Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458451.1

Orthogroup ID

OG0005809

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 556

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458451.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

atggttctgctagagaagctttgggatgatgtagtagctggacctcagcctgaacgtggtctcggcaagctcagaaaggtcacccctaagcccttgaacatcaaagatgagggagagtcgagcaagatcacgatgccgacgacgccgacgacgccggtgaccccaacaacgccggtttcggcgcgcaaggacaacatttggaggagtgtgttccacccaggtagcaaccttgcgaccaaaacgatgggaaaccaggtgtttgatagcccacagccaaactctcccactgtctatgactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0034284 GO:0034285 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

99

Amino Acids

10.86

Weight (kDa)

9.1

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT2G33830 AT2G33830
fragaria_vesca	FvH4_3g08830 FvH4_3g08830
malus_domestica	MD14G1054500.v1.1
prunus_persica	Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1
pyrus_communis	pycom05g28790 pycom10g24360
rosa_chinensis	RchiOBHm_Chr5g0008921
rosa_laevigata	RLG00000031616
rosa_multiflora	Rmu_co8458451.1_g000001 Rmu_sc0004677.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067090 Rroxscaffold_1G00067710
rosa_rugosa	Rorug04G0440200
rosa_samantha	Rh5AG068900 Rh5BG065600 Rh5CG076800 Rh5DG064600
rosa_wichuraiana	Rw5G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AcyI	GRCGYC	2 cut(s)	143, 152
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	217, 252
AluBI	AGCT	3 cut(s)	19, 38, 70
AluI	AGCT	3 cut(s)	19, 38, 70
Alw26I	GTCTC	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	184, 186
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	73, 169
AvaII	GGWCC	1 cut(s)	41
BbvCI	CCTCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	219, 254
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	219, 254
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	2 cut(s)	219, 254
BmsI	GCATC	1 cut(s)	123
Bpu10I	CCTNAGC	2 cut(s)	45, 87
BsaHI	GRCGYC	2 cut(s)	143, 152
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	2 cut(s)	154, 172
BseBI	CCWGG	2 cut(s)	219, 254
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	59, 85
BsePI	GCGCGC	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	155, 173
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	58, 84
BspFNI	CGCG	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	2 cut(s)	154, 172
BssAI	RCCGGY	2 cut(s)	154, 172
BssECI	CCNNGG	1 cut(s)	217
BssHII	GCGCGC	1 cut(s)	182
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	2 cut(s)	143, 152
Bst2UI	CCWGG	2 cut(s)	219, 254
Bst4CI	ACNGT	1 cut(s)	289
BstACI	GRCGYC	2 cut(s)	143, 152
BstC8I	GCNNGC	2 cut(s)	68, 184
BstDEI	CTNAG	3 cut(s)	45, 71, 87
BstEII	GGTNACC	2 cut(s)	79, 157
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	184, 186
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 142, 151
BstNI	CCWGG	2 cut(s)	219, 254
BstPI	GGTNACC	2 cut(s)	79, 157
BstSCI	CCNGG	2 cut(s)	217, 252
BstUI	CGCG	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	68, 184
CfoI	GCGC	2 cut(s)	184, 186
Cfr10I	RCCGGY	2 cut(s)	154, 172
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	151, 160
CsiI	ACCWGGT	1 cut(s)	252
CviJI	RGCY	7 cut(s)	19, 38, 49, 70, 91, 267, 274
CviKI_1	RGCY	7 cut(s)	19, 38, 49, 70, 91, 267, 274
DdeI	CTNAG	3 cut(s)	45, 71, 87
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	41
Eco91I	GGTNACC	2 cut(s)	79, 157
EcoO65I	GGTNACC	2 cut(s)	79, 157
EcoRII	CCWGG	2 cut(s)	217, 252
FaiI	YATR	1 cut(s)	294
FokI	GGATG	1 cut(s)	38
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	2 cut(s)	183, 185
HapII	CCGG	2 cut(s)	155, 173
HgaI	GACGC	2 cut(s)	151, 160
HhaI	GCGC	2 cut(s)	184, 186
Hin1I	GRCGYC	2 cut(s)	143, 152
Hin6I	GCGC	2 cut(s)	182, 184
HinP1I	GCGC	2 cut(s)	182, 184
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	2 cut(s)	155, 173
HphI	GGTGA	2 cut(s)	73, 169
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	1 cut(s)	130
Hpy99I	CGWCG	4 cut(s)	142, 145, 151, 154
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 142, 151
HpyF3I	CTNAG	3 cut(s)	45, 71, 87
HpySE526I	ACGT	1 cut(s)	55
Hsp92I	GRCGYC	2 cut(s)	143, 152
HspAI	GCGC	2 cut(s)	182, 184
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	8 cut(s)	24, 63, 168, 186, 204, 231, 239, 266
LweI	GCATC	1 cut(s)	123
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	2 cut(s)	79, 157
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	54, 103, 195
MspI	CCGG	2 cut(s)	155, 173
MspR9I	CCNGG	2 cut(s)	219, 254
MvaI	CCWGG	2 cut(s)	219, 254
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	3 cut(s)	16, 142, 151
NdeII	GATC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	79, 157
PauI	GCGCGC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 146
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	217, 252
PspEI	GGTNACC	2 cut(s)	79, 157
PspGI	CCWGG	2 cut(s)	217, 252
PspPI	GGNCC	1 cut(s)	41
PteI	GCGCGC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	219, 254
SetI	ASST	9 cut(s)	21, 40, 46, 58, 72, 81, 223, 231, 258
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	123
SgrAI	CRCCGGYG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	217, 252
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	2 cut(s)	79, 157
Tsp45I	GTSAC	2 cut(s)	79, 157
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	41
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.