Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Reverse (-)

7006912 .. 7009995

Gene Structure 3084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG089600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGTTTTAGGCTCCAAGCTCTGTTCCTCACATTTCTTCAAGCTCTGGTCTTGTTTTCACAGGAAGCAGTGTCAGCTGGCCACCATGGAAGCACTGTAGGGCACCATGGCAGCCCTTTGAAACGTGGAAGAAAGCAAGTGACCAGCTGCAATTTGTTCCAAGGCAATTGGGTGTTCGACCCTTCTTGGAATCCCCTATACGATTCCTCGAGCTGTCCCTTCATTGATGCCGAGTTTGATTGCATAAAGTACGGAAGGCCGGACAAGCAGTTCCTCAAGTACGCATGGAAACCCGACTCTTGCAACCTGCCAAGGTTTGATGGGAGTGATTTTCTGAAGAGATGGAGTGGGAAGAAGATAATGTTCGTGGGGGACTCACTGAGTCTGAACATGTGGGAATCGTTGTCGTGTATGATACATGCGTCGGTGCCAAATGCCAAGAACACTTTTGTGAAGAAGGACTCGATATCATCTGTGAACTTTCAGGATTATGGAGTGACCTTGTATCTATTCCGCACGCCGTATCTTGTAGATATAGTTAGAGAAGACGTCGGCCGTGTGTTGAAGCTGGACTCCATCGAGGCCGGAAAGTATTGGAAAGACATGGACATGTTGGTCTTCAACTCATGGCATTGGTGGACCCATAAGGGAAAAGATCGGCCATTTGATTATTTTCAGGACGGGACAAACTTGTACAAAGATATGGACCGTTTGACAGCATACCTCAAGGGGCTTTCCACTTGGGCAAAATGGGTTGACACAAATGTTGATCCTTCTAAGACCAAAGTTTTCTTTCAGGGGATTTCTCCGACCCATTACCAGGGCCAGGAATGGAACTCCCCGAAGAAGAATTGCCAGGGAGAACTTGGGCCGCTAACTGGATCGACATACCCAGCAGGGGCACCTCCAGAAGCTGGTGTTGTAAGTAGAGTGTTGAGTACTATTAAGAATCCAGTTTATTTGCTCGACATTACGACACTCTCACAGTTAAGGAAGGATGCTCATCCCTCAACATATAGCGGCGACCATTCAGGTAACGATTGCAGCCACTGGTGTCTGCCTGGGTTGCCTGATACATGGAACCAACTCTTATATGCATCACTCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

370

Amino Acids

42.04

Weight (kDa)

8.29

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	49 - 102	4.9e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	103 - 366	9.3e-95	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AatII	GACGTC	1 cut(s)	552
Acc36I	ACCTGC	1 cut(s)	315
AccB1I	GGYRCC	3 cut(s)	102, 427, 901
AccB7I	CCANNNNNTGG	1 cut(s)	914
AciI	CCGC	3 cut(s)	514, 872, 1020
AclWI	GGATC	2 cut(s)	764, 889
AcoI	YGGCCR	3 cut(s)	79, 553, 659
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	4 cut(s)	251, 281, 695, 940
AfiI	CCNNNNNNNGG	5 cut(s)	820, 826, 878, 898, 914
AflIII	ACRYGT	2 cut(s)	390, 609
AgsI	TTSAA	4 cut(s)	41, 121, 565, 622
AjnI	CCWGG	4 cut(s)	819, 825, 855, 1060
AleI	CACNNNNGTG	1 cut(s)	449
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	7 cut(s)	20, 44, 77, 147, 213, 568, 914
AluI	AGCT	7 cut(s)	20, 44, 77, 147, 213, 568, 914
AlwI	GGATC	2 cut(s)	764, 889
AlwNI	CAGNNNCTG	2 cut(s)	914, 1050
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	7 cut(s)	79, 257, 553, 582, 659, 823, 869
ApeKI	GCWGC	3 cut(s)	111, 147, 1044
AspS9I	GGNCC	4 cut(s)	639, 706, 823, 869
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	639, 706
BaeGI	GKGCMC	2 cut(s)	105, 904
BaeI	ACNNNNGTAYC	2 cut(s)	407, 440
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	3 cut(s)	102, 427, 901
BbsI	GAAGAC	2 cut(s)	552, 610
BbvI	GCAGC	3 cut(s)	123, 134, 1056
BccI	CCATC	3 cut(s)	314, 336, 584
BceAI	ACGGC	2 cut(s)	505, 540
BciT130I	CCWGG	4 cut(s)	821, 827, 857, 1062
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	315
BisI	GCNGC	5 cut(s)	112, 148, 872, 1021, 1045
BlsI	GCNGC	5 cut(s)	113, 149, 873, 1022, 1046
BmcAI	AGTACT	1 cut(s)	940
Bme1390I	CCNGG	4 cut(s)	821, 827, 857, 1062
Bme18I	GGWCC	2 cut(s)	639, 706
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	4 cut(s)	639, 706, 823, 869
BmiI	GGNNCC	6 cut(s)	14, 104, 429, 641, 903, 1082
BmrFI	CCNGG	4 cut(s)	821, 827, 857, 1062
BmsI	GCATC	3 cut(s)	217, 988, 1106
BpiI	GAAGAC	2 cut(s)	552, 610
BpmI	CTGGAG	1 cut(s)	891
BpuEI	CTTGAG	2 cut(s)	260, 710
BsaBI	GATNNNNATC	1 cut(s)	1002
BsaHI	GRCGYC	1 cut(s)	549
BsaJI	CCNNGG	7 cut(s)	85, 106, 160, 311, 820, 856, 1061
Bsc4I	CCNNNNNNNGG	5 cut(s)	820, 826, 878, 898, 914
Bse1I	ACTGG	3 cut(s)	883, 953, 1055
Bse8I	GATNNNNATC	1 cut(s)	1002
BseBI	CCWGG	4 cut(s)	821, 827, 857, 1062
BseDI	CCNNGG	7 cut(s)	85, 106, 160, 311, 820, 856, 1061
BseGI	GGATG	2 cut(s)	1003, 1003
BseJI	GATNNNNATC	1 cut(s)	1002
BseLI	CCNNNNNNNGG	5 cut(s)	820, 826, 878, 898, 914
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	3 cut(s)	883, 953, 1055
BseSI	GKGCMC	2 cut(s)	105, 904
BseX3I	CGGCCG	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	123, 134, 1056
BseYI	CCCAGC	1 cut(s)	892
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	7 cut(s)	81, 259, 555, 584, 661, 825, 871
BshNI	GGYRCC	3 cut(s)	102, 427, 901
BsiEI	CGRYCG	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	260, 585
BslFI	GGGAC	3 cut(s)	201, 386, 697
BslI	CCNNNNNNNGG	5 cut(s)	820, 826, 878, 898, 914
BsmFI	GGGAC	3 cut(s)	201, 386, 697
BsnI	GGCC	7 cut(s)	81, 259, 555, 584, 661, 825, 871
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	105, 904
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	3 cut(s)	655, 769, 881
Bsp19I	CCATGG	2 cut(s)	85, 106
BspACI	CCGC	3 cut(s)	514, 872, 1020
BspANI	GGCC	7 cut(s)	81, 259, 555, 584, 661, 825, 871
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	6 cut(s)	14, 104, 429, 641, 903, 1082
BspMI	ACCTGC	1 cut(s)	315
BspPI	GGATC	2 cut(s)	764, 889
BspT107I	GGYRCC	3 cut(s)	102, 427, 901
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	3 cut(s)	883, 953, 1055
BssECI	CCNNGG	7 cut(s)	85, 106, 160, 311, 820, 856, 1061
BssMI	GATC	3 cut(s)	655, 769, 881
BssNI	GRCGYC	1 cut(s)	549
BssT1I	CCWWGG	4 cut(s)	85, 106, 160, 311
Bst2UI	CCWGG	4 cut(s)	821, 827, 857, 1062
Bst4CI	ACNGT	3 cut(s)	97, 710, 987
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	1 cut(s)	549
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	2 cut(s)	79, 518
BstDEI	CTNAG	2 cut(s)	380, 777
BstDSI	CCRYGG	2 cut(s)	85, 106
BstF5I	GGATG	2 cut(s)	1003, 1003
BstKTI	GATC	3 cut(s)	658, 772, 884
BstMBI	GATC	3 cut(s)	655, 769, 881
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 265, 1066
BstNI	CCWGG	4 cut(s)	821, 827, 857, 1062
BstNSI	RCATGY	3 cut(s)	394, 422, 613
BstSCI	CCNGG	4 cut(s)	819, 825, 855, 1060
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	2 cut(s)	105, 904
BstV1I	GCAGC	3 cut(s)	123, 134, 1056
BstV2I	GAAGAC	2 cut(s)	552, 610
BstZI	CGGCCG	1 cut(s)	553
BsuRI	GGCC	7 cut(s)	81, 259, 555, 584, 661, 825, 871
BtgI	CCRYGG	2 cut(s)	85, 106
BtsCI	GGATG	2 cut(s)	1003, 1003
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	4 cut(s)	75, 93, 377, 1048
BveI	ACCTGC	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	79, 518
CaiI	CAGNNNCTG	2 cut(s)	914, 1050
Cfr13I	GGNCC	4 cut(s)	639, 706, 823, 869
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	4 cut(s)	250, 280, 694, 939
CviQI	GTAC	4 cut(s)	250, 280, 694, 939
DdeI	CTNAG	2 cut(s)	380, 777
DpnI	GATC	3 cut(s)	657, 771, 883
DpnII	GATC	3 cut(s)	655, 769, 881
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
EaeI	YGGCCR	3 cut(s)	79, 553, 659
EagI	CGGCCG	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EclXI	CGGCCG	1 cut(s)	553
Eco130I	CCWWGG	4 cut(s)	85, 106, 160, 311
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	639, 706
Eco52I	CGGCCG	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	208
EcoRII	CCWGG	4 cut(s)	819, 825, 855, 1060
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	4 cut(s)	85, 106, 160, 311
EcoT22I	ATGCAT	1 cut(s)	1099
ErhI	CCWWGG	4 cut(s)	85, 106, 160, 311
FaqI	GGGAC	3 cut(s)	201, 386, 697
Fnu4HI	GCNGC	5 cut(s)	112, 148, 872, 1021, 1045
FokI	GGATG	2 cut(s)	990, 1010
Fsp4HI	GCNGC	5 cut(s)	112, 148, 872, 1021, 1045
GluI	GCNGC	5 cut(s)	112, 148, 872, 1021, 1045
GsaI	CCCAGC	1 cut(s)	896
GsuI	CTGGAG	1 cut(s)	891
HaeIII	GGCC	7 cut(s)	81, 259, 555, 584, 661, 825, 871
HapII	CCGG	2 cut(s)	260, 585
HgaI	GACGC	1 cut(s)	411
Hin1I	GRCGYC	1 cut(s)	549
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	9 cut(s)	190, 203, 296, 374, 382, 398, 461, 572, 949
HpaII	CCGG	2 cut(s)	260, 585
Hpy166II	GTNNAC	3 cut(s)	478, 639, 757
Hpy188I	TCNGA	3 cut(s)	336, 387, 810
Hpy188III	TCNNGA	3 cut(s)	485, 677, 908
Hpy8I	GTNNAC	3 cut(s)	478, 639, 757
Hpy99I	CGWCG	2 cut(s)	427, 554
HpyAV	CCTTC	6 cut(s)	192, 229, 249, 451, 783, 988
HpyCH4III	ACNGT	3 cut(s)	97, 710, 987
HpyCH4IV	ACGT	2 cut(s)	124, 549
HpyCH4V	TGCA	5 cut(s)	150, 243, 303, 1044, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 265, 1066
HpyF3I	CTNAG	2 cut(s)	380, 777
HpySE526I	ACGT	2 cut(s)	124, 549
Hsp92I	GRCGYC	1 cut(s)	549
Kzo9I	GATC	3 cut(s)	655, 769, 881
LmnI	GCTCC	1 cut(s)	18
Lsp1109I	GCAGC	3 cut(s)	123, 134, 1056
LweI	GCATC	3 cut(s)	217, 988, 1106
MaeII	ACGT	2 cut(s)	124, 549
MaeIII	GTNAC	3 cut(s)	139, 496, 1034
MalI	GATC	3 cut(s)	657, 771, 883
MboI	GATC	3 cut(s)	655, 769, 881
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	105, 904
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	3 cut(s)	151, 166, 850
MluNI	TGGCCA	1 cut(s)	81
MlyI	GAGTC	5 cut(s)	290, 368, 391, 455, 566
MmeI	TCCRAC	1 cut(s)	833
MnlI	CCTC	7 cut(s)	38, 217, 284, 574, 734, 915, 1018
Mox20I	TGGCCA	1 cut(s)	81
Mph1103I	ATGCAT	1 cut(s)	1099
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	2 cut(s)	945, 989
MslI	CAYNNNNRTG	2 cut(s)	449, 608
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	77, 147
MspI	CCGG	2 cut(s)	260, 585
MspR9I	CCNGG	4 cut(s)	821, 827, 857, 1062
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	4 cut(s)	821, 827, 857, 1062
MwoI	GCNNNNNNNGC	3 cut(s)	74, 265, 1066
NcoI	CCATGG	2 cut(s)	85, 106
NdeII	GATC	3 cut(s)	655, 769, 881
NlaIV	GGNNCC	6 cut(s)	14, 104, 429, 641, 903, 1082
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	139, 496
NsiI	ATGCAT	1 cut(s)	1099
NspI	RCATGY	3 cut(s)	394, 422, 613
OliI	CACNNNNGTG	1 cut(s)	449
PaeR7I	CTCGAG	1 cut(s)	208
PciI	ACATGT	2 cut(s)	390, 609
PfeI	GAWTC	4 cut(s)	190, 203, 398, 949
PflMI	CCANNNNNTGG	1 cut(s)	914
PkrI	GCNGC	5 cut(s)	113, 149, 873, 1022, 1046
PleI	GAGTC	5 cut(s)	290, 368, 390, 455, 566
PpsI	GAGTC	5 cut(s)	290, 368, 390, 455, 566
PscI	ACATGT	2 cut(s)	390, 609
Psp6I	CCWGG	4 cut(s)	819, 825, 855, 1060
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	4 cut(s)	819, 825, 855, 1060
PspN4I	GGNNCC	6 cut(s)	14, 104, 429, 641, 903, 1082
PspPI	GGNCC	4 cut(s)	639, 706, 823, 869
PspXI	VCTCGAGB	1 cut(s)	208
PstNI	CAGNNNCTG	2 cut(s)	914, 1050
PvuII	CAGCTG	2 cut(s)	77, 147
RsaI	GTAC	4 cut(s)	251, 281, 695, 940
RsaNI	GTAC	4 cut(s)	250, 280, 694, 939
RseI	CAYNNNNRTG	2 cut(s)	449, 608
SaqAI	TTAA	2 cut(s)	945, 989
SatI	GCNGC	5 cut(s)	112, 148, 872, 1021, 1045
Sau3AI	GATC	3 cut(s)	655, 769, 881
Sau96I	GGNCC	4 cut(s)	639, 706, 823, 869
ScaI	AGTACT	1 cut(s)	940
SchI	GAGTC	5 cut(s)	290, 368, 391, 455, 566
ScrFI	CCNGG	4 cut(s)	821, 827, 857, 1062
SduI	GDGCHC	2 cut(s)	105, 904
SfaNI	GCATC	3 cut(s)	217, 988, 1106
SfcI	CTRYAG	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	208
SinI	GGWCC	2 cut(s)	639, 706
SlaI	CTCGAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	449, 608
SmlI	CTYRAG	3 cut(s)	208, 275, 725
SmoI	CTYRAG	3 cut(s)	208, 275, 725
Sse9I	AATT	3 cut(s)	151, 166, 850
SsiI	CCGC	3 cut(s)	514, 872, 1020
StyD4I	CCNGG	4 cut(s)	819, 825, 855, 1060
StyI	CCWWGG	4 cut(s)	85, 106, 160, 311
TaaI	ACNGT	3 cut(s)	97, 710, 987
TaiI	ACGT	2 cut(s)	127, 552
TaqI	TCGA	6 cut(s)	177, 209, 464, 579, 884, 966
TasI	AATT	3 cut(s)	151, 166, 850
TatI	WGTACW	2 cut(s)	693, 938
TauI	GCSGC	2 cut(s)	874, 1023
TfiI	GAWTC	4 cut(s)	190, 203, 398, 949
Tru1I	TTAA	2 cut(s)	945, 989
Tru9I	TTAA	2 cut(s)	945, 989
TscAI	CASTG	4 cut(s)	75, 100, 384, 1055
TseFI	GTSAC	2 cut(s)	139, 496
TseI	GCWGC	3 cut(s)	111, 147, 1044
Tsp45I	GTSAC	2 cut(s)	139, 496
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	4 cut(s)	75, 100, 384, 1055
Van91I	CCANNNNNTGG	1 cut(s)	914
VpaK11BI	GGWCC	2 cut(s)	639, 706
XceI	RCATGY	3 cut(s)	394, 422, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	863
XhoI	CTCGAG	1 cut(s)	208
ZraI	GACGTC	1 cut(s)	550
ZrmI	AGTACT	1 cut(s)	940
Zsp2I	ATGCAT	1 cut(s)	1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.