Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8488479.1

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2441

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8488479.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 865 bp

gtacggaaggccagacaagcagttcctcaagtacgcatggaaacccgactcttgcaacctgccaaggtttgatgggagtgattttctgaagagatggagtgggaagaagataatgttcgtgggggactcactgagtctgaacatgtgggaatcgttgtcgtgtatgatacatgcgtcggtgccaaatgctaggaacacttttgtgaagaaggactcgatatcatctgtgaactttcaggattatggagtgaccttgtatctattccgcacgccgtatcttgtagatattgttagagaagacgtcggccgtgtgttgaagctggactccatcgaggccggaaagtattggaaagacatggacatgttgatcttcaactcatggcattggtggacccataagggaaaagatcgcccatttgattattttcaggacgggacaaacttgtacgaagatatggaccgtttgacagcatatctcaaggggctttccacttgggcaaaatgggttgacacaaatgttaatccttctaagaccaaagttttctttcaggggatttctccgacccattaccagggccgggaatggaactccccgaagaagaattgccagggagaacttgggccgctaactggatcgacatacccagcaggggcacctccagaagctggtgttgtaagtagagtgttgagtactattaagaatccagtttatttgctcgacattactacactctcacagttaaggaaggatgctcatccctcaacatatagcggcgaccattcaggtaacgattgcagccactggtgtctgcctgggttgcctgatacatggaaccaactcttatatgcatcactcatcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

287

Amino Acids

32.88

Weight (kDa)

8.46

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	304
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	2 cut(s)	179, 653
AccB7I	CCANNNNNTGG	1 cut(s)	666
AciI	CCGC	3 cut(s)	266, 624, 772
AclWI	GGATC	1 cut(s)	641
AcoI	YGGCCR	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	4 cut(s)	3, 33, 447, 692
AfiI	CCNNNNNNNGG	5 cut(s)	572, 578, 630, 650, 666
AflIII	ACRYGT	2 cut(s)	142, 361
AgsI	TTSAA	2 cut(s)	317, 374
AjnI	CCWGG	3 cut(s)	571, 607, 812
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	320, 666
AluI	AGCT	2 cut(s)	320, 666
AlwI	GGATC	1 cut(s)	641
AlwNI	CAGNNNCTG	2 cut(s)	666, 802
AoxI	GGCC	5 cut(s)	9, 305, 334, 575, 621
ApeKI	GCWGC	1 cut(s)	796
AspS9I	GGNCC	4 cut(s)	391, 458, 575, 621
AsuC2I	CCSGG	1 cut(s)	579
AvaII	GGWCC	2 cut(s)	391, 458
BaeGI	GKGCMC	1 cut(s)	656
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BanI	GGYRCC	2 cut(s)	179, 653
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	808
BccI	CCATC	3 cut(s)	66, 88, 336
BceAI	ACGGC	2 cut(s)	257, 292
BciT130I	CCWGG	3 cut(s)	573, 609, 814
BcnI	CCSGG	1 cut(s)	579
BfaI	CTAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	3 cut(s)	624, 773, 797
BlsI	GCNGC	3 cut(s)	625, 774, 798
BmcAI	AGTACT	1 cut(s)	692
Bme1390I	CCNGG	4 cut(s)	573, 579, 609, 814
Bme18I	GGWCC	2 cut(s)	391, 458
BmgT120I	GGNCC	4 cut(s)	391, 458, 575, 621
BmiI	GGNNCC	4 cut(s)	181, 393, 655, 834
BmrFI	CCNGG	4 cut(s)	573, 579, 609, 814
BmsI	GCATC	2 cut(s)	740, 858
BpiI	GAAGAC	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	643
BpuEI	CTTGAG	2 cut(s)	12, 462
BpuMI	CCSGG	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	754
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	4 cut(s)	63, 572, 608, 813
Bsc4I	CCNNNNNNNGG	5 cut(s)	572, 578, 630, 650, 666
Bse1I	ACTGG	3 cut(s)	635, 705, 807
Bse8I	GATNNNNATC	1 cut(s)	754
BseBI	CCWGG	3 cut(s)	573, 609, 814
BseDI	CCNNGG	4 cut(s)	63, 572, 608, 813
BseGI	GGATG	2 cut(s)	755, 755
BseJI	GATNNNNATC	1 cut(s)	754
BseLI	CCNNNNNNNGG	5 cut(s)	572, 578, 630, 650, 666
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	3 cut(s)	635, 705, 807
BseSI	GKGCMC	1 cut(s)	656
BseX3I	CGGCCG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	808
BseYI	CCCAGC	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	5 cut(s)	11, 307, 336, 577, 623
BshNI	GGYRCC	2 cut(s)	179, 653
BsiEI	CGRYCG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	337, 578
BslFI	GGGAC	2 cut(s)	138, 449
BslI	CCNNNNNNNGG	5 cut(s)	572, 578, 630, 650, 666
BsmFI	GGGAC	2 cut(s)	138, 449
BsnI	GGCC	5 cut(s)	11, 307, 336, 577, 623
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp143I	GATC	3 cut(s)	367, 407, 633
BspACI	CCGC	3 cut(s)	266, 624, 772
BspANI	GGCC	5 cut(s)	11, 307, 336, 577, 623
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	181, 393, 655, 834
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	641
BspT107I	GGYRCC	2 cut(s)	179, 653
BsrI	ACTGG	3 cut(s)	635, 705, 807
BssECI	CCNNGG	4 cut(s)	63, 572, 608, 813
BssMI	GATC	3 cut(s)	367, 407, 633
BssNI	GRCGYC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	3 cut(s)	573, 609, 814
Bst4CI	ACNGT	2 cut(s)	462, 739
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	132, 529
BstF5I	GGATG	2 cut(s)	755, 755
BstKTI	GATC	3 cut(s)	370, 410, 636
BstMBI	GATC	3 cut(s)	367, 407, 633
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 818
BstNI	CCWGG	3 cut(s)	573, 609, 814
BstNSI	RCATGY	3 cut(s)	146, 174, 365
BstSCI	CCNGG	4 cut(s)	571, 577, 607, 812
BstSLI	GKGCMC	1 cut(s)	656
BstV1I	GCAGC	1 cut(s)	808
BstV2I	GAAGAC	1 cut(s)	304
BstZI	CGGCCG	1 cut(s)	305
BsuRI	GGCC	5 cut(s)	11, 307, 336, 577, 623
BtsCI	GGATG	2 cut(s)	755, 755
BtsIMutI	CAGTG	2 cut(s)	129, 800
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	2 cut(s)	666, 802
Cfr13I	GGNCC	4 cut(s)	391, 458, 575, 621
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	4 cut(s)	2, 32, 446, 691
CviAII	CATG	8 cut(s)	37, 143, 171, 356, 362, 379, 829, 860
CviJI	RGCY	9 cut(s)	11, 307, 320, 336, 485, 577, 623, 666, 799
CviKI_1	RGCY	9 cut(s)	11, 307, 320, 336, 485, 577, 623, 666, 799
CviQI	GTAC	4 cut(s)	2, 32, 446, 691
DdeI	CTNAG	2 cut(s)	132, 529
DpnI	GATC	3 cut(s)	369, 409, 635
DpnII	GATC	3 cut(s)	367, 407, 633
EaeI	YGGCCR	1 cut(s)	305
EagI	CGGCCG	1 cut(s)	305
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
EclXI	CGGCCG	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	391, 458
Eco52I	CGGCCG	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	108
EcoRII	CCWGG	3 cut(s)	571, 607, 812
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	851
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	8 cut(s)	40, 146, 174, 359, 365, 382, 832, 863
FaqI	GGGAC	2 cut(s)	138, 449
FatI	CATG	8 cut(s)	36, 142, 170, 355, 361, 378, 828, 859
Fnu4HI	GCNGC	3 cut(s)	624, 773, 797
FokI	GGATG	2 cut(s)	742, 762
Fsp4HI	GCNGC	3 cut(s)	624, 773, 797
FspBI	CTAG	1 cut(s)	190
GluI	GCNGC	3 cut(s)	624, 773, 797
GsaI	CCCAGC	1 cut(s)	648
GsuI	CTGGAG	1 cut(s)	643
HaeIII	GGCC	5 cut(s)	11, 307, 336, 577, 623
HapII	CCGG	2 cut(s)	337, 578
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	8 cut(s)	40, 146, 174, 359, 365, 382, 832, 863
HincII	GTYRAC	1 cut(s)	509
HindII	GTYRAC	1 cut(s)	509
HinfI	GANTC	7 cut(s)	48, 126, 134, 150, 213, 324, 701
HpaII	CCGG	2 cut(s)	337, 578
Hpy166II	GTNNAC	3 cut(s)	230, 391, 509
Hpy188I	TCNGA	3 cut(s)	88, 139, 562
Hpy188III	TCNNGA	3 cut(s)	237, 429, 660
Hpy8I	GTNNAC	3 cut(s)	230, 391, 509
Hpy99I	CGWCG	2 cut(s)	179, 306
HpyAV	CCTTC	3 cut(s)	203, 535, 740
HpyCH4III	ACNGT	2 cut(s)	462, 739
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	55, 796, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 818
HpyF3I	CTNAG	2 cut(s)	132, 529
HpySE526I	ACGT	1 cut(s)	301
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	8 cut(s)	40, 146, 174, 359, 365, 382, 832, 863
Kzo9I	GATC	3 cut(s)	367, 407, 633
Lsp1109I	GCAGC	1 cut(s)	808
LweI	GCATC	2 cut(s)	740, 858
MaeI	CTAG	1 cut(s)	190
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	248, 786
MalI	GATC	3 cut(s)	369, 409, 635
MboI	GATC	3 cut(s)	367, 407, 633
MboII	GAAGA	9 cut(s)	101, 116, 119, 218, 309, 362, 462, 608, 611
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	1 cut(s)	602
MlyI	GAGTC	5 cut(s)	42, 120, 143, 207, 318
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	4 cut(s)	36, 326, 667, 770
Mph1103I	ATGCAT	1 cut(s)	851
MseI	TTAA	3 cut(s)	520, 697, 741
MslI	CAYNNNNRTG	2 cut(s)	201, 360
MspI	CCGG	2 cut(s)	337, 578
MspR9I	CCNGG	4 cut(s)	573, 579, 609, 814
MvaI	CCWGG	3 cut(s)	573, 609, 814
MwoI	GCNNNNNNNGC	2 cut(s)	17, 818
NciI	CCSGG	1 cut(s)	579
NdeII	GATC	3 cut(s)	367, 407, 633
NlaIII	CATG	8 cut(s)	40, 146, 174, 359, 365, 382, 832, 863
NlaIV	GGNNCC	4 cut(s)	181, 393, 655, 834
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	851
NspI	RCATGY	3 cut(s)	146, 174, 365
OliI	CACNNNNGTG	1 cut(s)	201
PciI	ACATGT	2 cut(s)	142, 361
PfeI	GAWTC	2 cut(s)	150, 701
PflMI	CCANNNNNTGG	1 cut(s)	666
PkrI	GCNGC	3 cut(s)	625, 774, 798
PleI	GAGTC	5 cut(s)	42, 120, 142, 207, 318
PpsI	GAGTC	5 cut(s)	42, 120, 142, 207, 318
PscI	ACATGT	2 cut(s)	142, 361
Psp6I	CCWGG	3 cut(s)	571, 607, 812
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	3 cut(s)	571, 607, 812
PspN4I	GGNNCC	4 cut(s)	181, 393, 655, 834
PspPI	GGNCC	4 cut(s)	391, 458, 575, 621
PstNI	CAGNNNCTG	2 cut(s)	666, 802
RsaI	GTAC	4 cut(s)	3, 33, 447, 692
RsaNI	GTAC	4 cut(s)	2, 32, 446, 691
RseI	CAYNNNNRTG	2 cut(s)	201, 360
SaqAI	TTAA	3 cut(s)	520, 697, 741
SatI	GCNGC	3 cut(s)	624, 773, 797
Sau3AI	GATC	3 cut(s)	367, 407, 633
Sau96I	GGNCC	4 cut(s)	391, 458, 575, 621
ScaI	AGTACT	1 cut(s)	692
SchI	GAGTC	5 cut(s)	42, 120, 143, 207, 318
ScrFI	CCNGG	4 cut(s)	573, 579, 609, 814
SduI	GDGCHC	1 cut(s)	656
SetI	ASST	8 cut(s)	61, 69, 255, 304, 322, 659, 668, 788
SfaNI	GCATC	2 cut(s)	740, 858
SinI	GGWCC	2 cut(s)	391, 458
SmiMI	CAYNNNNRTG	2 cut(s)	201, 360
SmlI	CTYRAG	2 cut(s)	27, 477
SmoI	CTYRAG	2 cut(s)	27, 477
Sse9I	AATT	1 cut(s)	602
SsiI	CCGC	3 cut(s)	266, 624, 772
SspMI	CTAG	1 cut(s)	190
StyD4I	CCNGG	4 cut(s)	571, 577, 607, 812
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	462, 739
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	4 cut(s)	216, 331, 636, 718
TasI	AATT	1 cut(s)	602
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	2 cut(s)	626, 775
TfiI	GAWTC	2 cut(s)	150, 701
Tru1I	TTAA	3 cut(s)	520, 697, 741
Tru9I	TTAA	3 cut(s)	520, 697, 741
TscAI	CASTG	2 cut(s)	136, 807
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	796
Tsp45I	GTSAC	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	136, 807
Van91I	CCANNNNNTGG	1 cut(s)	666
VpaK11BI	GGWCC	2 cut(s)	391, 458
XceI	RCATGY	3 cut(s)	146, 174, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	615
XspI	CTAG	1 cut(s)	190
ZraI	GACGTC	1 cut(s)	302
ZrmI	AGTACT	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.