FvH4_3g08830

Auxin-repressed 12.5 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005809
Physical Location & Seq
Forward (+)
5157384 .. 5158425
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08830.t1

Sequence Viewer

Length: 258 bp
ATGCGTGGTGGTGTAGATGAGGGAGAGTCGAGCAAGATCACGATGCCGACGACGCCAACGACGCCGACGACGCCGGTGACCCCAACAACGCCGATATCGGCGCGCAAGGACAACGTATGGAGGAGTGTGTTCCACCCAGGTAGCAACCTGTCTAGCAAGACGATGGGAAACCAGGTGTTTGATAGCCCACAGCCAAACTCTCCCACTGTCTATGACTGGATGTACAGTGGAGAGACGAGGAGCAAGCATCATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

86

Amino Acids

9.39

Weight (kDa)

9.3

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 11 - 84 6.1e-36 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 103
AcyI GRCGYC 3 cut(s) 53, 62, 71
AfaI GTAC 1 cut(s) 224
AjnI CCWGG 2 cut(s) 136, 171
Alw26I GTCTC 1 cut(s) 227
AspLEI GCGC 2 cut(s) 103, 105
AsuHPI GGTGA 1 cut(s) 88
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 2 cut(s) 138, 173
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 153
Bme1390I CCNGG 2 cut(s) 138, 173
BmrFI CCNGG 2 cut(s) 138, 173
BmsI GCATC 1 cut(s) 33
BsaHI GRCGYC 3 cut(s) 53, 62, 71
BsaJI CCNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 2 cut(s) 138, 173
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 221
BsePI GCGCGC 1 cut(s) 101
BseRI GAGGAG 2 cut(s) 136, 253
Bsh1236I CGCG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 36
BspFNI CGCG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 73
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 136
BssHII GCGCGC 1 cut(s) 101
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 3 cut(s) 53, 62, 71
Bst2UI CCWGG 2 cut(s) 138, 173
Bst4CI ACNGT 2 cut(s) 208, 227
BstACI GRCGYC 3 cut(s) 53, 62, 71
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 103, 245
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 2 cut(s) 103, 105
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 52, 61, 70
BstNI CCWGG 2 cut(s) 138, 173
BstPI GGTNACC 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 136, 171
BstUI CGCG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 204, 232
Cac8I GCNNGC 2 cut(s) 103, 245
CfoI GCGC 2 cut(s) 103, 105
Cfr10I RCCGGY 1 cut(s) 73
CseI GACGC 3 cut(s) 61, 70, 79
CsiI ACCWGGT 1 cut(s) 171
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 2 cut(s) 186, 193
CviKI_1 RGCY 2 cut(s) 186, 193
CviQI GTAC 1 cut(s) 223
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 136, 171
EcoRV GATATC 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 227
FaiI YATR 2 cut(s) 118, 213
FokI GGATG 1 cut(s) 232
FspBI CTAG 1 cut(s) 153
GlaI GCGC 2 cut(s) 102, 104
HapII CCGG 1 cut(s) 74
HgaI GACGC 3 cut(s) 61, 70, 79
HhaI GCGC 2 cut(s) 103, 105
Hin1I GRCGYC 3 cut(s) 53, 62, 71
Hin6I GCGC 2 cut(s) 101, 103
HinP1I GCGC 2 cut(s) 101, 103
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 40
Hpy99I CGWCG 5 cut(s) 52, 55, 64, 70, 73
HpyCH4III ACNGT 2 cut(s) 208, 227
HpyCH4IV ACGT 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 61, 70
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 3 cut(s) 53, 62, 71
HspAI GCGC 2 cut(s) 101, 103
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 7 cut(s) 87, 123, 150, 158, 161, 185, 202
LweI GCATC 1 cut(s) 33
MabI ACCWGGT 1 cut(s) 171
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 3 cut(s) 13, 114, 231
MseI TTAA 1 cut(s) 256
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 138, 173
MvaI CCWGG 2 cut(s) 138, 173
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 3 cut(s) 52, 61, 70
NdeII GATC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 76
PauI GCGCGC 1 cut(s) 101
PcsI WCGNNNNNNNCGW 3 cut(s) 47, 56, 65
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 136, 171
PspEI GGTNACC 1 cut(s) 76
PspGI CCWGG 2 cut(s) 136, 171
PteI GCGCGC 1 cut(s) 101
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 256
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 138, 173
SetI ASST 4 cut(s) 117, 142, 150, 177
SexAI ACCWGGT 1 cut(s) 171
SfaNI GCATC 1 cut(s) 33
SgrAI CRCCGGYG 1 cut(s) 73
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 136, 171
TaaI ACNGT 2 cut(s) 208, 227
TaiI ACGT 1 cut(s) 117
TaqI TCGA 1 cut(s) 29
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TscAI CASTG 2 cut(s) 211, 232
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspRI CASTG 2 cut(s) 211, 232
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.