Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Reverse (-)

23354649 .. 23359366

Gene Structure 4718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG206000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCATTCTCGTGCTTTCACCTTCTTCCTCTAGTACTACTGCCATTGACACTAAACCAAGTAGTGAATGGGAATCCAGTTTTTGATGATGGAGATTCAGTTCTCGATTATGCAGAAGGAGCTGGAGTACTGATGAAGCAGTCATCACATGGCTGCAATTTTTTTCAAGGGAGTTGGGTTGCTGACGATGAATACCCACTTTACAATGCTTCAAGCTGTCCATTCATTGGATTCAATTGCATAAAGAATGGTAGACCTGATAAACAGTACTTCAAATATAGATGGAAGCCTACTGGTTGTGACCTTCCAAGATTCAATGGACTGGATTTCATGGAAAGATACAGAGGGAAAAAGATAATGTTTGTGGGAGACTCCCTAAGTAACAATATGTGGCAGTCCCTTACATGCATGCTACATGTTGCAGCCCCAAACTCCAATTACACCTTAATCCAAGCAGGGTTGCTTTCCACATTTTACCTCAAGGAATATGCACTGTCGGTTATGTTTTTGAAAAATGGGTTCATAGTGGACTTGGCTTATGAAAAAATAGGCAAAGTCCTAAAACTTGACTCCATCAGCACCGGCAACCTGTGGAAAGGAGTAGACATGTTGATCTTCACCACATATCACTGGTGGACTCATTCCGGCCATTCTCAGACATGGAACTACTTTCAAGTGGGACAAAAGATGGTGAAAGAAATGGATCACATGGAGGCCTACAAGATTGCATTAACAACTTGGGCTAAATGGGTTGATTCCAACATTGATTTTTCAAAGACCAAAGTCTTTTTTCAAGGGGTTGCTGCAGTTCATATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

273

Amino Acids

31.2

Weight (kDa)

7.07

Isoelectric Point (pI)

23.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	51 - 101	1.6e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	102 - 273	3.2e-52	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	2 cut(s)	253, 603
AclWI	GGATC	1 cut(s)	711
AcoI	YGGCCR	1 cut(s)	646
AfaI	GTAC	3 cut(s)	36, 129, 269
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	2 cut(s)	415, 606
AgsI	TTSAA	9 cut(s)	167, 213, 235, 274, 316, 511, 674, 774, 794
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	2 cut(s)	122, 216
AluI	AGCT	2 cut(s)	122, 216
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	711
AoxI	GGCC	2 cut(s)	646, 714
ApeKI	GCWGC	3 cut(s)	153, 422, 803
AsuHPI	GGTGA	3 cut(s)	11, 610, 703
BauI	CACGAG	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	140, 434, 790
BccI	CCATC	4 cut(s)	83, 276, 581, 682
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	804
BisI	GCNGC	3 cut(s)	154, 423, 804
BlsI	GCNGC	3 cut(s)	155, 424, 805
BmcAI	AGTACT	3 cut(s)	36, 129, 269
BoxI	GACNNNNGTC	1 cut(s)	782
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	464
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 111, 114, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	4 cut(s)	77, 298, 327, 635
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	4 cut(s)	77, 298, 327, 635
BseXI	GCAGC	3 cut(s)	140, 434, 790
BshFI	GGCC	2 cut(s)	648, 716
BsiSI	CCGG	2 cut(s)	582, 645
BslFI	GGGAC	2 cut(s)	382, 693
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	2 cut(s)	382, 693
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	648, 716
Bsp143I	GATC	2 cut(s)	612, 703
BspANI	GGCC	2 cut(s)	648, 716
BspCNI	CTCAG	1 cut(s)	667
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	4 cut(s)	77, 298, 327, 635
BssAI	RCCGGY	1 cut(s)	581
BssMI	GATC	2 cut(s)	612, 703
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	267, 495
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	377, 654
BstKTI	GATC	2 cut(s)	615, 706
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	2 cut(s)	612, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	4 cut(s)	408, 412, 419, 610
BstPAI	GACNNNNGTC	1 cut(s)	782
BstSFI	CTRYAG	1 cut(s)	804
BstV1I	GCAGC	3 cut(s)	140, 434, 790
BsuRI	GGCC	2 cut(s)	648, 716
BtsIMutI	CAGTG	2 cut(s)	491, 628
Cac8I	GCNNGC	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	581
Csp6I	GTAC	3 cut(s)	35, 128, 268
CviAII	CATG	8 cut(s)	149, 331, 405, 409, 416, 607, 660, 709
CviJI	RGCY	9 cut(s)	122, 153, 216, 289, 425, 536, 648, 716, 743
CviKI_1	RGCY	9 cut(s)	122, 153, 216, 289, 425, 536, 648, 716, 743
CviQI	GTAC	3 cut(s)	35, 128, 268
DdeI	CTNAG	2 cut(s)	377, 654
DpnI	GATC	2 cut(s)	614, 705
DpnII	GATC	2 cut(s)	612, 703
EaeI	YGGCCR	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	716
EcoT22I	ATGCAT	1 cut(s)	410
FaeI	CATG	8 cut(s)	152, 334, 408, 412, 419, 610, 663, 712
FaqI	GGGAC	2 cut(s)	382, 693
FatI	CATG	8 cut(s)	148, 330, 404, 408, 415, 606, 659, 708
FblI	GTMKAC	2 cut(s)	253, 603
Fnu4HI	GCNGC	3 cut(s)	154, 423, 804
Fsp4HI	GCNGC	3 cut(s)	154, 423, 804
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	3 cut(s)	154, 423, 804
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	648, 716
HapII	CCGG	2 cut(s)	582, 645
Hin1II	CATG	8 cut(s)	152, 334, 408, 412, 419, 610, 663, 712
HinfI	GANTC	8 cut(s)	73, 95, 231, 312, 371, 569, 637, 755
HpaII	CCGG	2 cut(s)	582, 645
HphI	GGTGA	3 cut(s)	11, 610, 703
Hpy166II	GTNNAC	4 cut(s)	254, 529, 604, 636
Hpy188I	TCNGA	1 cut(s)	657
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	4 cut(s)	254, 529, 604, 636
HpyAV	CCTTC	3 cut(s)	32, 110, 314
HpyCH4III	ACNGT	2 cut(s)	267, 495
HpyCH4V	TGCA	8 cut(s)	113, 156, 240, 408, 422, 491, 728, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	377, 654
Hsp92II	CATG	8 cut(s)	152, 334, 408, 412, 419, 610, 663, 712
Kzo9I	GATC	2 cut(s)	612, 703
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	3 cut(s)	140, 434, 790
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	299, 380
MalI	GATC	2 cut(s)	614, 705
MboI	GATC	2 cut(s)	612, 703
MboII	GAAGA	2 cut(s)	17, 607
MfeI	CAATTG	1 cut(s)	235
MluCI	AATT	3 cut(s)	157, 235, 436
MlyI	GAGTC	3 cut(s)	365, 563, 631
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	4 cut(s)	39, 338, 488, 706
Mph1103I	ATGCAT	1 cut(s)	410
MseI	TTAA	2 cut(s)	446, 731
MslI	CAYNNNNRTG	1 cut(s)	10
MspI	CCGG	2 cut(s)	582, 645
MunI	CAATTG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	612, 703
NlaIII	CATG	8 cut(s)	152, 334, 408, 412, 419, 610, 663, 712
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	410
NspI	RCATGY	4 cut(s)	408, 412, 419, 610
PaeI	GCATGC	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	716
PciI	ACATGT	2 cut(s)	415, 606
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	5 cut(s)	73, 95, 231, 312, 755
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	155, 424, 805
PleI	GAGTC	3 cut(s)	365, 563, 631
PpsI	GAGTC	3 cut(s)	365, 563, 631
PscI	ACATGT	2 cut(s)	415, 606
PshAI	GACNNNNGTC	1 cut(s)	782
PstI	CTGCAG	1 cut(s)	808
RsaI	GTAC	3 cut(s)	36, 129, 269
RsaNI	GTAC	3 cut(s)	35, 128, 268
RseI	CAYNNNNRTG	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	446, 731
SatI	GCNGC	3 cut(s)	154, 423, 804
Sau3AI	GATC	2 cut(s)	612, 703
ScaI	AGTACT	3 cut(s)	36, 129, 269
SchI	GAGTC	3 cut(s)	365, 563, 631
SetI	ASST	8 cut(s)	24, 124, 218, 259, 306, 446, 480, 591
SfcI	CTRYAG	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SphI	GCATGC	1 cut(s)	412
Sse9I	AATT	3 cut(s)	157, 235, 436
SseBI	AGGCCT	1 cut(s)	716
SspMI	CTAG	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	716
TaaI	ACNGT	2 cut(s)	267, 495
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	157, 235, 436
TatI	WGTACW	3 cut(s)	34, 127, 267
TfiI	GAWTC	5 cut(s)	73, 95, 231, 312, 755
Tru1I	TTAA	2 cut(s)	446, 731
Tru9I	TTAA	2 cut(s)	446, 731
TscAI	CASTG	2 cut(s)	498, 635
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	153, 422, 803
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	7 cut(s)	149, 204, 214, 319, 511, 555, 800
TspRI	CASTG	2 cut(s)	498, 635
Van91I	CCANNNNNTGG	1 cut(s)	227
XceI	RCATGY	4 cut(s)	408, 412, 419, 610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	253, 603
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	3 cut(s)	36, 129, 269
Zsp2I	ATGCAT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.