Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Reverse (-)

10136246 .. 10139228

Gene Structure 2983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGTTTCAAACTCATCTCTCTCCTCCTTCTTTTTCTTCCACTTCTAACAGTCACAATCTTGTCGGGAGTCGAGCAGGCCTTTGCTTCCGACAAGGCACTCCTCGTGACCGGCCGCAACATCACGGCTGACGGTGGAAGGTCGTCACTGAGAGGGAAGAAGCAGAGGAGAGCATCAGGATGTAACTTGTTCCAAGGCCGATGGGTGTTCGATGCTTCTTACCCTTTCTATGACTCGTCCAAGTGTCCTTTCATCGACGGCGAGTTTGACTGTCTCAAGTTCGGCCGACCAGACAAACAGTTCCTCAAGTACTCTTGGCAACCTGAATCTTGCACCATCCCAAGGTTCGACGGTGGGGCATTTCTGAGGAAATACAGAGGAAAACGAGTCATGTTCGTCGGAGACTCACTGAGTTTAAACATGTGGGAATCGTTGGCCTGTATGATCCATGCGTCGGTACCAAACGCCAAGACCACTTTTCTCAAGCGTACCCCACTCTCTACTCTCACTTTCCAGGAATATGGAGTAACGTTATATCTATATAGAACACCATACATAGTAGATATATCCAAAGAGAGAGTTGGGCGTGTGCTTAACCTTGGAGCTATTGAAGGAGGTGCTGATGCTTGGAAAAACATGGACGTTCTTGTCTTCAACTCTTGGCATTGGTGGACTCACAAAGGCCAATCTCAAGGGTGGGATTATATTAGAGATGGGTCGTCTTTGGTGAGAGACATGAACCGTCTTGACGCTTTCTACAAAGGACTCAGTACTTGGGCTCGATGGGTTGATCAAAACGTCGATACGGCCAAAACTCGAGTTTTCTTCCAAGGCATTTCTCCCACTCATTACGAGGGAAGGGAATGGAACGAGCCGAGGAAGACTTGTAGTGGGCAAATGCAGCCGTTGGGTGGATCAAGTTACCCAAGTGGTCAGCCTCCATCCTCAGGAGTAGTGTCGAAAGTGTTGAGTTCGATGAAAAAGCCAGTGACCTTGCTCGATATCACAACTTTGTCTCAGTTGAGAAAAGATGCTCATCCTTCTTCTTATGGTGGCGATGGAGGAACAGATTGCAGCCATTGGTGCCTCCCAGGGTTGCCTGATACATGGAACCAACTTCTCTACGCAGCTCTTACGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

380

Amino Acids

42.71

Weight (kDa)

9.28

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	60 - 111	3.6e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	113 - 376	4.1e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	2 cut(s)	457, 1083
AciI	CCGC	1 cut(s)	115
AclI	AACGTT	1 cut(s)	530
AclWI	GGATC	2 cut(s)	439, 922
AcoI	YGGCCR	3 cut(s)	112, 283, 807
AfaI	GTAC	4 cut(s)	311, 459, 490, 772
AfiI	CCNNNNNNNGG	4 cut(s)	342, 454, 911, 947
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	3 cut(s)	10, 611, 655
AjnI	CCWGG	2 cut(s)	513, 1090
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	2 cut(s)	605, 1130
AluI	AGCT	2 cut(s)	605, 1130
Alw26I	GTCTC	4 cut(s)	278, 396, 726, 1020
AlwI	GGATC	2 cut(s)	439, 922
Ama87I	CYCGRG	1 cut(s)	816
AoxI	GGCC	7 cut(s)	78, 112, 196, 283, 435, 682, 807
ApeKI	GCWGC	3 cut(s)	901, 1074, 1127
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
Asp718I	GGTACC	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	739
AvaI	CYCGRG	1 cut(s)	816
AxyI	CCTNAGG	1 cut(s)	946
BanI	GGYRCC	2 cut(s)	457, 1083
BanII	GRGCYC	1 cut(s)	781
BauI	CACGAG	1 cut(s)	104
BbsI	GAAGAC	2 cut(s)	643, 887
BbvI	GCAGC	3 cut(s)	913, 1086, 1139
BccI	CCATC	6 cut(s)	195, 344, 707, 777, 949, 1052
BceAI	ACGGC	4 cut(s)	141, 274, 822, 889
BciT130I	CCWGG	2 cut(s)	515, 1092
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	4 cut(s)	278, 396, 726, 1020
BisI	GCNGC	4 cut(s)	115, 902, 1075, 1128
BlsI	GCNGC	4 cut(s)	116, 903, 1076, 1129
BmcAI	AGTACT	2 cut(s)	311, 772
Bme1390I	CCNGG	2 cut(s)	515, 1092
BmeT110I	CYCGRG	1 cut(s)	816
BmiI	GGNNCC	3 cut(s)	459, 1085, 1112
BmrFI	CCNGG	2 cut(s)	515, 1092
BmsI	GCATC	4 cut(s)	182, 202, 613, 1021
BpiI	GAAGAC	2 cut(s)	643, 887
BpuEI	CTTGAG	4 cut(s)	260, 290, 467, 675
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaJI	CCNNGG	7 cut(s)	193, 341, 598, 829, 875, 1090, 1091
Bsc4I	CCNNNNNNNGG	4 cut(s)	342, 454, 911, 947
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	986
Bse21I	CCTNAGG	1 cut(s)	946
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	515, 1092
BseDI	CCNNGG	7 cut(s)	193, 341, 598, 829, 875, 1090, 1091
BseGI	GGATG	4 cut(s)	185, 336, 941, 1036
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	4 cut(s)	342, 454, 911, 947
BseMII	CTCAG	6 cut(s)	140, 356, 401, 781, 960, 1031
BseNI	ACTGG	1 cut(s)	986
BseRI	GAGGAG	3 cut(s)	14, 92, 181
BseX3I	CGGCCG	2 cut(s)	112, 283
BseXI	GCAGC	3 cut(s)	913, 1086, 1139
Bsh1285I	CGRYCG	2 cut(s)	115, 286
BshFI	GGCC	7 cut(s)	80, 114, 198, 285, 437, 684, 809
BshNI	GGYRCC	2 cut(s)	457, 1083
BsiEI	CGRYCG	2 cut(s)	115, 286
BsiHKCI	CYCGRG	1 cut(s)	816
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	4 cut(s)	342, 454, 911, 947
BsmAI	GTCTC	4 cut(s)	278, 396, 726, 1020
BsnI	GGCC	7 cut(s)	80, 114, 198, 285, 437, 684, 809
BsoBI	CYCGRG	1 cut(s)	816
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	3 cut(s)	444, 790, 914
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	7 cut(s)	80, 114, 198, 285, 437, 684, 809
BspCNI	CTCAG	6 cut(s)	141, 357, 402, 780, 959, 1030
BspLI	GGNNCC	3 cut(s)	459, 1085, 1112
BspPI	GGATC	2 cut(s)	439, 922
BspT107I	GGYRCC	2 cut(s)	457, 1083
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	986
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	7 cut(s)	193, 341, 598, 829, 875, 1090, 1091
BssMI	GATC	3 cut(s)	444, 790, 914
BssSI	CACGAG	1 cut(s)	104
BssT1I	CCWWGG	4 cut(s)	193, 341, 598, 829
Bst2BI	CACGAG	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	515, 1092
Bst4CI	ACNGT	6 cut(s)	52, 134, 272, 300, 353, 743
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	6 cut(s)	149, 365, 410, 767, 946, 1017
BstF5I	GGATG	4 cut(s)	185, 336, 941, 1036
BstKTI	GATC	3 cut(s)	447, 793, 917
BstMAI	GTCTC	4 cut(s)	278, 396, 726, 1020
BstMBI	GATC	3 cut(s)	444, 790, 914
BstMCI	CGRYCG	2 cut(s)	115, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	901, 1083
BstNI	CCWGG	2 cut(s)	515, 1092
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	513, 1090
BstV1I	GCAGC	3 cut(s)	913, 1086, 1139
BstV2I	GAAGAC	2 cut(s)	643, 887
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstZI	CGGCCG	2 cut(s)	112, 283
Bsu36I	CCTNAGG	1 cut(s)	946
BsuRI	GGCC	7 cut(s)	80, 114, 198, 285, 437, 684, 809
BtgZI	GCGATG	1 cut(s)	1071
BtsCI	GGATG	4 cut(s)	185, 336, 941, 1036
BtsIMutI	CAGTG	3 cut(s)	146, 407, 993
Cac8I	GCNNGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	110
CseI	GACGC	2 cut(s)	441, 758
Csp6I	GTAC	4 cut(s)	310, 458, 489, 771
CviAII	CATG	6 cut(s)	391, 421, 449, 637, 736, 1107
CviQI	GTAC	4 cut(s)	310, 458, 489, 771
DdeI	CTNAG	6 cut(s)	149, 365, 410, 767, 946, 1017
DpnI	GATC	3 cut(s)	446, 792, 916
DpnII	GATC	3 cut(s)	444, 790, 914
DraI	TTTAAA	1 cut(s)	417
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
EaeI	YGGCCR	3 cut(s)	112, 283, 807
EagI	CGGCCG	2 cut(s)	112, 283
EclXI	CGGCCG	2 cut(s)	112, 283
Eco130I	CCWWGG	4 cut(s)	193, 341, 598, 829
Eco147I	AGGCCT	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	781
Eco32I	GATATC	1 cut(s)	1003
Eco52I	CGGCCG	2 cut(s)	112, 283
Eco81I	CCTNAGG	1 cut(s)	946
Eco88I	CYCGRG	1 cut(s)	816
EcoRII	CCWGG	2 cut(s)	513, 1090
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	4 cut(s)	193, 341, 598, 829
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	4 cut(s)	193, 341, 598, 829
FaeI	CATG	6 cut(s)	394, 424, 452, 640, 739, 1110
FatI	CATG	6 cut(s)	390, 420, 448, 636, 735, 1106
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	4 cut(s)	115, 902, 1075, 1128
FokI	GGATG	4 cut(s)	192, 323, 928, 1023
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	4 cut(s)	115, 902, 1075, 1128
GluI	GCNGC	4 cut(s)	115, 902, 1075, 1128
HaeIII	GGCC	7 cut(s)	80, 114, 198, 285, 437, 684, 809
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	2 cut(s)	441, 758
Hin1II	CATG	6 cut(s)	394, 424, 452, 640, 739, 1110
HinfI	GANTC	8 cut(s)	69, 233, 326, 387, 404, 428, 673, 765
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	1 cut(s)	672
Hpy188I	TCNGA	3 cut(s)	91, 366, 401
Hpy188III	TCNNGA	5 cut(s)	66, 106, 177, 746, 948
Hpy8I	GTNNAC	1 cut(s)	672
Hpy99I	CGWCG	5 cut(s)	260, 353, 401, 457, 803
HpyAV	CCTTC	5 cut(s)	38, 132, 605, 852, 1050
HpyCH4III	ACNGT	6 cut(s)	52, 134, 272, 300, 353, 743
HpyCH4IV	ACGT	3 cut(s)	530, 642, 798
HpyCH4V	TGCA	3 cut(s)	333, 901, 1074
HpyF10VI	GCNNNNNNNGC	2 cut(s)	901, 1083
HpyF3I	CTNAG	6 cut(s)	149, 365, 410, 767, 946, 1017
HpySE526I	ACGT	3 cut(s)	530, 642, 798
Hsp92II	CATG	6 cut(s)	394, 424, 452, 640, 739, 1110
KpnI	GGTACC	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	444, 790, 914
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	3 cut(s)	913, 1086, 1139
LweI	GCATC	4 cut(s)	182, 202, 613, 1021
MaeII	ACGT	3 cut(s)	530, 642, 798
MaeIII	GTNAC	7 cut(s)	52, 106, 144, 182, 526, 920, 988
MalI	GATC	3 cut(s)	446, 792, 916
MboI	GATC	3 cut(s)	444, 790, 914
MboII	GAAGA	6 cut(s)	29, 169, 643, 817, 892, 1035
MhlI	GDGCHC	1 cut(s)	781
MlyI	GAGTC	6 cut(s)	78, 227, 396, 398, 667, 759
MmeI	TCCRAC	2 cut(s)	114, 379
MseI	TTAA	2 cut(s)	416, 594
MslI	CAYNNNNRTG	1 cut(s)	178
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	515, 1092
MssI	GTTTAAAC	1 cut(s)	417
MvaI	CCWGG	2 cut(s)	515, 1092
MwoI	GCNNNNNNNGC	2 cut(s)	901, 1083
NdeII	GATC	3 cut(s)	444, 790, 914
NlaIII	CATG	6 cut(s)	394, 424, 452, 640, 739, 1110
NlaIV	GGNNCC	3 cut(s)	459, 1085, 1112
NmeAIII	GCCGAG	1 cut(s)	900
NmuCI	GTSAC	4 cut(s)	52, 106, 144, 988
NspI	RCATGY	1 cut(s)	424
PaeR7I	CTCGAG	1 cut(s)	816
PasI	CCCWGGG	1 cut(s)	1091
PceI	AGGCCT	1 cut(s)	80
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	326, 428
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	4 cut(s)	116, 903, 1076, 1129
PleI	GAGTC	6 cut(s)	77, 227, 395, 398, 667, 759
PmeI	GTTTAAAC	1 cut(s)	417
PpsI	GAGTC	6 cut(s)	77, 227, 395, 398, 667, 759
PscI	ACATGT	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	513, 1090
PspGI	CCWGG	2 cut(s)	513, 1090
PspN4I	GGNNCC	3 cut(s)	459, 1085, 1112
PspXI	VCTCGAGB	1 cut(s)	816
RsaI	GTAC	4 cut(s)	311, 459, 490, 772
RsaNI	GTAC	4 cut(s)	310, 458, 489, 771
RseI	CAYNNNNRTG	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	416, 594
SatI	GCNGC	4 cut(s)	115, 902, 1075, 1128
Sau3AI	GATC	3 cut(s)	444, 790, 914
ScaI	AGTACT	2 cut(s)	311, 772
SchI	GAGTC	6 cut(s)	78, 227, 396, 398, 667, 759
ScrFI	CCNGG	2 cut(s)	515, 1092
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	4 cut(s)	182, 202, 613, 1021
Sfr274I	CTCGAG	1 cut(s)	816
SlaI	CTCGAG	1 cut(s)	816
SmiMI	CAYNNNNRTG	1 cut(s)	178
SmlI	CTYRAG	5 cut(s)	275, 305, 482, 690, 816
SmoI	CTYRAG	5 cut(s)	275, 305, 482, 690, 816
SseBI	AGGCCT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	115
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	513, 1090
StyI	CCWWGG	4 cut(s)	193, 341, 598, 829
TaaI	ACNGT	6 cut(s)	52, 134, 272, 300, 353, 743
TaiI	ACGT	3 cut(s)	533, 645, 801
TatI	WGTACW	2 cut(s)	309, 770
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	326, 428
Tru1I	TTAA	2 cut(s)	416, 594
Tru9I	TTAA	2 cut(s)	416, 594
TscAI	CASTG	3 cut(s)	153, 414, 993
TseFI	GTSAC	4 cut(s)	52, 106, 144, 988
TseI	GCWGC	3 cut(s)	901, 1074, 1127
Tsp45I	GTSAC	4 cut(s)	52, 106, 144, 988
TspDTI	ATGAA	3 cut(s)	241, 752, 992
TspRI	CASTG	3 cut(s)	153, 414, 993
XceI	RCATGY	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	816
ZrmI	AGTACT	2 cut(s)	311, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.