MD05G1303400.v1.1

Protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
43593091 .. 43597070
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1303400.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGGTTTCAAGCTCCAAGCTCTGCTGTGCCTTGTAGCTCTTCAAGTTCTGGTCTTCTTCTCAGAGGAAGCAGAAGCAGCAGAACACAGCCATGGCATCAGCTTGAGAGTCCACAGGAAGCAAGTGAGCGGCTGCAATTTGTTCCAAGGCAATTGGGTTTTTGATGCTTCTTACCCGCTCTATGATTCCGCCAGCTGTCCCTTCATAGATCCTGAGTTTGATTGCATCAAGTATGGCAGACCTGACAAGCAGTTCCTCAAGTATGCCTGGAAGCCTGACTCCTGTAACTTGCCCAGGTTTGATGGGGTGGATTTTCTGAGGAGGTGGAGGGGAAAAAAGATAATGTTCGTGGGCGACTCACTGAGTCTAAACATGTGGGAATCATTGTCTTGTATGATACATGCGTCGGTGCCAAATGCCAAGACCACCTTCAAAAAAGCCTATTCTGTGAGCTTTGAGGACTATGGAGTGACTTTGTTTATGTTCCGGACACCATACCTTGTAGATATAGTCAGAGAAAAGGTTGGCCGTGTGCTAAACCTAAACTCCATCAACGCCGGAAATGCATGGAAAGGGATGGACGTCCTGATCTTCAACTCTTGGCATTGGTGGACCCACACCGGCAAGTCTCAGCCATTTGATTATTTTCGTGATGGGACAAAACTGTACAAAGACATGGATCGTTTGACAGCATATTATAAGGGGCTTTCCACATGGGCTAGATGGGTTGACTCAAATGTTGATACTTCAAGAACCAAAGTCTTCTTCCAGGGCATTTCTCCAACACATTATCAGGGAAAAGAATGGAATTCGCCAAAGAAGACTTGCTCAGGAGAACTTGGACCGTTGTCGGGATCAACCTACCCAGCAGGGGCACCTCCATCTGCTGCTGTTGTGTATAAGGTGCTAAGCACGATTAAGAACCCGGTTTACTTGCTCGACATTACAACGCTCTCGCAGTTGAGAAAGGATGCTCATCCCTCAACTTATAGTGGCGATCATTCGGGCAATGACTGCAGCCACTGGTGCCTGCCCGGGTTGCCTGATACCTGGAACCAACTCCTATATGCAGCTCTCATCATGTGA

Protein Analysis

362

Amino Acids

41.03

Weight (kDa)

8.71

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 44 - 96 4.4e-23 PMR5 N terminal Domain
PC-Esterase PF13839 97 - 357 5.4e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AatII GACGTC 1 cut(s) 585
AccB1I GGYRCC 3 cut(s) 409, 874, 1026
AccBSI CCGCTC 2 cut(s) 129, 178
AccIII TCCGGA 1 cut(s) 486
AciI CCGC 3 cut(s) 129, 176, 189
AclWI GGATC 3 cut(s) 203, 687, 862
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 1 cut(s) 808
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 2 cut(s) 851, 871
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 5 cut(s) 10, 44, 433, 595, 750
AjnI CCWGG 4 cut(s) 266, 293, 768, 1049
AjuI GAANNNNNNNTTGG 4 cut(s) 413, 445, 749, 781
AluBI AGCT 7 cut(s) 13, 20, 38, 102, 195, 453, 1073
AluI AGCT 7 cut(s) 13, 20, 38, 102, 195, 453, 1073
Alw26I GTCTC 1 cut(s) 633
AlwI GGATC 3 cut(s) 203, 687, 862
AlwNI CAGNNNCTG 1 cut(s) 1023
Ama87I CYCGRG 1 cut(s) 1034
Aor13HI TCCGGA 1 cut(s) 486
AoxI GGCC 1 cut(s) 526
ApeKI GCWGC 5 cut(s) 77, 132, 887, 1017, 1070
ApoI RAATTY 1 cut(s) 808
AspS9I GGNCC 2 cut(s) 612, 842
AsuC2I CCSGG 3 cut(s) 926, 1035, 1036
AvaI CYCGRG 1 cut(s) 1034
AvaII GGWCC 2 cut(s) 612, 842
BaeGI GKGCMC 1 cut(s) 877
BaeI ACNNNNGTAYC 2 cut(s) 389, 422
BanI GGYRCC 3 cut(s) 409, 874, 1026
BbsI GAAGAC 3 cut(s) 46, 754, 827
BbvI GCAGC 5 cut(s) 89, 119, 874, 1029, 1082
BccI CCATC 6 cut(s) 296, 557, 571, 647, 717, 889
BceAI ACGGC 1 cut(s) 513
BciT130I CCWGG 4 cut(s) 268, 295, 770, 1051
BcnI CCSGG 3 cut(s) 926, 1035, 1036
BcoDI GTCTC 1 cut(s) 633
BfaI CTAG 1 cut(s) 720
BfmI CTRYAG 1 cut(s) 1015
BisI GCNGC 6 cut(s) 78, 130, 133, 888, 1018, 1071
BlpI GCTNAGC 1 cut(s) 908
BlsI GCNGC 6 cut(s) 79, 131, 134, 889, 1019, 1072
Bme1390I CCNGG 7 cut(s) 268, 295, 770, 926, 1035, 1036, 1051
Bme18I GGWCC 2 cut(s) 612, 842
BmeT110I CYCGRG 1 cut(s) 1034
BmgT120I GGNCC 2 cut(s) 612, 842
BmiI GGNNCC 5 cut(s) 411, 614, 876, 1028, 1055
BmrFI CCNGG 7 cut(s) 268, 295, 770, 926, 1035, 1036, 1051
BmsI GCATC 4 cut(s) 105, 154, 234, 961
BoxI GACNNNNGTC 1 cut(s) 847
BpiI GAAGAC 3 cut(s) 46, 754, 827
Bpu10I CCTNAGC 1 cut(s) 829
Bpu1102I GCTNAGC 1 cut(s) 908
BpuEI CTTGAG 2 cut(s) 124, 242
BpuMI CCSGG 3 cut(s) 926, 1035, 1036
BsaBI GATNNNNATC 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 582
BsaJI CCNNGG 5 cut(s) 91, 145, 293, 769, 1034
BsaWI WCCGGW 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 851, 871
Bse118I RCCGGY 1 cut(s) 620
Bse1I ACTGG 1 cut(s) 1028
Bse3DI GCAATG 1 cut(s) 1015
Bse8I GATNNNNATC 1 cut(s) 975
BseAI TCCGGA 1 cut(s) 486
BseBI CCWGG 4 cut(s) 268, 295, 770, 1051
BseDI CCNNGG 5 cut(s) 91, 145, 293, 769, 1034
BseGI GGATG 3 cut(s) 582, 976, 976
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 2 cut(s) 851, 871
BseMI GCAATG 1 cut(s) 1015
BseMII CTCAG 6 cut(s) 75, 204, 308, 353, 644, 843
BseNI ACTGG 1 cut(s) 1028
BseRI GAGGAG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 877
BseXI GCAGC 5 cut(s) 89, 119, 874, 1029, 1082
BseYI CCCAGC 1 cut(s) 865
BshFI GGCC 1 cut(s) 528
BshNI GGYRCC 3 cut(s) 409, 874, 1026
BsiHKCI CYCGRG 1 cut(s) 1034
BsiSI CCGG 5 cut(s) 487, 558, 621, 926, 1035
BslFI GGGAC 2 cut(s) 183, 670
BslI CCNNNNNNNGG 2 cut(s) 851, 871
BsmAI GTCTC 1 cut(s) 633
BsmFI GGGAC 2 cut(s) 183, 670
BsnI GGCC 1 cut(s) 528
BsoBI CYCGRG 1 cut(s) 1034
Bsp1286I GDGCHC 1 cut(s) 877
Bsp13I TCCGGA 1 cut(s) 486
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 5 cut(s) 208, 588, 679, 854, 997
Bsp1720I GCTNAGC 1 cut(s) 908
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 3 cut(s) 129, 176, 189
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 6 cut(s) 74, 205, 309, 354, 643, 842
BspEI TCCGGA 1 cut(s) 486
BspLI GGNNCC 5 cut(s) 411, 614, 876, 1028, 1055
BspMAI CTGCAG 1 cut(s) 1019
BspPI GGATC 3 cut(s) 203, 687, 862
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 3 cut(s) 409, 874, 1026
BsrBI CCGCTC 2 cut(s) 129, 178
BsrDI GCAATG 1 cut(s) 1015
BsrFI RCCGGY 1 cut(s) 620
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 1028
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 5 cut(s) 91, 145, 293, 769, 1034
BssMI GATC 5 cut(s) 208, 588, 679, 854, 997
BssNI GRCGYC 1 cut(s) 582
BssT1I CCWWGG 2 cut(s) 91, 145
Bst2UI CCWGG 4 cut(s) 268, 295, 770, 1051
Bst4CI ACNGT 2 cut(s) 666, 846
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 582
BstAPI GCANNNNNTGC 1 cut(s) 1014
BstAUI TGTACA 1 cut(s) 666
BstC8I GCNNGC 2 cut(s) 193, 1031
BstDEI CTNAG 7 cut(s) 61, 213, 317, 362, 630, 829, 908
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 3 cut(s) 582, 976, 976
BstKTI GATC 5 cut(s) 211, 591, 682, 857, 1000
BstMAI GTCTC 1 cut(s) 633
BstMBI GATC 5 cut(s) 208, 588, 679, 854, 997
BstMWI GCNNNNNNNGC 5 cut(s) 77, 563, 1014, 1026, 1039
BstNI CCWGG 4 cut(s) 268, 295, 770, 1051
BstNSI RCATGY 2 cut(s) 376, 404
BstPAI GACNNNNGTC 1 cut(s) 847
BstSCI CCNGG 7 cut(s) 266, 293, 768, 924, 1033, 1034, 1049
BstSFI CTRYAG 1 cut(s) 1015
BstSLI GKGCMC 1 cut(s) 877
BstV1I GCAGC 5 cut(s) 89, 119, 874, 1029, 1082
BstV2I GAAGAC 3 cut(s) 46, 754, 827
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 1 cut(s) 528
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 3 cut(s) 582, 976, 976
BtsIMutI CAGTG 2 cut(s) 359, 1021
Cac8I GCNNGC 2 cut(s) 193, 1031
CaiI CAGNNNCTG 1 cut(s) 1023
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 2 cut(s) 612, 842
Cfr9I CCCGGG 1 cut(s) 1034
CseI GACGC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 667
CviAII CATG 7 cut(s) 92, 373, 401, 567, 676, 714, 1081
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 7 cut(s) 61, 213, 317, 362, 630, 829, 908
DpnI GATC 5 cut(s) 210, 590, 681, 856, 999
DpnII GATC 5 cut(s) 208, 588, 679, 854, 997
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 91, 145
Eco47I GGWCC 2 cut(s) 612, 842
Eco88I CYCGRG 1 cut(s) 1034
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 4 cut(s) 266, 293, 768, 1049
EcoT14I CCWWGG 2 cut(s) 91, 145
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 91, 145
FaeI CATG 7 cut(s) 95, 376, 404, 570, 679, 717, 1084
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FaqI GGGAC 2 cut(s) 183, 670
FatI CATG 7 cut(s) 91, 372, 400, 566, 675, 713, 1080
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 6 cut(s) 78, 130, 133, 888, 1018, 1071
FokI GGATG 3 cut(s) 589, 963, 983
Fsp4HI GCNGC 6 cut(s) 78, 130, 133, 888, 1018, 1071
FspBI CTAG 1 cut(s) 720
GluI GCNGC 6 cut(s) 78, 130, 133, 888, 1018, 1071
GsaI CCCAGC 1 cut(s) 869
HaeIII GGCC 1 cut(s) 528
HapII CCGG 5 cut(s) 487, 558, 621, 926, 1035
HgaI GACGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 7 cut(s) 95, 376, 404, 570, 679, 717, 1084
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 7 cut(s) 108, 185, 278, 356, 364, 380, 731
HpaII CCGG 5 cut(s) 487, 558, 621, 926, 1035
Hpy166II GTNNAC 4 cut(s) 112, 612, 730, 931
Hpy188I TCNGA 3 cut(s) 64, 318, 515
Hpy188III TCNNGA 7 cut(s) 212, 487, 586, 650, 750, 831, 852
Hpy8I GTNNAC 4 cut(s) 112, 612, 730, 931
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 2 cut(s) 211, 439
HpyCH4III ACNGT 2 cut(s) 666, 846
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 5 cut(s) 135, 225, 566, 1017, 1070
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 563, 1014, 1026, 1039
HpyF3I CTNAG 7 cut(s) 61, 213, 317, 362, 630, 829, 908
HpySE526I ACGT 1 cut(s) 582
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 7 cut(s) 95, 376, 404, 570, 679, 717, 1084
Kpn2I TCCGGA 1 cut(s) 486
Kzo9I GATC 5 cut(s) 208, 588, 679, 854, 997
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 5 cut(s) 89, 119, 874, 1029, 1082
LweI GCATC 4 cut(s) 105, 154, 234, 961
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 284, 469
MalI GATC 5 cut(s) 210, 590, 681, 856, 999
MbiI CCGCTC 2 cut(s) 129, 178
MboI GATC 5 cut(s) 208, 588, 679, 854, 997
MboII GAAGA 7 cut(s) 32, 46, 49, 583, 754, 757, 832
MfeI CAATTG 1 cut(s) 151
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 877
MluCI AATT 3 cut(s) 136, 151, 808
MlyI GAGTC 5 cut(s) 117, 272, 350, 373, 725
MmeI TCCRAC 1 cut(s) 806
MnlI CCTC 8 cut(s) 58, 266, 312, 315, 321, 451, 888, 991
Mph1103I ATGCAT 1 cut(s) 568
MroI TCCGGA 1 cut(s) 486
MseI TTAA 1 cut(s) 918
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 5 cut(s) 487, 558, 621, 926, 1035
MspR9I CCNGG 7 cut(s) 268, 295, 770, 926, 1035, 1036, 1051
MunI CAATTG 1 cut(s) 151
MvaI CCWGG 4 cut(s) 268, 295, 770, 1051
MwoI GCNNNNNNNGC 5 cut(s) 77, 563, 1014, 1026, 1039
NciI CCSGG 3 cut(s) 926, 1035, 1036
NcoI CCATGG 1 cut(s) 91
NdeII GATC 5 cut(s) 208, 588, 679, 854, 997
NlaIII CATG 7 cut(s) 95, 376, 404, 570, 679, 717, 1084
NlaIV GGNNCC 5 cut(s) 411, 614, 876, 1028, 1055
NmuCI GTSAC 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 2 cut(s) 376, 404
PciI ACATGT 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 185, 380
PkrI GCNGC 6 cut(s) 79, 131, 134, 889, 1019, 1072
PleI GAGTC 5 cut(s) 116, 272, 350, 372, 725
PpsI GAGTC 5 cut(s) 116, 272, 350, 372, 725
PscI ACATGT 1 cut(s) 372
PshAI GACNNNNGTC 1 cut(s) 847
PsiI TTATAA 1 cut(s) 699
Psp6I CCWGG 4 cut(s) 266, 293, 768, 1049
PspFI CCCAGC 1 cut(s) 865
PspGI CCWGG 4 cut(s) 266, 293, 768, 1049
PspN4I GGNNCC 5 cut(s) 411, 614, 876, 1028, 1055
PspPI GGNCC 2 cut(s) 612, 842
PsrI GAACNNNNNNTAC 2 cut(s) 914, 946
PstI CTGCAG 1 cut(s) 1019
PstNI CAGNNNCTG 1 cut(s) 1023
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 918
SatI GCNGC 6 cut(s) 78, 130, 133, 888, 1018, 1071
Sau3AI GATC 5 cut(s) 208, 588, 679, 854, 997
Sau96I GGNCC 2 cut(s) 612, 842
SchI GAGTC 5 cut(s) 117, 272, 350, 373, 725
ScrFI CCNGG 7 cut(s) 268, 295, 770, 926, 1035, 1036, 1051
SduI GDGCHC 1 cut(s) 877
SfaNI GCATC 4 cut(s) 105, 154, 234, 961
SfcI CTRYAG 1 cut(s) 1015
SinI GGWCC 2 cut(s) 612, 842
SmaI CCCGGG 1 cut(s) 1036
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 2 cut(s) 103, 257
SmoI CTYRAG 2 cut(s) 103, 257
Sse9I AATT 3 cut(s) 136, 151, 808
SsiI CCGC 3 cut(s) 129, 176, 189
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 7 cut(s) 266, 293, 768, 924, 1033, 1034, 1049
StyI CCWWGG 2 cut(s) 91, 145
TaaI ACNGT 2 cut(s) 666, 846
TaiI ACGT 1 cut(s) 585
TaqI TCGA 1 cut(s) 939
TasI AATT 3 cut(s) 136, 151, 808
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 2 cut(s) 185, 380
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 2 cut(s) 366, 1028
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 5 cut(s) 77, 132, 887, 1017, 1070
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 1 cut(s) 193
TspMI CCCGGG 1 cut(s) 1034
TspRI CASTG 2 cut(s) 366, 1028
VpaK11BI GGWCC 2 cut(s) 612, 842
XapI RAATTY 1 cut(s) 808
XceI RCATGY 2 cut(s) 376, 404
XmaI CCCGGG 1 cut(s) 1034
XspI CTAG 1 cut(s) 720
ZraI GACGTC 1 cut(s) 583
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.