Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Reverse (-)

2833135 .. 2836881

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G059400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTTTTAGGCTCCAAGCTCTGTCATGCCTTGTAGCTCTTCAAGTTCTGGTCTTGTTTTCAGATGAAGCAAGCTCTGCAGGACATGGACATGGCGCCAGAATTTCCAGACAAAGAAAGCAAGCGACTGGCTGCAATCTGTTCCAAGGCAATTGGGCTTTTGATGCTTCTTACCCCCTCTATGATTCTTCCAGCTGTCCCTTCATAGATCCTGAGTTTGACTGCATCAAGTATGGCAGACCAGATAAGCAGTTCCTCAAGTATGCTTGGAAGCCTGACTCTTGTGACTTGCCCAGGTTTGATGGGTTGGATTTTCTGAGGAGGTGGAAGGGGAAGAAAATAATGTTTGTGGGTGACTCACTGAGTCTCAACATGTGGGAATCGTTGTCTTGTATGATCCATGCGTCGGTGCCTAATGCCAAGACCACCTTCAAAAAGGGGTATTCTGTGAACTTTCAGGACTATGGAGTGACTTTGTTTATGTTCCGCACACCATACCTTGTAGATATAGTCAGAGAAAATGTTGGCCGTGTGTTAAACCTGGGCTCCATCAACGCTGGAAATTCATGGAAAGACATGGACGTGTTGATCTTCAATTCCTGGCATTGGTGGACCCATACAGGCAAATCTCAGCCATGGGACTATGTTCGGGATGGGACAAACTTGTACAGAGATATGGATCGTTTGACAGCATTTTATAAGGGGCTCTCCACATGGGCCAAATGGGTTGACTCAAATGTTGATCCTTCAAAGACCAGAGTCTTCTTCCAAGGGATTTCTCCAACCCATTATCAGGGCCAGGAATGGAATTCTCCGAAGAAGAGTTGCTATGGAGAACTTGGACCTCTATCTGGAACAACATACCCAGCAGGGCCACCTCCAGCTTATGCTGTTGTAAATAAGGTGTTAAGCACGATTAAGAATCCGGTTTACTTGCTCGACATTACGACACTCTCACAATTAAGAAAAGATGCTCATCCCTCAACTTATAGTGGCGACCACTCCGGCAACGACTGCAGCCACTGGTGCCTACCTGGGTTGCCGGATACTTGGAACCAACTCCTATATGCTGCTCTCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

362

Amino Acids

40.93

Weight (kDa)

8.6

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	699
AccB1I	GGYRCC	3 cut(s)	95, 409, 1026
AciI	CCGC	1 cut(s)	487
AclWI	GGATC	4 cut(s)	203, 391, 687, 737
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	3 cut(s)	102, 562, 808
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	4 cut(s)	406, 606, 793, 851
AflIII	ACRYGT	2 cut(s)	372, 582
AgsI	TTSAA	4 cut(s)	44, 433, 595, 750
AjiI	CACGTC	1 cut(s)	583
AjnI	CCWGG	5 cut(s)	293, 540, 599, 798, 1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	5 cut(s)	20, 38, 75, 195, 884
AluI	AGCT	5 cut(s)	20, 38, 75, 195, 884
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	4 cut(s)	203, 391, 687, 737
AlwNI	CAGNNNCTG	1 cut(s)	1023
AoxI	GGCC	4 cut(s)	526, 717, 796, 872
ApeKI	GCWGC	3 cut(s)	132, 1017, 1070
ApoI	RAATTY	3 cut(s)	102, 562, 808
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	5 cut(s)	612, 717, 796, 842, 872
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	2 cut(s)	612, 842
BanI	GGYRCC	3 cut(s)	95, 409, 1026
BanII	GRGCYC	2 cut(s)	548, 708
BbsI	GAAGAC	1 cut(s)	754
BbvI	GCAGC	3 cut(s)	119, 1029, 1057
BccI	CCATC	3 cut(s)	296, 557, 647
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	5 cut(s)	295, 542, 601, 800, 1035
BciVI	GTATCC	1 cut(s)	1039
BcoDI	GTCTC	1 cut(s)	371
BfmI	CTRYAG	2 cut(s)	78, 1015
BfoI	RGCGCY	1 cut(s)	99
BfuI	GTATCC	1 cut(s)	1039
BisI	GCNGC	3 cut(s)	133, 1018, 1071
BlsI	GCNGC	3 cut(s)	134, 1019, 1072
Bme1390I	CCNGG	5 cut(s)	295, 542, 601, 800, 1035
Bme18I	GGWCC	2 cut(s)	612, 842
BmgBI	CACGTC	1 cut(s)	583
BmgT120I	GGNCC	5 cut(s)	612, 717, 796, 842, 872
BmiI	GGNNCC	7 cut(s)	14, 97, 411, 547, 614, 1028, 1055
BmrFI	CCNGG	5 cut(s)	295, 542, 601, 800, 1035
BmsI	GCATC	3 cut(s)	154, 234, 961
BoxI	GACNNNNGTC	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	754
BpmI	CTGGAG	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	678, 975
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	6 cut(s)	145, 293, 541, 635, 769, 1034
BsaWI	WCCGGW	1 cut(s)	925
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	4 cut(s)	406, 606, 793, 851
Bse1I	ACTGG	2 cut(s)	133, 1028
Bse8I	GATNNNNATC	2 cut(s)	678, 975
BseBI	CCWGG	5 cut(s)	295, 542, 601, 800, 1035
BseDI	CCNNGG	6 cut(s)	145, 293, 541, 635, 769, 1034
BseGI	GGATG	2 cut(s)	658, 976
BseJI	GATNNNNATC	2 cut(s)	678, 975
BseLI	CCNNNNNNNGG	4 cut(s)	406, 606, 793, 851
BseMII	CTCAG	4 cut(s)	204, 308, 353, 644
BseNI	ACTGG	2 cut(s)	133, 1028
BseRI	GAGGAG	1 cut(s)	334
BseXI	GCAGC	3 cut(s)	119, 1029, 1057
BseYI	CCCAGC	1 cut(s)	865
BshFI	GGCC	4 cut(s)	528, 719, 798, 874
BshNI	GGYRCC	3 cut(s)	95, 409, 1026
BsiSI	CCGG	3 cut(s)	926, 1005, 1043
BslFI	GGGAC	3 cut(s)	183, 653, 670
BslI	CCNNNNNNNGG	4 cut(s)	406, 606, 793, 851
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	3 cut(s)	183, 653, 670
BsnI	GGCC	4 cut(s)	528, 719, 798, 874
Bsp1286I	GDGCHC	2 cut(s)	548, 708
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	5 cut(s)	208, 396, 588, 679, 742
Bsp19I	CCATGG	1 cut(s)	635
BspACI	CCGC	1 cut(s)	487
BspANI	GGCC	4 cut(s)	528, 719, 798, 874
BspCNI	CTCAG	4 cut(s)	205, 309, 354, 643
BspLI	GGNNCC	7 cut(s)	14, 97, 411, 547, 614, 1028, 1055
BspMAI	CTGCAG	2 cut(s)	82, 1019
BspPI	GGATC	4 cut(s)	203, 391, 687, 737
BspQI	GCTCTTC	1 cut(s)	45
BspT107I	GGYRCC	3 cut(s)	95, 409, 1026
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	133, 1028
BssECI	CCNNGG	6 cut(s)	145, 293, 541, 635, 769, 1034
BssMI	GATC	5 cut(s)	208, 396, 588, 679, 742
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	3 cut(s)	145, 635, 769
Bst2UI	CCWGG	5 cut(s)	295, 542, 601, 800, 1035
Bst6I	CTCTTC	2 cut(s)	45, 815
BstACI	GRCGYC	1 cut(s)	96
BstAPI	GCANNNNNTGC	2 cut(s)	77, 1014
BstAUI	TGTACA	1 cut(s)	666
BstC8I	GCNNGC	2 cut(s)	73, 123
BstDEI	CTNAG	4 cut(s)	213, 317, 362, 630
BstDSI	CCRYGG	1 cut(s)	635
BstF5I	GGATG	2 cut(s)	658, 976
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	5 cut(s)	211, 399, 591, 682, 745
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	5 cut(s)	208, 396, 588, 679, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 164, 1014, 1026
BstNI	CCWGG	5 cut(s)	295, 542, 601, 800, 1035
BstNSI	RCATGY	1 cut(s)	376
BstPAI	GACNNNNGTC	1 cut(s)	758
BstSCI	CCNGG	5 cut(s)	293, 540, 599, 798, 1033
BstSFI	CTRYAG	2 cut(s)	78, 1015
BstV1I	GCAGC	3 cut(s)	119, 1029, 1057
BstV2I	GAAGAC	1 cut(s)	754
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	1039
BsuRI	GGCC	4 cut(s)	528, 719, 798, 874
BtgI	CCRYGG	1 cut(s)	635
BtrI	CACGTC	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	658, 976
BtsIMutI	CAGTG	2 cut(s)	359, 1021
Cac8I	GCNNGC	2 cut(s)	73, 123
CaiI	CAGNNNCTG	1 cut(s)	1023
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	5 cut(s)	612, 717, 796, 842, 872
CseI	GACGC	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	667
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	4 cut(s)	213, 317, 362, 630
DinI	GGCGCC	1 cut(s)	97
DpnI	GATC	5 cut(s)	210, 398, 590, 681, 744
DpnII	GATC	5 cut(s)	208, 396, 588, 679, 742
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	2 cut(s)	45, 815
EarI	CTCTTC	2 cut(s)	45, 815
Eco130I	CCWWGG	3 cut(s)	145, 635, 769
Eco24I	GRGCYC	2 cut(s)	548, 708
Eco47I	GGWCC	2 cut(s)	612, 842
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	5 cut(s)	293, 540, 599, 798, 1033
EcoT14I	CCWWGG	3 cut(s)	145, 635, 769
EcoT38I	GRGCYC	2 cut(s)	548, 708
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
ErhI	CCWWGG	3 cut(s)	145, 635, 769
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	3 cut(s)	183, 653, 670
Fnu4HI	GCNGC	3 cut(s)	133, 1018, 1071
FokI	GGATG	2 cut(s)	665, 963
FriOI	GRGCYC	2 cut(s)	548, 708
Fsp4HI	GCNGC	3 cut(s)	133, 1018, 1071
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	3 cut(s)	133, 1018, 1071
GsaI	CCCAGC	1 cut(s)	869
GsuI	CTGGAG	1 cut(s)	864
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	528, 719, 798, 874
HapII	CCGG	3 cut(s)	926, 1005, 1043
HgaI	GACGC	1 cut(s)	393
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HinfI	GANTC	8 cut(s)	185, 278, 356, 364, 380, 731, 759, 922
HpaII	CCGG	3 cut(s)	926, 1005, 1043
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	4 cut(s)	451, 612, 730, 931
Hpy188I	TCNGA	4 cut(s)	64, 318, 515, 816
Hpy188III	TCNNGA	5 cut(s)	108, 212, 458, 650, 852
Hpy8I	GTNNAC	4 cut(s)	451, 612, 730, 931
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	4 cut(s)	211, 322, 439, 756
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	4 cut(s)	80, 135, 225, 1017
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 164, 1014, 1026
HpyF3I	CTNAG	4 cut(s)	213, 317, 362, 630
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	1 cut(s)	96
HspAI	GCGC	1 cut(s)	96
KasI	GGCGCC	1 cut(s)	95
Kzo9I	GATC	5 cut(s)	208, 396, 588, 679, 742
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	2 cut(s)	18, 551
Lsp1109I	GCAGC	3 cut(s)	119, 1029, 1057
LweI	GCATC	3 cut(s)	154, 234, 961
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	3 cut(s)	284, 353, 469
MalI	GATC	5 cut(s)	210, 398, 590, 681, 744
MboI	GATC	5 cut(s)	208, 396, 588, 679, 742
MboII	GAAGA	8 cut(s)	32, 180, 346, 583, 754, 757, 829, 832
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	548, 708
MluCI	AATT	6 cut(s)	102, 151, 562, 595, 808, 959
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	5 cut(s)	272, 350, 373, 725, 768
MmeI	TCCRAC	2 cut(s)	288, 806
MnlI	CCTC	7 cut(s)	188, 266, 312, 315, 855, 888, 991
MseI	TTAA	4 cut(s)	536, 908, 918, 962
MslI	CAYNNNNRTG	2 cut(s)	90, 581
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	926, 1005, 1043
MspR9I	CCNGG	5 cut(s)	295, 542, 601, 800, 1035
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	5 cut(s)	295, 542, 601, 800, 1035
MwoI	GCNNNNNNNGC	4 cut(s)	77, 164, 1014, 1026
NarI	GGCGCC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	5 cut(s)	208, 396, 588, 679, 742
NlaIV	GGNNCC	7 cut(s)	14, 97, 411, 547, 614, 1028, 1055
NmuCI	GTSAC	3 cut(s)	284, 353, 469
NspI	RCATGY	1 cut(s)	376
PciI	ACATGT	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	185, 380, 922
PkrI	GCNGC	3 cut(s)	134, 1019, 1072
PleI	GAGTC	5 cut(s)	272, 350, 372, 725, 767
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	5 cut(s)	272, 350, 372, 725, 767
PscI	ACATGT	1 cut(s)	372
PshAI	GACNNNNGTC	1 cut(s)	758
PsiI	TTATAA	1 cut(s)	699
Psp6I	CCWGG	5 cut(s)	293, 540, 599, 798, 1033
PspFI	CCCAGC	1 cut(s)	865
PspGI	CCWGG	5 cut(s)	293, 540, 599, 798, 1033
PspN4I	GGNNCC	7 cut(s)	14, 97, 411, 547, 614, 1028, 1055
PspPI	GGNCC	5 cut(s)	612, 717, 796, 842, 872
PstI	CTGCAG	2 cut(s)	82, 1019
PstNI	CAGNNNCTG	1 cut(s)	1023
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	195
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	2 cut(s)	90, 581
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	536, 908, 918, 962
SatI	GCNGC	3 cut(s)	133, 1018, 1071
Sau3AI	GATC	5 cut(s)	208, 396, 588, 679, 742
Sau96I	GGNCC	5 cut(s)	612, 717, 796, 842, 872
SchI	GAGTC	5 cut(s)	272, 350, 373, 725, 768
ScrFI	CCNGG	5 cut(s)	295, 542, 601, 800, 1035
SduI	GDGCHC	2 cut(s)	548, 708
SfaNI	GCATC	3 cut(s)	154, 234, 961
SfcI	CTRYAG	2 cut(s)	78, 1015
SfoI	GGCGCC	1 cut(s)	97
SinI	GGWCC	2 cut(s)	612, 842
SmiMI	CAYNNNNRTG	2 cut(s)	90, 581
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	6 cut(s)	102, 151, 562, 595, 808, 959
SsiI	CCGC	1 cut(s)	487
SspDI	GGCGCC	1 cut(s)	95
StyD4I	CCNGG	5 cut(s)	293, 540, 599, 798, 1033
StyI	CCWWGG	3 cut(s)	145, 635, 769
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	1 cut(s)	939
TasI	AATT	6 cut(s)	102, 151, 562, 595, 808, 959
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	3 cut(s)	185, 380, 922
Tru1I	TTAA	4 cut(s)	536, 908, 918, 962
Tru9I	TTAA	4 cut(s)	536, 908, 918, 962
TscAI	CASTG	2 cut(s)	366, 1028
TseFI	GTSAC	3 cut(s)	284, 353, 469
TseI	GCWGC	3 cut(s)	132, 1017, 1070
Tsp45I	GTSAC	3 cut(s)	284, 353, 469
TspDTI	ATGAA	3 cut(s)	81, 193, 555
TspRI	CASTG	2 cut(s)	366, 1028
VpaK11BI	GGWCC	2 cut(s)	612, 842
XapI	RAATTY	3 cut(s)	102, 562, 808
XceI	RCATGY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.