Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005809

Physical Location & Seq

Genomic Coordinates Forward (+)

29385655 .. 29386402

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTTCTGCTTGAAAAGCTTTGGGATGATATTGTCGCCGGACCTCAGCCTGAACGTGGCCTTGGCATGCTTAGGAAGCCGTCTCCTAAGCCCTTGAATATCAAAGTGGAGGGAGAGTCGAGCAAGTTGGCGATGCCGATGAGCCCCGGAACACCAGGCACCCCAGGAACCCCGGGCACACCAGCTTCCGCTCGTGCTAAGGACAACGTTTGGAGGAGTGTGTTCCATCCAGGTAGCAACCTTGCCACCAAATCCATGGGCAACCAGGTTTTCGACAAGCCACAGCCCAACTCTCCCACCGTCTACGACTGGCTCTACAGCGGGGAGACCAGGAGCATCCATCATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

117

Amino Acids

12.63

Weight (kDa)

9.63

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT2G33830 AT2G33830
fragaria_vesca	FvH4_3g08830 FvH4_3g08830
malus_domestica	MD14G1054500.v1.1
prunus_persica	Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1
pyrus_communis	pycom05g28790 pycom10g24360
rosa_chinensis	RchiOBHm_Chr5g0008921
rosa_laevigata	RLG00000031616
rosa_multiflora	Rmu_co8458451.1_g000001 Rmu_sc0004677.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067090 Rroxscaffold_1G00067710
rosa_rugosa	Rorug04G0440200
rosa_samantha	Rh5AG068900 Rh5BG065600 Rh5CG076800 Rh5DG064600
rosa_wichuraiana	Rw5G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	189, 321
AclI	AACGTT	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	14, 97
AjnI	CCWGG	5 cut(s)	154, 163, 229, 264, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	2 cut(s)	19, 185
AluI	AGCT	2 cut(s)	19, 185
Alw26I	GTCTC	2 cut(s)	87, 320
Ama87I	CYCGRG	1 cut(s)	172
AoxI	GGCC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	3 cut(s)	147, 173, 174
AvaI	CYCGRG	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	146
BauI	CACGAG	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	45
BccI	CCATC	2 cut(s)	234, 348
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	5 cut(s)	156, 165, 231, 266, 331
BcnI	CCSGG	3 cut(s)	147, 173, 174
BcoDI	GTCTC	2 cut(s)	87, 320
BfmI	CTRYAG	1 cut(s)	316
Bme1390I	CCNGG	8 cut(s)	147, 156, 165, 173, 174, 231, 266, 331
Bme18I	GGWCC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	160, 169
BmrFI	CCNGG	8 cut(s)	147, 156, 165, 173, 174, 231, 266, 331
BmsI	GCATC	2 cut(s)	123, 345
Bpu10I	CCTNAGC	4 cut(s)	45, 71, 87, 198
BpuMI	CCSGG	3 cut(s)	147, 173, 174
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	6 cut(s)	61, 145, 163, 171, 172, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	5 cut(s)	156, 165, 231, 266, 331
BseDI	CCNNGG	6 cut(s)	61, 145, 163, 171, 172, 255
BseGI	GGATG	3 cut(s)	31, 226, 336
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	179
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	172
BsiSI	CCGG	3 cut(s)	39, 147, 173
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	87, 320
BsmBI	CGTCTC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	60
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	146, 179
Bsp19I	CCATGG	1 cut(s)	255
BspACI	CCGC	2 cut(s)	189, 321
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	160, 169
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	6 cut(s)	61, 145, 163, 171, 172, 255
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	61, 255
Bst2BI	CACGAG	1 cut(s)	192
Bst2UI	CCWGG	5 cut(s)	156, 165, 231, 266, 331
Bst4CI	ACNGT	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	4 cut(s)	45, 71, 87, 198
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	31, 226, 336
BstMAI	GTCTC	2 cut(s)	87, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 76
BstNI	CCWGG	5 cut(s)	156, 165, 231, 266, 331
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	8 cut(s)	145, 154, 163, 171, 172, 229, 264, 329
BstSFI	CTRYAG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	31, 226, 336
Cac8I	GCNNGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	41
Cfr9I	CCCGGG	1 cut(s)	172
CsiI	ACCWGGT	1 cut(s)	264
CviAII	CATG	2 cut(s)	67, 256
DdeI	CTNAG	4 cut(s)	45, 71, 87, 198
Eco130I	CCWWGG	2 cut(s)	61, 255
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	172
EcoRII	CCWGG	5 cut(s)	154, 163, 229, 264, 329
EcoT14I	CCWWGG	2 cut(s)	61, 255
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	2 cut(s)	61, 255
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	2 cut(s)	70, 259
FaiI	YATR	2 cut(s)	68, 257
FatI	CATG	2 cut(s)	66, 255
FauI	CCCGC	1 cut(s)	314
FblI	GTMKAC	1 cut(s)	303
FokI	GGATG	3 cut(s)	38, 213, 323
FriOI	GRGCYC	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	3 cut(s)	39, 147, 173
Hin1II	CATG	2 cut(s)	70, 259
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	3 cut(s)	39, 147, 173
Hpy166II	GTNNAC	1 cut(s)	304
Hpy8I	GTNNAC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	2 cut(s)	55, 207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 76
HpyF3I	CTNAG	4 cut(s)	45, 71, 87, 198
HpySE526I	ACGT	2 cut(s)	55, 207
Hsp92II	CATG	2 cut(s)	70, 259
LmnI	GCTCC	1 cut(s)	333
LweI	GCATC	2 cut(s)	123, 345
MabI	ACCWGGT	1 cut(s)	264
MaeII	ACGT	2 cut(s)	55, 207
MbiI	CCGCTC	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	146, 179
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	54, 103, 207
MseI	TTAA	1 cut(s)	349
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	3 cut(s)	39, 147, 173
MspR9I	CCNGG	8 cut(s)	147, 156, 165, 173, 174, 231, 266, 331
MvaI	CCWGG	5 cut(s)	156, 165, 231, 266, 331
MwoI	GCNNNNNNNGC	2 cut(s)	16, 76
NciI	CCSGG	3 cut(s)	147, 173, 174
NcoI	CCATGG	1 cut(s)	255
NlaIII	CATG	2 cut(s)	70, 259
NlaIV	GGNNCC	2 cut(s)	160, 169
NspI	RCATGY	1 cut(s)	70
PaeI	GCATGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp1406I	AACGTT	1 cut(s)	207
Psp6I	CCWGG	5 cut(s)	154, 163, 229, 264, 329
PspGI	CCWGG	5 cut(s)	154, 163, 229, 264, 329
PspN4I	GGNNCC	2 cut(s)	160, 169
PspPI	GGNCC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	8 cut(s)	147, 156, 165, 173, 174, 231, 266, 331
SduI	GDGCHC	2 cut(s)	146, 179
SetI	ASST	8 cut(s)	21, 46, 58, 187, 210, 235, 243, 270
SexAI	ACCWGGT	1 cut(s)	264
SfaNI	GCATC	2 cut(s)	123, 345
SfcI	CTRYAG	1 cut(s)	316
SinI	GGWCC	1 cut(s)	41
SmaI	CCCGGG	1 cut(s)	174
SphI	GCATGC	1 cut(s)	70
SsiI	CCGC	2 cut(s)	189, 321
StyD4I	CCNGG	8 cut(s)	145, 154, 163, 171, 172, 229, 264, 329
StyI	CCWWGG	2 cut(s)	61, 255
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	2 cut(s)	58, 210
TaqI	TCGA	2 cut(s)	119, 273
Tru1I	TTAA	1 cut(s)	349
Tru9I	TTAA	1 cut(s)	349
TspMI	CCCGGG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	41
XceI	RCATGY	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmaI	CCCGGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.