Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005809

Physical Location & Seq

Genomic Coordinates Reverse (-)

5789855 .. 5792701

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG068900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTCTGCTAGAGAAGCTTTGGGATGATGTAGTAGCTGGACCTCAGCCTGAACGTGGTCTCGGCAAGCTCAGAAAGGTCACCCCTAAGCCCTTGAACATCAAAGATGAGGGAGAGTCGAGCAAGATCACGATGCCGACGACGCCGACGACGCCGGTGACCCCAACAACGCCGGTTTCGGCGCGCAAGGACAACATTTGGAGAAGTGTGTTCCACCCAGGTAGCAACCTTGCGACCAAAACGATGGGAAACCAGGTGTTTGATAGCCCACAGCCAAACTCTCCCACTGTCTATGACTGGTACGTATCGCAGTCACTTCCGATCCACGCAGATCAACTTGTAAATCCCACTGTCTATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0010033 GO:0034284 GO:0034285 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

120

Amino Acids

13.28

Weight (kDa)

6.72

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_repressed	PF05564	7 - 104	1.4e-45	Dormancy/auxin associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT1G28330 AT2G33830 AT2G33830
fragaria_vesca	FvH4_3g08830 FvH4_3g08830
malus_domestica	MD14G1054500.v1.1
prunus_persica	Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1 Prupe.4G050800_v2.0.a1
pyrus_communis	pycom05g28790 pycom10g24360
rosa_chinensis	RchiOBHm_Chr5g0008921
rosa_laevigata	RLG00000031616
rosa_multiflora	Rmu_co8458451.1_g000001 Rmu_sc0004677.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067090 Rroxscaffold_1G00067710
rosa_rugosa	Rorug04G0440200
rosa_samantha	Rh5AG068900 Rh5BG065600 Rh5CG076800 Rh5DG064600
rosa_wichuraiana	Rw5G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AclWI	GGATC	1 cut(s)	316
AcyI	GRCGYC	2 cut(s)	143, 152
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	217, 252
AluBI	AGCT	3 cut(s)	19, 38, 70
AluI	AGCT	3 cut(s)	19, 38, 70
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	184, 186
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	73, 169
AvaII	GGWCC	1 cut(s)	41
BbvCI	CCTCAGC	1 cut(s)	45
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	219, 254
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	11, 361
Bme1390I	CCNGG	2 cut(s)	219, 254
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	2 cut(s)	219, 254
BmsI	GCATC	1 cut(s)	123
Bpu10I	CCTNAGC	2 cut(s)	45, 87
BsaAI	YACGTR	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	143, 152
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	2 cut(s)	154, 172
Bse1I	ACTGG	1 cut(s)	302
BseBI	CCWGG	2 cut(s)	219, 254
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	59, 85
BseNI	ACTGG	1 cut(s)	302
BsePI	GCGCGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	155, 173
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	126, 321, 331
BspCNI	CTCAG	2 cut(s)	58, 84
BspFNI	CGCG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	2 cut(s)	154, 172
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	2 cut(s)	154, 172
BssECI	CCNNGG	1 cut(s)	217
BssHII	GCGCGC	1 cut(s)	182
BssMI	GATC	3 cut(s)	126, 321, 331
BssNI	GRCGYC	2 cut(s)	143, 152
Bst2UI	CCWGG	2 cut(s)	219, 254
Bst4CI	ACNGT	2 cut(s)	289, 352
BstACI	GRCGYC	2 cut(s)	143, 152
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	68, 184
BstDEI	CTNAG	3 cut(s)	45, 71, 87
BstEII	GGTNACC	2 cut(s)	79, 157
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	184, 186
BstKTI	GATC	3 cut(s)	129, 324, 334
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	126, 321, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 142, 151
BstNI	CCWGG	2 cut(s)	219, 254
BstPI	GGTNACC	2 cut(s)	79, 157
BstSCI	CCNGG	2 cut(s)	217, 252
BstSNI	TACGTA	1 cut(s)	304
BstUI	CGCG	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	285, 348
Cac8I	GCNNGC	2 cut(s)	68, 184
CfoI	GCGC	2 cut(s)	184, 186
Cfr10I	RCCGGY	2 cut(s)	154, 172
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	151, 160
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	301
CviJI	RGCY	7 cut(s)	19, 38, 49, 70, 91, 267, 274
CviKI_1	RGCY	7 cut(s)	19, 38, 49, 70, 91, 267, 274
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	45, 71, 87
DpnI	GATC	3 cut(s)	128, 323, 333
DpnII	GATC	3 cut(s)	126, 321, 331
Eco105I	TACGTA	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	41
Eco91I	GGTNACC	2 cut(s)	79, 157
EcoO65I	GGTNACC	2 cut(s)	79, 157
EcoRII	CCWGG	2 cut(s)	217, 252
FaiI	YATR	2 cut(s)	294, 357
FokI	GGATG	1 cut(s)	38
FspBI	CTAG	2 cut(s)	11, 361
GlaI	GCGC	2 cut(s)	183, 185
HapII	CCGG	2 cut(s)	155, 173
HgaI	GACGC	2 cut(s)	151, 160
HhaI	GCGC	2 cut(s)	184, 186
Hin1I	GRCGYC	2 cut(s)	143, 152
Hin6I	GCGC	2 cut(s)	182, 184
HinP1I	GCGC	2 cut(s)	182, 184
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	2 cut(s)	155, 173
HphI	GGTGA	2 cut(s)	73, 169
Hpy188I	TCNGA	2 cut(s)	74, 321
Hpy188III	TCNNGA	1 cut(s)	130
Hpy99I	CGWCG	4 cut(s)	142, 145, 151, 154
HpyCH4III	ACNGT	2 cut(s)	289, 352
HpyCH4IV	ACGT	2 cut(s)	55, 303
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 142, 151
HpyF3I	CTNAG	3 cut(s)	45, 71, 87
HpySE526I	ACGT	2 cut(s)	55, 303
Hsp92I	GRCGYC	2 cut(s)	143, 152
HspAI	GCGC	2 cut(s)	182, 184
Kzo9I	GATC	3 cut(s)	126, 321, 331
LpnPI	CCDG	9 cut(s)	24, 63, 168, 186, 204, 231, 239, 266, 283
LweI	GCATC	1 cut(s)	123
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	2 cut(s)	11, 361
MaeII	ACGT	2 cut(s)	55, 303
MaeIII	GTNAC	3 cut(s)	79, 157, 312
MalI	GATC	3 cut(s)	128, 323, 333
MboI	GATC	3 cut(s)	126, 321, 331
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	54, 103
MspI	CCGG	2 cut(s)	155, 173
MspR9I	CCNGG	2 cut(s)	219, 254
MvaI	CCWGG	2 cut(s)	219, 254
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	3 cut(s)	16, 142, 151
NdeII	GATC	3 cut(s)	126, 321, 331
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	3 cut(s)	79, 157, 312
PauI	GCGCGC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 146
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	217, 252
PspEI	GGTNACC	2 cut(s)	79, 157
PspGI	CCWGG	2 cut(s)	217, 252
PspPI	GGNCC	1 cut(s)	41
PteI	GCGCGC	1 cut(s)	182
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
Sau3AI	GATC	3 cut(s)	126, 321, 331
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	219, 254
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	123
SgrAI	CRCCGGYG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	41
SnaBI	TACGTA	1 cut(s)	304
SspMI	CTAG	2 cut(s)	11, 361
StyD4I	CCNGG	2 cut(s)	217, 252
TaaI	ACNGT	2 cut(s)	289, 352
TaiI	ACGT	2 cut(s)	58, 306
TaqI	TCGA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	292, 355
TseFI	GTSAC	3 cut(s)	79, 157, 312
Tsp45I	GTSAC	3 cut(s)	79, 157, 312
TspRI	CASTG	2 cut(s)	292, 355
VpaK11BI	GGWCC	1 cut(s)	41
XspI	CTAG	2 cut(s)	11, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.