Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Forward (+)

4706470 .. 4709883

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGTTTTAGGCTCCAAGTTCTGCTCCTCACATTTCTTCAAGCTCTGGCCTTGTTTTCACAGGAAGCAACATCAGCTGGCCACCATGGAAGCAGTGTAGGACACCATGGAAGGGTATTGAAACGTGGAAGAAAGCAAGTGACCAGCTGCAATCTGTTCCAAGGCAATTGGGTGTTCGACCCTTCTTGGAATCCCATGTACGACTCCTCGAGCTGTCATTTCATTGATGCCGAGTTCGACTGCATAAAGTACGGACGGCCGGACAAGCAGTTCCTCAAGTATGCATGGAAACCCGACTCTTGTAACTTGCCAAGGTTTGATGGGGCAGATTTTCTGAATAGATGGAGGGGGAAGAAGATAATGTTCGTGGGGGACTCGCTGAGTCTGAACATGTGGGAATCGTTGTCGTGTATGATACATGCGTCGGTGCCAAGTGCCAAGAACACTTTCGTGAAGAAGGACCCGATATCAACTGTGAATTTTCAGGACTATGGAGTGACCTTGTATCTATTCCGCACGCCGTATCTTGTAGATATAGTTCGGGAAGACGCCGGCCGTGTGTTGAAGCTCGACTCCATTGAGGCCGGAAAGTATTGGAAAGACATGGACATGCTGATCTTCAACTCATGGCATTGGTGGACTCATAAAGGAAACGATCGGCCATTTGATTATTTTCAGGATGGGACAAACTTGTACAAAGACATGGACCGTTTGACAGCATATTACAAGGGGCTTTCGACTTGGGGAAAATGGGTTGACACAAATGTTGATCCTTCTAAGACCAAAGTTTTCTTTCAGGGGATTTCTCCTACCCATTACCAGGGCCGGGAATGGAATTCCCCAAAGAAGAATTGCCAGGGTGAACTTGAGCCACTAACTGGATCAACATACCCAGCAGGGGCACCTCCAGAAGCTGGTGTTGTAAGTAAGGTGTTAAATACTGTTAAGAATCCAGTTTATTTGCTCGACATTACAACACTCTCACAGTTGCGGAAGGATGCTCATCCGTCAACATATAGCGGCGACCATTCAGGCAACGATTGCAGCCACTGGTGTCTGCCTGGGTTGCCTGATACATGGAACCAACTCTTATATGCAGCACTCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

371

Amino Acids

42.23

Weight (kDa)

8.29

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	49 - 102	4.5e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	103 - 366	1.2e-95	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	427, 901
AccB7I	CCANNNNNTGG	2 cut(s)	878, 914
AciI	CCGC	3 cut(s)	514, 991, 1020
AclWI	GGATC	2 cut(s)	764, 889
AcoI	YGGCCR	4 cut(s)	79, 257, 553, 659
AcsI	RAATTY	2 cut(s)	478, 835
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	3 cut(s)	200, 251, 695
AfiI	CCNNNNNNNGG	6 cut(s)	112, 820, 826, 878, 898, 914
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	41, 121, 565, 622
AjnI	CCWGG	3 cut(s)	819, 855, 1060
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AleI	CACNNNNGTG	1 cut(s)	449
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	6 cut(s)	44, 77, 147, 213, 568, 914
AluI	AGCT	6 cut(s)	44, 77, 147, 213, 568, 914
AlwI	GGATC	2 cut(s)	764, 889
AlwNI	CAGNNNCTG	2 cut(s)	914, 1050
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	7 cut(s)	48, 79, 257, 553, 582, 659, 823
ApeKI	GCWGC	3 cut(s)	147, 1044, 1097
ApoI	RAATTY	2 cut(s)	478, 835
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	3 cut(s)	460, 706, 823
AsuC2I	CCSGG	1 cut(s)	827
AsuHPI	GGTGA	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	460, 706
BaeGI	GKGCMC	1 cut(s)	904
BaeI	ACNNNNGTAYC	2 cut(s)	407, 440
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	2 cut(s)	427, 901
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	134, 1056, 1109
BccI	CCATC	3 cut(s)	314, 336, 674
BceAI	ACGGC	3 cut(s)	272, 505, 540
BciT130I	CCWGG	3 cut(s)	821, 857, 1062
BcnI	CCSGG	1 cut(s)	827
BisI	GCNGC	4 cut(s)	148, 1021, 1045, 1098
BlsI	GCNGC	4 cut(s)	149, 1022, 1046, 1099
Bme1390I	CCNGG	4 cut(s)	821, 827, 857, 1062
Bme18I	GGWCC	2 cut(s)	460, 706
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	460, 706, 823
BmiI	GGNNCC	5 cut(s)	14, 429, 462, 903, 1082
BmrFI	CCNGG	4 cut(s)	821, 827, 857, 1062
BmsI	GCATC	2 cut(s)	217, 988
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	891
BpuEI	CTTGAG	2 cut(s)	260, 887
BpuMI	CCSGG	1 cut(s)	827
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaHI	GRCGYC	1 cut(s)	549
BsaJI	CCNNGG	7 cut(s)	85, 106, 160, 311, 820, 856, 1061
Bsc4I	CCNNNNNNNGG	6 cut(s)	112, 820, 826, 878, 898, 914
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	3 cut(s)	883, 953, 1055
Bse8I	GATNNNNATC	1 cut(s)	1002
BseBI	CCWGG	3 cut(s)	821, 857, 1062
BseDI	CCNNGG	7 cut(s)	85, 106, 160, 311, 820, 856, 1061
BseGI	GGATG	3 cut(s)	685, 1003, 1003
BseJI	GATNNNNATC	1 cut(s)	1002
BseLI	CCNNNNNNNGG	6 cut(s)	112, 820, 826, 878, 898, 914
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	3 cut(s)	883, 953, 1055
BseRI	GAGGAG	2 cut(s)	17, 196
BseSI	GKGCMC	1 cut(s)	904
BseX3I	CGGCCG	2 cut(s)	257, 553
BseXI	GCAGC	3 cut(s)	134, 1056, 1109
BseYI	CCCAGC	1 cut(s)	892
Bsh1285I	CGRYCG	3 cut(s)	260, 556, 658
BshFI	GGCC	7 cut(s)	50, 81, 259, 555, 584, 661, 825
BshNI	GGYRCC	2 cut(s)	427, 901
BsiEI	CGRYCG	3 cut(s)	260, 556, 658
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	260, 552, 585, 826
BslFI	GGGAC	2 cut(s)	386, 697
BslI	CCNNNNNNNGG	6 cut(s)	112, 820, 826, 878, 898, 914
BsmFI	GGGAC	2 cut(s)	386, 697
BsnI	GGCC	7 cut(s)	50, 81, 259, 555, 584, 661, 825
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	904
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	4 cut(s)	615, 655, 769, 881
Bsp19I	CCATGG	2 cut(s)	85, 106
BspACI	CCGC	3 cut(s)	514, 991, 1020
BspANI	GGCC	7 cut(s)	50, 81, 259, 555, 584, 661, 825
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	5 cut(s)	14, 429, 462, 903, 1082
BspPI	GGATC	2 cut(s)	764, 889
BspT107I	GGYRCC	2 cut(s)	427, 901
BsrFI	RCCGGY	1 cut(s)	551
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	3 cut(s)	883, 953, 1055
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	7 cut(s)	85, 106, 160, 311, 820, 856, 1061
BssMI	GATC	4 cut(s)	615, 655, 769, 881
BssNI	GRCGYC	1 cut(s)	549
BssT1I	CCWWGG	4 cut(s)	85, 106, 160, 311
Bst2UI	CCWGG	3 cut(s)	821, 857, 1062
Bst4CI	ACNGT	4 cut(s)	475, 710, 943, 987
BstACI	GRCGYC	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	1041
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	3 cut(s)	79, 518, 553
BstDEI	CTNAG	2 cut(s)	380, 777
BstDSI	CCRYGG	2 cut(s)	85, 106
BstF5I	GGATG	3 cut(s)	685, 1003, 1003
BstKTI	GATC	4 cut(s)	618, 658, 772, 884
BstMBI	GATC	4 cut(s)	615, 655, 769, 881
BstMCI	CGRYCG	3 cut(s)	260, 556, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 265, 1041, 1066
BstNI	CCWGG	3 cut(s)	821, 857, 1062
BstNSI	RCATGY	3 cut(s)	394, 422, 613
BstSCI	CCNGG	4 cut(s)	819, 825, 855, 1060
BstSLI	GKGCMC	1 cut(s)	904
BstV1I	GCAGC	3 cut(s)	134, 1056, 1109
BstV2I	GAAGAC	1 cut(s)	552
BstZI	CGGCCG	2 cut(s)	257, 553
BsuRI	GGCC	7 cut(s)	50, 81, 259, 555, 584, 661, 825
BtgI	CCRYGG	2 cut(s)	85, 106
BtsCI	GGATG	3 cut(s)	685, 1003, 1003
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	100, 1048
Cac8I	GCNNGC	3 cut(s)	79, 518, 553
CaiI	CAGNNNCTG	2 cut(s)	914, 1050
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	3 cut(s)	460, 706, 823
CseI	GACGC	2 cut(s)	411, 557
Csp6I	GTAC	3 cut(s)	199, 250, 694
CviQI	GTAC	3 cut(s)	199, 250, 694
DdeI	CTNAG	2 cut(s)	380, 777
DpnI	GATC	4 cut(s)	617, 657, 771, 883
DpnII	GATC	4 cut(s)	615, 655, 769, 881
EaeI	YGGCCR	4 cut(s)	79, 257, 553, 659
EagI	CGGCCG	2 cut(s)	257, 553
EclXI	CGGCCG	2 cut(s)	257, 553
Eco130I	CCWWGG	4 cut(s)	85, 106, 160, 311
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	460, 706
Eco52I	CGGCCG	2 cut(s)	257, 553
Eco88I	CYCGRG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRI	GAATTC	1 cut(s)	835
EcoRII	CCWGG	3 cut(s)	819, 855, 1060
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	4 cut(s)	85, 106, 160, 311
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	4 cut(s)	85, 106, 160, 311
FaqI	GGGAC	2 cut(s)	386, 697
Fnu4HI	GCNGC	4 cut(s)	148, 1021, 1045, 1098
FokI	GGATG	3 cut(s)	692, 990, 1010
Fsp4HI	GCNGC	4 cut(s)	148, 1021, 1045, 1098
GluI	GCNGC	4 cut(s)	148, 1021, 1045, 1098
GsaI	CCCAGC	1 cut(s)	896
GsuI	CTGGAG	1 cut(s)	891
HaeIII	GGCC	7 cut(s)	50, 81, 259, 555, 584, 661, 825
HapII	CCGG	4 cut(s)	260, 552, 585, 826
HgaI	GACGC	2 cut(s)	411, 557
Hin1I	GRCGYC	1 cut(s)	549
HincII	GTYRAC	2 cut(s)	757, 1011
HindII	GTYRAC	2 cut(s)	757, 1011
HinfI	GANTC	9 cut(s)	190, 203, 296, 374, 382, 398, 572, 640, 949
HpaII	CCGG	4 cut(s)	260, 552, 585, 826
HphI	GGTGA	1 cut(s)	872
Hpy166II	GTNNAC	4 cut(s)	639, 757, 863, 1011
Hpy188I	TCNGA	2 cut(s)	336, 387
Hpy188III	TCNNGA	5 cut(s)	451, 485, 542, 677, 908
Hpy8I	GTNNAC	4 cut(s)	639, 757, 863, 1011
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	5 cut(s)	105, 192, 451, 783, 988
HpyCH4III	ACNGT	4 cut(s)	475, 710, 943, 987
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	5 cut(s)	150, 243, 284, 1044, 1097
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 265, 1041, 1066
HpyF3I	CTNAG	2 cut(s)	380, 777
HpySE526I	ACGT	1 cut(s)	124
Hsp92I	GRCGYC	1 cut(s)	549
KroI	GCCGGC	1 cut(s)	551
KroNI	GCCGGC	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	615, 655, 769, 881
LmnI	GCTCC	2 cut(s)	18, 30
Lsp1109I	GCAGC	3 cut(s)	134, 1056, 1109
LweI	GCATC	2 cut(s)	217, 988
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	139, 302, 496
MalI	GATC	4 cut(s)	617, 657, 771, 883
MboI	GATC	4 cut(s)	615, 655, 769, 881
MboII	GAAGA	8 cut(s)	29, 141, 364, 367, 466, 557, 610, 859
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	904
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	4 cut(s)	166, 478, 835, 850
MluNI	TGGCCA	1 cut(s)	81
MlyI	GAGTC	6 cut(s)	197, 290, 368, 391, 566, 634
MnlI	CCTC	6 cut(s)	38, 217, 284, 339, 574, 915
Mox20I	TGGCCA	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	2 cut(s)	935, 945
MslI	CAYNNNNRTG	2 cut(s)	449, 608
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	77, 147
MspI	CCGG	4 cut(s)	260, 552, 585, 826
MspR9I	CCNGG	4 cut(s)	821, 827, 857, 1062
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	3 cut(s)	821, 857, 1062
MwoI	GCNNNNNNNGC	4 cut(s)	74, 265, 1041, 1066
NaeI	GCCGGC	1 cut(s)	553
NciI	CCSGG	1 cut(s)	827
NcoI	CCATGG	2 cut(s)	85, 106
NdeII	GATC	4 cut(s)	615, 655, 769, 881
NgoMIV	GCCGGC	1 cut(s)	551
NlaIV	GGNNCC	5 cut(s)	14, 429, 462, 903, 1082
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	139, 496
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	3 cut(s)	394, 422, 613
OliI	CACNNNNGTG	1 cut(s)	449
PaeR7I	CTCGAG	1 cut(s)	208
PciI	ACATGT	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	190, 398, 949
PflMI	CCANNNNNTGG	2 cut(s)	878, 914
PkrI	GCNGC	4 cut(s)	149, 1022, 1046, 1099
Ple19I	CGATCG	1 cut(s)	658
PleI	GAGTC	6 cut(s)	197, 290, 368, 390, 566, 634
PpsI	GAGTC	6 cut(s)	197, 290, 368, 390, 566, 634
PpuMI	RGGWCCY	1 cut(s)	460
PscI	ACATGT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	460
Psp6I	CCWGG	3 cut(s)	819, 855, 1060
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	3 cut(s)	819, 855, 1060
PspN4I	GGNNCC	5 cut(s)	14, 429, 462, 903, 1082
PspPI	GGNCC	3 cut(s)	460, 706, 823
PspPPI	RGGWCCY	1 cut(s)	460
PspXI	VCTCGAGB	1 cut(s)	208
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PstNI	CAGNNNCTG	2 cut(s)	914, 1050
PvuI	CGATCG	1 cut(s)	658
PvuII	CAGCTG	2 cut(s)	77, 147
RsaI	GTAC	3 cut(s)	200, 251, 695
RsaNI	GTAC	3 cut(s)	199, 250, 694
RseI	CAYNNNNRTG	2 cut(s)	449, 608
SaqAI	TTAA	2 cut(s)	935, 945
SatI	GCNGC	4 cut(s)	148, 1021, 1045, 1098
Sau3AI	GATC	4 cut(s)	615, 655, 769, 881
Sau96I	GGNCC	3 cut(s)	460, 706, 823
SchI	GAGTC	6 cut(s)	197, 290, 368, 391, 566, 634
ScrFI	CCNGG	4 cut(s)	821, 827, 857, 1062
SduI	GDGCHC	1 cut(s)	904
SfaNI	GCATC	2 cut(s)	217, 988
Sfr274I	CTCGAG	1 cut(s)	208
SinI	GGWCC	2 cut(s)	460, 706
SlaI	CTCGAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	449, 608
SmlI	CTYRAG	3 cut(s)	208, 275, 866
SmoI	CTYRAG	3 cut(s)	208, 275, 866
Sse9I	AATT	4 cut(s)	166, 478, 835, 850
SsiI	CCGC	3 cut(s)	514, 991, 1020
StyD4I	CCNGG	4 cut(s)	819, 825, 855, 1060
StyI	CCWWGG	4 cut(s)	85, 106, 160, 311
TaaI	ACNGT	4 cut(s)	475, 710, 943, 987
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	6 cut(s)	177, 209, 237, 570, 737, 966
TasI	AATT	4 cut(s)	166, 478, 835, 850
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	1 cut(s)	1023
TfiI	GAWTC	3 cut(s)	190, 398, 949
Tru1I	TTAA	2 cut(s)	935, 945
Tru9I	TTAA	2 cut(s)	935, 945
TscAI	CASTG	2 cut(s)	100, 1055
TseFI	GTSAC	2 cut(s)	139, 496
TseI	GCWGC	3 cut(s)	147, 1044, 1097
Tsp45I	GTSAC	2 cut(s)	139, 496
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	2 cut(s)	267, 996
TspRI	CASTG	2 cut(s)	100, 1055
Van91I	CCANNNNNTGG	2 cut(s)	878, 914
VpaK11BI	GGWCC	2 cut(s)	460, 706
XapI	RAATTY	2 cut(s)	478, 835
XceI	RCATGY	3 cut(s)	394, 422, 613
XhoI	CTCGAG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.