Rh5BG076300

Protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
6416462 .. 6419677
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG076300.1

Sequence Viewer

Length: 1092 bp
ATGGGTTTTAGGCTCCAAGCTCTGTTCCTCACATTTCTTCAAGCTCTGGTCTTGTTTTCACAGGAAGCAGTGTCAGCTGGCCACCATGGCAGCCCTTTGAAACGTGGAAAAAAGCAAGTGACCAGCTGCAATTTGTTCCAAGGCAATTGGGTGTTCGACCCTTCTTGGAATCCCCTATACGATTCCTCGAGCTGTCCCTTCATTGATGCCGAGTTTGATTGCATAAAGTACGGAAGGCCGGACAAGCAGTTCCTCAAGTACGCATGGAAACCCGACTCTTGCAACCTGCCAAGGTTTGATGGGAGTGATTTTCTGAAGAGATGGAGTGGGAAGAAGATAATGTTCGTGGGGGACTCACTGAGTCTGAACATGTGGGAATCGTTGTCGTGTATGATACATGCGTCGGTGCCAAATGCCAAGAACACTTTTGTGAAGAAGGACCCGATATCATCTGTGAACTTTCAGGATTATGGAGTGACCTTGTTTCTATTCCGCACGCCGTATCTCGTAGATATAGTTAGAGAAGACGTCGGCCGTGTGTTGAAGCTGGACTCTATCGAGGCCGGAAAGTATTGGAAAGACATGGACATGTTGGTCTTCAACTCATGGCATTGGTGGACCCATAAGGGAAAAGATCGGCCATTTGATTATTTTCAGGACGGGACAAACTTGTACAAAGATATGGACCGTTTGACAGCATATCTCAAGGGGCTTTCCACTTGGGCAAAATGGGTCGACACAAATGTTAATCCTTCTAAGACCAAAGTTTTCTTTCAGGGGATTTCTCCGACCCATTACCAGGGCCAGGAATGGAACTCCCCGAAGAAGAATTGCCAGGGAGAACTTGGGCCGCTAACTGGATCGACATACCCAGCAGGGGCACCTCCAGAAGCTGGTGTTTTAAGTAGAGTGTTGAGTACTATTAAGAACCCAGTTTATTTGCTCGACATTACGACACTCTCACAGTTAAGGAAGGATGCTCATCCCTCAACATATAGCGGTGACCATTCAGGTAACGATTGCAGCCACTGGTGTCTGCCTGGGTTGCCTGATACATGGAACCAACTCTTATATGCATCACTCATCATGTGA

Protein Analysis

363

Amino Acids

41.34

Weight (kDa)

8.48

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 42 - 95 4.7e-22 PMR5 N terminal Domain
PC-Esterase PF13839 96 - 359 6.6e-94 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
AatII GACGTC 1 cut(s) 531
Acc36I ACCTGC 1 cut(s) 294
AccB1I GGYRCC 2 cut(s) 406, 880
AccB7I CCANNNNNTGG 1 cut(s) 893
AccI GTMKAC 1 cut(s) 735
AciI CCGC 3 cut(s) 493, 851, 999
AclWI GGATC 1 cut(s) 868
AcoI YGGCCR 3 cut(s) 79, 532, 638
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 4 cut(s) 230, 260, 674, 919
AfiI CCNNNNNNNGG 5 cut(s) 799, 805, 857, 877, 893
AflIII ACRYGT 2 cut(s) 369, 588
AgsI TTSAA 4 cut(s) 41, 100, 544, 601
AjnI CCWGG 4 cut(s) 798, 804, 834, 1039
AleI CACNNNNGTG 1 cut(s) 428
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 7 cut(s) 20, 44, 77, 126, 192, 547, 893
AluI AGCT 7 cut(s) 20, 44, 77, 126, 192, 547, 893
AlwI GGATC 1 cut(s) 868
AlwNI CAGNNNCTG 2 cut(s) 893, 1029
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 7 cut(s) 79, 236, 532, 561, 638, 802, 848
ApeKI GCWGC 3 cut(s) 90, 126, 1023
AspS9I GGNCC 5 cut(s) 439, 618, 685, 802, 848
AsuHPI GGTGA 1 cut(s) 1013
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 3 cut(s) 439, 618, 685
BaeGI GKGCMC 1 cut(s) 883
BaeI ACNNNNGTAYC 2 cut(s) 386, 419
BalI TGGCCA 1 cut(s) 81
BanI GGYRCC 2 cut(s) 406, 880
BbsI GAAGAC 2 cut(s) 531, 589
BbvI GCAGC 3 cut(s) 102, 113, 1035
BccI CCATC 2 cut(s) 293, 315
BceAI ACGGC 2 cut(s) 484, 519
BciT130I CCWGG 4 cut(s) 800, 806, 836, 1041
BfuAI ACCTGC 1 cut(s) 294
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 4 cut(s) 91, 127, 851, 1024
BlsI GCNGC 4 cut(s) 92, 128, 852, 1025
BmcAI AGTACT 1 cut(s) 919
Bme1390I CCNGG 4 cut(s) 800, 806, 836, 1041
Bme18I GGWCC 3 cut(s) 439, 618, 685
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 5 cut(s) 439, 618, 685, 802, 848
BmiI GGNNCC 6 cut(s) 14, 408, 441, 620, 882, 1061
BmrFI CCNGG 4 cut(s) 800, 806, 836, 1041
BmrI ACTGGG 1 cut(s) 926
BmsI GCATC 3 cut(s) 196, 967, 1085
BmuI ACTGGG 1 cut(s) 926
BpiI GAAGAC 2 cut(s) 531, 589
BpmI CTGGAG 1 cut(s) 870
BpuEI CTTGAG 2 cut(s) 239, 689
BsaBI GATNNNNATC 1 cut(s) 981
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 6 cut(s) 85, 139, 290, 799, 835, 1040
Bsc4I CCNNNNNNNGG 5 cut(s) 799, 805, 857, 877, 893
Bse1I ACTGG 3 cut(s) 862, 932, 1034
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 4 cut(s) 800, 806, 836, 1041
BseDI CCNNGG 6 cut(s) 85, 139, 290, 799, 835, 1040
BseGI GGATG 2 cut(s) 982, 982
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 5 cut(s) 799, 805, 857, 877, 893
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 3 cut(s) 862, 932, 1034
BseSI GKGCMC 1 cut(s) 883
BseX3I CGGCCG 1 cut(s) 532
BseXI GCAGC 3 cut(s) 102, 113, 1035
BseYI CCCAGC 1 cut(s) 871
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 7 cut(s) 81, 238, 534, 563, 640, 804, 850
BshNI GGYRCC 2 cut(s) 406, 880
BsiEI CGRYCG 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 239, 564
BslFI GGGAC 3 cut(s) 180, 365, 676
BslI CCNNNNNNNGG 5 cut(s) 799, 805, 857, 877, 893
BsmFI GGGAC 3 cut(s) 180, 365, 676
BsnI GGCC 7 cut(s) 81, 238, 534, 563, 640, 804, 850
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 883
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 2 cut(s) 634, 860
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 3 cut(s) 493, 851, 999
BspANI GGCC 7 cut(s) 81, 238, 534, 563, 640, 804, 850
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 6 cut(s) 14, 408, 441, 620, 882, 1061
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 868
BspT107I GGYRCC 2 cut(s) 406, 880
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 3 cut(s) 862, 932, 1034
BssECI CCNNGG 6 cut(s) 85, 139, 290, 799, 835, 1040
BssMI GATC 2 cut(s) 634, 860
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 3 cut(s) 85, 139, 290
Bst2UI CCWGG 4 cut(s) 800, 806, 836, 1041
Bst4CI ACNGT 2 cut(s) 689, 966
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 672
BstC8I GCNNGC 2 cut(s) 79, 497
BstDEI CTNAG 2 cut(s) 359, 756
BstDSI CCRYGG 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 1001
BstF5I GGATG 2 cut(s) 982, 982
BstKTI GATC 2 cut(s) 637, 863
BstMBI GATC 2 cut(s) 634, 860
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 4 cut(s) 74, 87, 244, 1045
BstNI CCWGG 4 cut(s) 800, 806, 836, 1041
BstNSI RCATGY 3 cut(s) 373, 401, 592
BstPI GGTNACC 1 cut(s) 1001
BstSCI CCNGG 4 cut(s) 798, 804, 834, 1039
BstSLI GKGCMC 1 cut(s) 883
BstV1I GCAGC 3 cut(s) 102, 113, 1035
BstV2I GAAGAC 2 cut(s) 531, 589
BstZI CGGCCG 1 cut(s) 532
BsuRI GGCC 7 cut(s) 81, 238, 534, 563, 640, 804, 850
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 982, 982
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 3 cut(s) 75, 356, 1027
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 79, 497
CaiI CAGNNNCTG 2 cut(s) 893, 1029
Cfr13I GGNCC 5 cut(s) 439, 618, 685, 802, 848
CseI GACGC 1 cut(s) 390
Csp6I GTAC 4 cut(s) 229, 259, 673, 918
CviAII CATG 9 cut(s) 86, 264, 370, 398, 583, 589, 606, 1056, 1087
CviQI GTAC 4 cut(s) 229, 259, 673, 918
DdeI CTNAG 2 cut(s) 359, 756
DpnI GATC 2 cut(s) 636, 862
DpnII GATC 2 cut(s) 634, 860
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 3 cut(s) 79, 532, 638
EagI CGGCCG 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EclXI CGGCCG 1 cut(s) 532
Eco130I CCWWGG 3 cut(s) 85, 139, 290
Eco32I GATATC 1 cut(s) 447
Eco47I GGWCC 3 cut(s) 439, 618, 685
Eco52I CGGCCG 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 187
Eco91I GGTNACC 1 cut(s) 1001
EcoO109I RGGNCCY 1 cut(s) 439
EcoO65I GGTNACC 1 cut(s) 1001
EcoRII CCWGG 4 cut(s) 798, 804, 834, 1039
EcoRV GATATC 1 cut(s) 447
EcoT14I CCWWGG 3 cut(s) 85, 139, 290
EcoT22I ATGCAT 1 cut(s) 1078
ErhI CCWWGG 3 cut(s) 85, 139, 290
FaeI CATG 9 cut(s) 89, 267, 373, 401, 586, 592, 609, 1059, 1090
FaqI GGGAC 3 cut(s) 180, 365, 676
FatI CATG 9 cut(s) 85, 263, 369, 397, 582, 588, 605, 1055, 1086
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 4 cut(s) 91, 127, 851, 1024
FokI GGATG 2 cut(s) 969, 989
Fsp4HI GCNGC 4 cut(s) 91, 127, 851, 1024
GluI GCNGC 4 cut(s) 91, 127, 851, 1024
GsaI CCCAGC 1 cut(s) 875
GsuI CTGGAG 1 cut(s) 870
HaeIII GGCC 7 cut(s) 81, 238, 534, 563, 640, 804, 850
HapII CCGG 2 cut(s) 239, 564
HgaI GACGC 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 9 cut(s) 89, 267, 373, 401, 586, 592, 609, 1059, 1090
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HinfI GANTC 7 cut(s) 169, 182, 275, 353, 361, 377, 551
HpaII CCGG 2 cut(s) 239, 564
HphI GGTGA 1 cut(s) 1013
Hpy166II GTNNAC 3 cut(s) 457, 618, 736
Hpy188I TCNGA 3 cut(s) 315, 366, 789
Hpy188III TCNNGA 3 cut(s) 464, 656, 887
Hpy8I GTNNAC 3 cut(s) 457, 618, 736
Hpy99I CGWCG 2 cut(s) 406, 533
HpyAV CCTTC 6 cut(s) 171, 208, 228, 430, 762, 967
HpyCH4III ACNGT 2 cut(s) 689, 966
HpyCH4IV ACGT 2 cut(s) 103, 528
HpyCH4V TGCA 5 cut(s) 129, 222, 282, 1023, 1076
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 87, 244, 1045
HpyF3I CTNAG 2 cut(s) 359, 756
HpySE526I ACGT 2 cut(s) 103, 528
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 9 cut(s) 89, 267, 373, 401, 586, 592, 609, 1059, 1090
Kzo9I GATC 2 cut(s) 634, 860
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 3 cut(s) 102, 113, 1035
LweI GCATC 3 cut(s) 196, 967, 1085
MaeII ACGT 2 cut(s) 103, 528
MaeIII GTNAC 4 cut(s) 118, 475, 1001, 1013
MalI GATC 2 cut(s) 636, 862
MboI GATC 2 cut(s) 634, 860
MboII GAAGA 9 cut(s) 29, 328, 343, 346, 445, 536, 589, 835, 838
MfeI CAATTG 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 883
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 3 cut(s) 130, 145, 829
MluNI TGGCCA 1 cut(s) 81
MlyI GAGTC 4 cut(s) 269, 347, 370, 545
MmeI TCCRAC 1 cut(s) 812
MnlI CCTC 6 cut(s) 38, 196, 263, 553, 894, 997
Mox20I TGGCCA 1 cut(s) 81
Mph1103I ATGCAT 1 cut(s) 1078
MscI TGGCCA 1 cut(s) 81
MseI TTAA 4 cut(s) 747, 902, 924, 968
MslI CAYNNNNRTG 2 cut(s) 428, 587
Msp20I TGGCCA 1 cut(s) 81
MspA1I CMGCKG 2 cut(s) 77, 126
MspI CCGG 2 cut(s) 239, 564
MspR9I CCNGG 4 cut(s) 800, 806, 836, 1041
MunI CAATTG 1 cut(s) 145
MvaI CCWGG 4 cut(s) 800, 806, 836, 1041
MwoI GCNNNNNNNGC 4 cut(s) 74, 87, 244, 1045
NcoI CCATGG 1 cut(s) 85
NdeII GATC 2 cut(s) 634, 860
NlaIII CATG 9 cut(s) 89, 267, 373, 401, 586, 592, 609, 1059, 1090
NlaIV GGNNCC 6 cut(s) 14, 408, 441, 620, 882, 1061
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 3 cut(s) 118, 475, 1001
NsiI ATGCAT 1 cut(s) 1078
NspI RCATGY 3 cut(s) 373, 401, 592
OliI CACNNNNGTG 1 cut(s) 428
PaeR7I CTCGAG 1 cut(s) 187
PciI ACATGT 2 cut(s) 369, 588
PfeI GAWTC 3 cut(s) 169, 182, 377
PflMI CCANNNNNTGG 1 cut(s) 893
PkrI GCNGC 4 cut(s) 92, 128, 852, 1025
PleI GAGTC 4 cut(s) 269, 347, 369, 545
PpsI GAGTC 4 cut(s) 269, 347, 369, 545
PpuMI RGGWCCY 1 cut(s) 439
PscI ACATGT 2 cut(s) 369, 588
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 4 cut(s) 798, 804, 834, 1039
PspEI GGTNACC 1 cut(s) 1001
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 4 cut(s) 798, 804, 834, 1039
PspN4I GGNNCC 6 cut(s) 14, 408, 441, 620, 882, 1061
PspPI GGNCC 5 cut(s) 439, 618, 685, 802, 848
PspPPI RGGWCCY 1 cut(s) 439
PspXI VCTCGAGB 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 893, 1029
PvuII CAGCTG 2 cut(s) 77, 126
RsaI GTAC 4 cut(s) 230, 260, 674, 919
RsaNI GTAC 4 cut(s) 229, 259, 673, 918
RseI CAYNNNNRTG 2 cut(s) 428, 587
SalI GTCGAC 1 cut(s) 734
SaqAI TTAA 4 cut(s) 747, 902, 924, 968
SatI GCNGC 4 cut(s) 91, 127, 851, 1024
Sau3AI GATC 2 cut(s) 634, 860
Sau96I GGNCC 5 cut(s) 439, 618, 685, 802, 848
ScaI AGTACT 1 cut(s) 919
SchI GAGTC 4 cut(s) 269, 347, 370, 545
ScrFI CCNGG 4 cut(s) 800, 806, 836, 1041
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 3 cut(s) 196, 967, 1085
Sfr274I CTCGAG 1 cut(s) 187
SinI GGWCC 3 cut(s) 439, 618, 685
SlaI CTCGAG 1 cut(s) 187
SmiMI CAYNNNNRTG 2 cut(s) 428, 587
SmlI CTYRAG 3 cut(s) 187, 254, 704
SmoI CTYRAG 3 cut(s) 187, 254, 704
Sse9I AATT 3 cut(s) 130, 145, 829
SsiI CCGC 3 cut(s) 493, 851, 999
StyD4I CCNGG 4 cut(s) 798, 804, 834, 1039
StyI CCWWGG 3 cut(s) 85, 139, 290
TaaI ACNGT 2 cut(s) 689, 966
TaiI ACGT 2 cut(s) 106, 531
TaqI TCGA 6 cut(s) 156, 188, 558, 735, 863, 945
TasI AATT 3 cut(s) 130, 145, 829
TatI WGTACW 2 cut(s) 672, 917
TauI GCSGC 1 cut(s) 853
TfiI GAWTC 3 cut(s) 169, 182, 377
Tru1I TTAA 4 cut(s) 747, 902, 924, 968
Tru9I TTAA 4 cut(s) 747, 902, 924, 968
TscAI CASTG 3 cut(s) 75, 363, 1034
TseFI GTSAC 3 cut(s) 118, 475, 1001
TseI GCWGC 3 cut(s) 90, 126, 1023
Tsp45I GTSAC 3 cut(s) 118, 475, 1001
TspDTI ATGAA 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 3 cut(s) 75, 363, 1034
Van91I CCANNNNNTGG 1 cut(s) 893
VpaK11BI GGWCC 3 cut(s) 439, 618, 685
XceI RCATGY 3 cut(s) 373, 401, 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
XhoI CTCGAG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 735
ZraI GACGTC 1 cut(s) 529
ZrmI AGTACT 1 cut(s) 919
Zsp2I ATGCAT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.