmiI	GGNNCC	2 cut(s)	115, 288
BmrFI	CCNGG	3 cut(s)	96, 175, 272
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	451
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	240
BseBI	CCWGG	3 cut(s)	96, 175, 272
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	240, 472
BseXI	GCAGC	5 cut(s)	166, 173, 176, 202, 280
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	178, 280
BsiSI	CCGG	1 cut(s)	416
BsnI	GGCC	2 cut(s)	178, 280
Bsp119I	TTCGAA	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	146, 400
BspACI	CCGC	2 cut(s)	15, 397
BspANI	GGCC	2 cut(s)	178, 280
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	115, 288
BspPI	GGATC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	146, 400
BssNI	GRCGYC	1 cut(s)	125
Bst2UI	CCWGG	3 cut(s)	96, 175, 272
Bst4CI	ACNGT	1 cut(s)	370
BstACI	GRCGYC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	2 cut(s)	149, 403
BstMBI	GATC	2 cut(s)	146, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 299
BstNI	CCWGG	3 cut(s)	96, 175, 272
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	3 cut(s)	94, 173, 270
BstV1I	GCAGC	5 cut(s)	166, 173, 176, 202, 280
BsuRI	GGCC	2 cut(s)	178, 280
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	156, 205
Cac8I	GCNNGC	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	296
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	5 cut(s)	204, 210, 386, 410, 486
CviAII	CATG	2 cut(s)	356, 389
CviJI	RGCY	8 cut(s)	79, 157, 167, 178, 270, 280, 293, 437
CviKI_1	RGCY	8 cut(s)	79, 157, 167, 178, 270, 280, 293, 437
CviQI	GTAC	5 cut(s)	204, 210, 386, 410, 486
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	148, 402
DpnII	GATC	2 cut(s)	146, 400
Eco147I	AGGCCT	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	459
EcoRII	CCWGG	3 cut(s)	94, 173, 270
FaeI	CATG	2 cut(s)	359, 392
FaiI	YATR	3 cut(s)	357, 366, 390
FatI	CATG	2 cut(s)	355, 388
FauI	CCCGC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	155, 162, 165, 216, 294
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	5 cut(s)	155, 162, 165, 216, 294
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	5 cut(s)	155, 162, 165, 216, 294
HaeIII	GGCC	2 cut(s)	178, 280
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	359, 392
HindIII	AAGCTT	1 cut(s)	77
HpaII	CCGG	1 cut(s)	416
Hpy188I	TCNGA	2 cut(s)	146, 261
Hpy99I	CGWCG	4 cut(s)	124, 127, 130, 197
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	2 cut(s)	125, 192
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 299
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	125, 192
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	359, 392
Kzo9I	GATC	2 cut(s)	146, 400
Lsp1109I	GCAGC	5 cut(s)	166, 173, 176, 202, 280
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	2 cut(s)	125, 192
MaeIII	GTNAC	2 cut(s)	337, 370
MalI	GATC	2 cut(s)	148, 402
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	2 cut(s)	146, 400
MboII	GAAGA	1 cut(s)	452
MnlI	CCTC	7 cut(s)	220, 258, 261, 277, 363, 450, 453
MseI	TTAA	2 cut(s)	75, 344
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	3 cut(s)	96, 175, 272
MvaI	CCWGG	3 cut(s)	96, 175, 272
MwoI	GCNNNNNNNGC	2 cut(s)	21, 299
NdeII	GATC	2 cut(s)	146, 400
NlaIII	CATG	2 cut(s)	359, 392
NlaIV	GGNNCC	2 cut(s)	115, 288
NmuCI	GTSAC	2 cut(s)	337, 370
NspI	RCATGY	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	178
PciI	ACATGT	1 cut(s)	388
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	5 cut(s)	156, 163, 166, 217, 295
PscI	ACATGT	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	94, 173, 270
PspGI	CCWGG	3 cut(s)	94, 173, 270
PspN4I	GGNNCC	2 cut(s)	115, 288
PstNI	CAGNNNCTG	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	5 cut(s)	205, 211, 387, 411, 487
RsaNI	GTAC	5 cut(s)	204, 210, 386, 410, 486
SaqAI	TTAA	2 cut(s)	75, 344
SatI	GCNGC	5 cut(s)	155, 162, 165, 216, 294
Sau3AI	GATC	2 cut(s)	146, 400
ScaI	AGTACT	2 cut(s)	211, 487
ScrFI	CCNGG	3 cut(s)	96, 175, 272
SetI	ASST	8 cut(s)	81, 128, 169, 195, 231, 250, 295, 439
SfuI	TTCGAA	1 cut(s)	451
SpeI	ACTAGT	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	15, 397
SspMI	CTAG	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	3 cut(s)	94, 173, 270
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	2 cut(s)	128, 195
TaqI	TCGA	4 cut(s)	65, 304, 433, 451
TatI	WGTACW	3 cut(s)	209, 385, 485
Tru1I	TTAA	2 cut(s)	75, 344
Tru9I	TTAA	2 cut(s)	75, 344
TscAI	CASTG	2 cut(s)	156, 205
TseFI	GTSAC	2 cut(s)	337, 370
TseI	GCWGC	5 cut(s)	154, 161, 164, 215, 293
Tsp45I	GTSAC	2 cut(s)	337, 370
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	2 cut(s)	156, 205
Tth111I	GACNNNGTC	1 cut(s)	124
XceI	RCATGY	1 cut(s)	392
XspI	CTAG	1 cut(s)	207
ZraI	GACGTC	1 cut(s)	126
ZrmI	AGTACT	2 cut(s)	211, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.