Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005809

Physical Location & Seq

Genomic Coordinates Forward (+)

26240063 .. 26241393

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTAACGCTACCAGCTGGAAGTAGCAAAACAAAAGATGAAAACAAAAGATGGCAAATTAATAGAAAGAGAGAGAAAGAAAGAAAGAAAGAGAAGAGAGAGAGAGAGAGAGCAAAAATGGTTCTTCTTGAAAAGCTTTGGGATGATATTGTCGCCGGACCTCAGCCTGAACGCGGCCTCGGCAGGCTGAGGAAGGTGTCTCCTAAGCCCTTGAACGCAAAAGAAGGGGAAGGAGAGTCGAGCAAGTTGGCGATGCCGATGAGCCCGGCAACACCAGGAACCCCAGGCACACCAGTATCTGCTCGTGCTAAAGACAACGTTTGGAGGAGTGTCTTCCACCCAGGTAGCAACCTTGCCTCCAAATCCATGGGCAACCAGGTTTTCGACAAGCCACAGCCCAACTCTCCCACTGTCTACGACTGGCTCTACAGTGGGGAGACCAGGAGCAAGCATCATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

154

Amino Acids

17.31

Weight (kDa)

10.25

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT2G33830 AT2G33830
fragaria_vesca	FvH4_3g08830 FvH4_3g08830
malus_domestica	MD14G1054500.v1.1
prunus_persica	Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1
pyrus_communis	pycom05g28790 pycom10g24360
rosa_chinensis	RchiOBHm_Chr5g0008921
rosa_laevigata	RLG00000031616
rosa_multiflora	Rmu_co8458451.1_g000001 Rmu_sc0004677.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067090 Rroxscaffold_1G00067710
rosa_rugosa	Rorug04G0440200
rosa_samantha	Rh5AG068900 Rh5BG065600 Rh5CG076800 Rh5DG064600
rosa_wichuraiana	Rw5G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	1 cut(s)	174
AciI	CCGC	1 cut(s)	174
AclI	AACGTT	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	131, 214
AjnI	CCWGG	5 cut(s)	274, 283, 340, 375, 440
AluBI	AGCT	2 cut(s)	17, 136
AluI	AGCT	2 cut(s)	17, 136
Alw26I	GTCTC	2 cut(s)	204, 431
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	175
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	158
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BanII	GRGCYC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	325
BbvCI	CCTCAGC	2 cut(s)	162, 188
BccI	CCATC	1 cut(s)	45
BciT130I	CCWGG	5 cut(s)	276, 285, 342, 377, 442
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	204, 431
BfmI	CTRYAG	1 cut(s)	427
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	6 cut(s)	266, 276, 285, 342, 377, 442
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	6 cut(s)	266, 276, 285, 342, 377, 442
BmsI	GCATC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	325
Bpu10I	CCTNAGC	3 cut(s)	162, 188, 204
BpuMI	CCSGG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	4 cut(s)	178, 283, 340, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	293, 425
BseBI	CCWGG	5 cut(s)	276, 285, 342, 377, 442
BseDI	CCNNGG	4 cut(s)	178, 283, 340, 366
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	176, 179
BseNI	ACTGG	2 cut(s)	293, 425
BseRI	GAGGAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	156, 266
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	2 cut(s)	204, 431
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	175, 180
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	293, 425
BssECI	CCNNGG	4 cut(s)	178, 283, 340, 366
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	5 cut(s)	276, 285, 342, 377, 442
Bst4CI	ACNGT	2 cut(s)	412, 431
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	185, 449
BstDEI	CTNAG	3 cut(s)	162, 188, 204
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	174
BstMAI	GTCTC	2 cut(s)	204, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	5 cut(s)	276, 285, 342, 377, 442
BstSCI	CCNGG	6 cut(s)	264, 274, 283, 340, 375, 440
BstSFI	CTRYAG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	408, 436
Cac8I	GCNNGC	2 cut(s)	185, 449
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	158
CsiI	ACCWGGT	1 cut(s)	375
CviAII	CATG	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	162, 188, 204
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	158
EcoRII	CCWGG	5 cut(s)	274, 283, 340, 375, 440
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	370
FaiI	YATR	1 cut(s)	368
FatI	CATG	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	2 cut(s)	156, 266
Hin1II	CATG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	1 cut(s)	236
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	2 cut(s)	156, 266
Hpy166II	GTNNAC	2 cut(s)	6, 415
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	6, 415
HpyAV	CCTTC	3 cut(s)	187, 218, 224
HpyCH4III	ACNGT	2 cut(s)	412, 431
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	3 cut(s)	162, 188, 204
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	444
LweI	GCATC	1 cut(s)	243
MabI	ACCWGGT	1 cut(s)	375
MaeII	ACGT	1 cut(s)	318
MboII	GAAGA	3 cut(s)	106, 116, 325
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	5 cut(s)	171, 183, 188, 318, 367
MseI	TTAA	3 cut(s)	5, 60, 460
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	156, 266
MspR9I	CCNGG	6 cut(s)	266, 276, 285, 342, 377, 442
MvaI	CCWGG	5 cut(s)	276, 285, 342, 377, 442
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	366
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	280
NmeAIII	GCCGAG	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PshBI	ATTAAT	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	5 cut(s)	274, 283, 340, 375, 440
PspGI	CCWGG	5 cut(s)	274, 283, 340, 375, 440
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	5, 60, 460
SatI	GCNGC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	6 cut(s)	266, 276, 285, 342, 377, 442
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	8 cut(s)	19, 138, 163, 198, 321, 346, 354, 381
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	158
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	174
StyD4I	CCNGG	6 cut(s)	264, 274, 283, 340, 375, 440
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	412, 431
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	239, 384
TasI	AATT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	177
Tru1I	TTAA	3 cut(s)	5, 60, 460
Tru9I	TTAA	3 cut(s)	5, 60, 460
TscAI	CASTG	2 cut(s)	415, 436
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	415, 436
VpaK11BI	GGWCC	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.