Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Reverse (-)

11314677 .. 11316899

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCATTCTCGTGCTTTCATCACCTTCTTCCTCTAGCAGTACTACTGTCATTGACACTAACCCATGTAGTGAAAGGGAATCAAGTTTTTGATCAAATTTTTGATTATGCGAAACGAGCTGGAGTACTGAAGCAATCAGCAAATGGCTGCAATTTGTTTCAAGGGAGTTGGGTTGTTGATGATGAATATCCACTTTACAATGCTTCAAGCTGTCCATTCATTGGTTTCAATTGCATAAAGAATGGTAGACCTGATCAACAGTACCTCAAGTATAGATGGAAGCCTACTGGTTGTGACCTTCCAAGATTCAATGGCCTAGATTTCATGGAAAGATACAGAGGGAAAAAGATTATGTTTGTGGGAGATTCCCTAAGTAACAATATGTGGCAATCCCTTACATGCATGCTGCATGTTGCAGCCCTAAATTCCAAATACACCTTGACACAAGCAGGGTCGCTTTCCACATTTTACCTCGAGGAATATGAACTGTCGGTTGTGTTTCTGAAAAATGGGTTCATAGTGGACTTGGCTTATGAAAAAATAGGCAAAGTCCTTAAACTTGACTCCATCGGCACTGGCAACCTTTGGAAAGGAGTAGACATGTTGATCTTCAACACATATCACTGGTGGACTCATTCCGGCGGCTCTCAGACATGGGACTACTTTCAAGTGGGACAAAAGGTAGTGAAAGAAATGGATCACTTGGAGGCATACAAGATTGCATTAACAACTTGGGCTAAATGGGTTGATTCCAACATTGATTTTTCAAAGACCAAAGTCTTTTTTCAAGGGGTTGCTGCAGTTCATATTGATGGAAAGGAATGGAAGGAACCAAAAGCAAGAACTTGCAGAGGACAAGCCCAACCATTGATGGGAACTAGTTATCCAGGCCCAAGTCATCCAGGAGAAGCTATTGTGAAGAGTGTGTTGAGTACAATGGCAAAACCAATTTACTTGCTTGACATTACATTGCTCACACAGCTAAGAAAAGATGGGCACCCTTCAATTTATGCAGGCATGGGTTCCAAATTTGTGGACTGCAGCCACTGGTGTCTTCCTGGTGCTCCTGATGCTTGGAATGAACTTCTATATGCAGTTTTGAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

370

Amino Acids

41.73

Weight (kDa)

8.43

Isoelectric Point (pI)

19.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	49 - 99	4.3e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	100 - 365	2.4e-88	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	473
AccB1I	GGYRCC	1 cut(s)	996
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	247, 597
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	1 cut(s)	705
AcsI	RAATTY	3 cut(s)	96, 424, 1028
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	4 cut(s)	42, 126, 263, 934
AfiI	CCNNNNNNNGG	2 cut(s)	221, 872
AflIII	ACRYGT	1 cut(s)	600
AhlI	ACTAGT	1 cut(s)	878
AjnI	CCWGG	3 cut(s)	886, 901, 1057
AloI	GAACNNNNNNTCC	2 cut(s)	868, 900
AluBI	AGCT	4 cut(s)	119, 210, 911, 982
AluI	AGCT	4 cut(s)	119, 210, 911, 982
Alw21I	GWGCWC	1 cut(s)	1066
AlwI	GGATC	1 cut(s)	705
AlwNI	CAGNNNCTG	1 cut(s)	1047
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	313, 889
ApeKI	GCWGC	5 cut(s)	147, 406, 416, 797, 1041
ApoI	RAATTY	3 cut(s)	96, 424, 1028
AspS9I	GGNCC	1 cut(s)	890
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	999
BanI	GGYRCC	1 cut(s)	996
BauI	CACGAG	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	1046
Bbv12I	GWGCWC	1 cut(s)	1066
BbvI	GCAGC	5 cut(s)	134, 393, 428, 784, 1053
BccI	CCATC	5 cut(s)	270, 575, 806, 865, 986
BciT130I	CCWGG	3 cut(s)	888, 903, 1059
BclI	TGATCA	2 cut(s)	91, 253
BcuI	ACTAGT	1 cut(s)	878
BfaI	CTAG	3 cut(s)	35, 317, 879
BfmI	CTRYAG	2 cut(s)	798, 1039
BisI	GCNGC	6 cut(s)	148, 407, 417, 643, 798, 1042
BlsI	GCNGC	6 cut(s)	149, 408, 418, 644, 799, 1043
BmcAI	AGTACT	2 cut(s)	42, 126
Bme1390I	CCNGG	3 cut(s)	888, 903, 1059
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	890
BmiI	GGNNCC	3 cut(s)	831, 998, 1024
BmrFI	CCNGG	3 cut(s)	888, 903, 1059
BmsI	GCATC	1 cut(s)	1060
BoxI	GACNNNNGTC	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	1046
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 872
Bse1I	ACTGG	4 cut(s)	292, 580, 629, 1052
Bse3DI	GCAATG	1 cut(s)	968
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	888, 903, 1059
BseGI	GGATG	1 cut(s)	898
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	221, 872
BseMI	GCAATG	1 cut(s)	968
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	4 cut(s)	292, 580, 629, 1052
BseSI	GKGCMC	1 cut(s)	999
BseXI	GCAGC	5 cut(s)	134, 393, 428, 784, 1053
BshFI	GGCC	2 cut(s)	315, 891
BshNI	GGYRCC	1 cut(s)	996
BsiHKAI	GWGCWC	1 cut(s)	1066
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	2 cut(s)	671, 687
BslI	CCNNNNNNNGG	2 cut(s)	221, 872
BsmFI	GGGAC	2 cut(s)	671, 687
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	315, 891
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	999, 1066
Bsp143I	GATC	4 cut(s)	91, 253, 606, 697
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	2 cut(s)	315, 891
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	3 cut(s)	831, 998, 1024
BspMAI	CTGCAG	2 cut(s)	802, 1043
BspPI	GGATC	1 cut(s)	705
BspT107I	GGYRCC	1 cut(s)	996
BsrDI	GCAATG	1 cut(s)	968
BsrI	ACTGG	4 cut(s)	292, 580, 629, 1052
BssMI	GATC	4 cut(s)	91, 253, 606, 697
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	3 cut(s)	888, 903, 1059
Bst4CI	ACNGT	3 cut(s)	48, 261, 489
Bst6I	CTCTTC	1 cut(s)	914
BstC8I	GCNNGC	2 cut(s)	404, 1015
BstDEI	CTNAG	3 cut(s)	371, 648, 983
BstF5I	GGATG	1 cut(s)	898
BstKTI	GATC	4 cut(s)	94, 256, 609, 700
BstMBI	GATC	4 cut(s)	91, 253, 606, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 979, 1070
BstNI	CCWGG	3 cut(s)	888, 903, 1059
BstNSI	RCATGY	4 cut(s)	402, 406, 413, 604
BstPAI	GACNNNNGTC	1 cut(s)	776
BstSCI	CCNGG	3 cut(s)	886, 901, 1057
BstSFI	CTRYAG	2 cut(s)	798, 1039
BstSLI	GKGCMC	1 cut(s)	999
BstV1I	GCAGC	5 cut(s)	134, 393, 428, 784, 1053
BstV2I	GAAGAC	1 cut(s)	1046
BstXI	CCANNNNNNTGG	1 cut(s)	1033
BsuRI	GGCC	2 cut(s)	315, 891
BtsCI	GGATG	1 cut(s)	898
BtsIMutI	CAGTG	3 cut(s)	573, 622, 1045
Cac8I	GCNNGC	2 cut(s)	404, 1015
CaiI	CAGNNNCTG	1 cut(s)	1047
Cfr13I	GGNCC	1 cut(s)	890
Csp6I	GTAC	4 cut(s)	41, 125, 262, 933
CviAII	CATG	8 cut(s)	65, 325, 399, 403, 410, 601, 654, 1018
CviQI	GTAC	4 cut(s)	41, 125, 262, 933
DdeI	CTNAG	3 cut(s)	371, 648, 983
DpnI	GATC	4 cut(s)	93, 255, 608, 699
DpnII	GATC	4 cut(s)	91, 253, 606, 697
Eam1104I	CTCTTC	1 cut(s)	914
EarI	CTCTTC	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	473
EcoRII	CCWGG	3 cut(s)	886, 901, 1057
EcoT22I	ATGCAT	1 cut(s)	404
FaeI	CATG	8 cut(s)	68, 328, 402, 406, 413, 604, 657, 1021
FaqI	GGGAC	2 cut(s)	671, 687
FatI	CATG	8 cut(s)	64, 324, 398, 402, 409, 600, 653, 1017
FbaI	TGATCA	2 cut(s)	91, 253
FblI	GTMKAC	2 cut(s)	247, 597
Fnu4HI	GCNGC	6 cut(s)	148, 407, 417, 643, 798, 1042
FokI	GGATG	1 cut(s)	885
Fsp4HI	GCNGC	6 cut(s)	148, 407, 417, 643, 798, 1042
FspBI	CTAG	3 cut(s)	35, 317, 879
GluI	GCNGC	6 cut(s)	148, 407, 417, 643, 798, 1042
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	315, 891
HapII	CCGG	1 cut(s)	639
Hin1II	CATG	8 cut(s)	68, 328, 402, 406, 413, 604, 657, 1021
HinfI	GANTC	6 cut(s)	79, 306, 365, 563, 631, 749
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	5 cut(s)	248, 523, 598, 630, 1036
Hpy188I	TCNGA	2 cut(s)	504, 651
Hpy188III	TCNNGA	1 cut(s)	1067
Hpy8I	GTNNAC	5 cut(s)	248, 523, 598, 630, 1036
HpyAV	CCTTC	4 cut(s)	35, 308, 820, 1011
HpyCH4III	ACNGT	3 cut(s)	48, 261, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 979, 1070
HpyF3I	CTNAG	3 cut(s)	371, 648, 983
Hsp92II	CATG	8 cut(s)	68, 328, 402, 406, 413, 604, 657, 1021
Ksp22I	TGATCA	2 cut(s)	91, 253
Kzo9I	GATC	4 cut(s)	91, 253, 606, 697
LmnI	GCTCC	1 cut(s)	1069
Lsp1109I	GCAGC	5 cut(s)	134, 393, 428, 784, 1053
LweI	GCATC	1 cut(s)	1060
MaeI	CTAG	3 cut(s)	35, 317, 879
MaeIII	GTNAC	2 cut(s)	293, 374
MalI	GATC	4 cut(s)	93, 255, 608, 699
MboI	GATC	4 cut(s)	91, 253, 606, 697
MboII	GAAGA	4 cut(s)	20, 601, 931, 1046
MfeI	CAATTG	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	999, 1066
MluCI	AATT	7 cut(s)	96, 151, 229, 424, 948, 1005, 1028
MlyI	GAGTC	2 cut(s)	557, 625
MmeI	TCCRAC	1 cut(s)	777
MnlI	CCTC	7 cut(s)	42, 275, 332, 469, 482, 700, 845
Mph1103I	ATGCAT	1 cut(s)	404
MseI	TTAA	3 cut(s)	555, 725, 1108
MslI	CAYNNNNRTG	2 cut(s)	10, 810
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	3 cut(s)	888, 903, 1059
MunI	CAATTG	1 cut(s)	229
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	3 cut(s)	888, 903, 1059
MwoI	GCNNNNNNNGC	3 cut(s)	116, 979, 1070
NdeII	GATC	4 cut(s)	91, 253, 606, 697
NlaIII	CATG	8 cut(s)	68, 328, 402, 406, 413, 604, 657, 1021
NlaIV	GGNNCC	3 cut(s)	831, 998, 1024
NmuCI	GTSAC	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	404
NspI	RCATGY	4 cut(s)	402, 406, 413, 604
PaeI	GCATGC	1 cut(s)	406
PaeR7I	CTCGAG	1 cut(s)	473
PciI	ACATGT	1 cut(s)	600
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	4 cut(s)	79, 306, 365, 749
PflMI	CCANNNNNTGG	1 cut(s)	221
PfoI	TCCNGGA	1 cut(s)	901
PkrI	GCNGC	6 cut(s)	149, 408, 418, 644, 799, 1043
PleI	GAGTC	2 cut(s)	557, 625
PpsI	GAGTC	2 cut(s)	557, 625
PscI	ACATGT	1 cut(s)	600
PshAI	GACNNNNGTC	1 cut(s)	776
Psp6I	CCWGG	3 cut(s)	886, 901, 1057
PspGI	CCWGG	3 cut(s)	886, 901, 1057
PspN4I	GGNNCC	3 cut(s)	831, 998, 1024
PspPI	GGNCC	1 cut(s)	890
PspXI	VCTCGAGB	1 cut(s)	473
PstI	CTGCAG	2 cut(s)	802, 1043
PstNI	CAGNNNCTG	1 cut(s)	1047
RsaI	GTAC	4 cut(s)	42, 126, 263, 934
RsaNI	GTAC	4 cut(s)	41, 125, 262, 933
RseI	CAYNNNNRTG	2 cut(s)	10, 810
SaqAI	TTAA	3 cut(s)	555, 725, 1108
SatI	GCNGC	6 cut(s)	148, 407, 417, 643, 798, 1042
Sau3AI	GATC	4 cut(s)	91, 253, 606, 697
Sau96I	GGNCC	1 cut(s)	890
ScaI	AGTACT	2 cut(s)	42, 126
SchI	GAGTC	2 cut(s)	557, 625
ScrFI	CCNGG	3 cut(s)	888, 903, 1059
SduI	GDGCHC	2 cut(s)	999, 1066
SfaNI	GCATC	1 cut(s)	1060
SfcI	CTRYAG	2 cut(s)	798, 1039
Sfr274I	CTCGAG	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	10, 810
SmlI	CTYRAG	2 cut(s)	266, 473
SmoI	CTYRAG	2 cut(s)	266, 473
SpeI	ACTAGT	1 cut(s)	878
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	7 cut(s)	96, 151, 229, 424, 948, 1005, 1028
SsiI	CCGC	1 cut(s)	642
SspMI	CTAG	3 cut(s)	35, 317, 879
StyD4I	CCNGG	3 cut(s)	886, 901, 1057
TaaI	ACNGT	3 cut(s)	48, 261, 489
TaqI	TCGA	1 cut(s)	474
TasI	AATT	7 cut(s)	96, 151, 229, 424, 948, 1005, 1028
TatI	WGTACW	3 cut(s)	40, 124, 932
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	4 cut(s)	79, 306, 365, 749
Tru1I	TTAA	3 cut(s)	555, 725, 1108
Tru9I	TTAA	3 cut(s)	555, 725, 1108
TscAI	CASTG	3 cut(s)	580, 629, 1052
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	5 cut(s)	147, 406, 416, 797, 1041
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	9 cut(s)	8, 198, 208, 313, 498, 505, 549, 794, 1095
TspRI	CASTG	3 cut(s)	580, 629, 1052
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	3 cut(s)	96, 424, 1028
XceI	RCATGY	4 cut(s)	402, 406, 413, 604
XhoI	CTCGAG	1 cut(s)	473
XmiI	GTMKAC	2 cut(s)	247, 597
XspI	CTAG	3 cut(s)	35, 317, 879
ZrmI	AGTACT	2 cut(s)	42, 126
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.