Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Forward (+)

87465085 .. 87468405

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGTTTTAGGCTCCAAGCTCTGTTCCTCACATTTCTTCAAGCCCTGGTCTTGTTTTCACAGGAAGCAGTGTCAGCTGGCCACCATGGAAGCACTGTTGGGCACCATGGCAGCCCTTTGAAACGTGGAAGAAAGCAAGTGACCAGCTGCAATTTGTTCCAAGGCAATTGGGTGTTCGACCCTTCTTGGAATCCCCTGTACGATTCCTCGAGCTGTCCCTTCATTGATGCCGAGTTTGATTGCATAAAGTACGGAAGGCCTGACAAGCAGTTCCTCAAGTACGCATGGAAACCCGACTCTTGCAACCTGCCAAGGTTTGATGGAAGTGATTTTCTGAAGCGATGGAGTGGGAAGAAGATAATGTTCGTGGGGGACTCACTGAGTCTGAACATGTGGGAATCGTTGTCGTGTATGATACATGCGTCGGTGCCAAATGCCAAGAACACTTTTGTGAAGAAGGACTCGATATCATCTGTGAACTTTCAGGATTATGGAGTGACCTTGTATCTATTCCGCACGCCGTATCTTGTAGATATAGTTAGAGAAGACGTCGGCCGTGTGTTGAAGCTGGACTCCATCGAGGCCGGAAAATATTGGAAAGACATGGACATATTTGATTATTTTCAGGACGGGACCAACTTGTACAAAGATATGGACCGTTTGACAGCATATCTCAAGGGGCTTTCCACTTGGGCAAAATGGGTTGACACAAATGTTAATCCTTCTAAGACCAAAGTTTTCTTTCAGGGGATTTCTCCGACCCATTACCAGGGCCAGGAATGGAACTCCCCGAAGAAGAATTGCCAGGGAGAACTTGGGCCGCTAACTGGATCGACATACCCAGCAGGGGCACCTCCAGAAGCTGGTGTTGTAAGTAGAGTGTTGAGTACTATTAAGAATCCAGTTTATTTGCTCGACATTACGACACTCTCACAGTTAAGGAAGGATGCTCATCCCTCAACATATAGCGGCGACCATTCAGGTAACGATTGCAGCCACTGGTGTCTGCCTGGGTTGCCTGATACATGGAACCAACTCTTATACGCATCACTTATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

353

Amino Acids

39.84

Weight (kDa)

8.02

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	49 - 102	4.5e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	103 - 204	1.1e-28	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	206 - 349	2.7e-49	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	552
Acc36I	ACCTGC	1 cut(s)	315
AccB1I	GGYRCC	3 cut(s)	102, 427, 850
AccB7I	CCANNNNNTGG	1 cut(s)	863
AciI	CCGC	3 cut(s)	514, 821, 969
AclWI	GGATC	1 cut(s)	838
AcoI	YGGCCR	2 cut(s)	79, 553
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	5 cut(s)	200, 251, 281, 644, 889
AfiI	CCNNNNNNNGG	5 cut(s)	769, 775, 827, 847, 863
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	41, 121, 565
AjnI	CCWGG	5 cut(s)	45, 768, 774, 804, 1009
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	6 cut(s)	20, 77, 147, 213, 568, 863
AluI	AGCT	6 cut(s)	20, 77, 147, 213, 568, 863
AlwI	GGATC	1 cut(s)	838
AlwNI	CAGNNNCTG	2 cut(s)	863, 999
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	6 cut(s)	79, 257, 553, 582, 772, 818
ApeKI	GCWGC	3 cut(s)	111, 147, 993
AspS9I	GGNCC	4 cut(s)	633, 655, 772, 818
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	633, 655
BaeGI	GKGCMC	2 cut(s)	105, 853
BaeI	ACNNNNGTAYC	2 cut(s)	407, 440
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	3 cut(s)	102, 427, 850
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	123, 134, 1005
BccI	CCATC	3 cut(s)	314, 336, 584
BceAI	ACGGC	2 cut(s)	505, 540
BciT130I	CCWGG	5 cut(s)	47, 770, 776, 806, 1011
BfuAI	ACCTGC	1 cut(s)	315
BisI	GCNGC	5 cut(s)	112, 148, 821, 970, 994
BlsI	GCNGC	5 cut(s)	113, 149, 822, 971, 995
BmcAI	AGTACT	1 cut(s)	889
Bme1390I	CCNGG	5 cut(s)	47, 770, 776, 806, 1011
Bme18I	GGWCC	2 cut(s)	633, 655
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	4 cut(s)	633, 655, 772, 818
BmiI	GGNNCC	6 cut(s)	14, 104, 429, 634, 852, 1031
BmrFI	CCNGG	5 cut(s)	47, 770, 776, 806, 1011
BmsI	GCATC	3 cut(s)	217, 937, 1055
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	840
BpuEI	CTTGAG	2 cut(s)	260, 659
BsaBI	GATNNNNATC	1 cut(s)	951
BsaHI	GRCGYC	1 cut(s)	549
BsaJI	CCNNGG	8 cut(s)	45, 85, 106, 160, 311, 769, 805, 1010
Bsc4I	CCNNNNNNNGG	5 cut(s)	769, 775, 827, 847, 863
Bse1I	ACTGG	3 cut(s)	832, 902, 1004
Bse8I	GATNNNNATC	1 cut(s)	951
BseBI	CCWGG	5 cut(s)	47, 770, 776, 806, 1011
BseDI	CCNNGG	8 cut(s)	45, 85, 106, 160, 311, 769, 805, 1010
BseGI	GGATG	2 cut(s)	952, 952
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	5 cut(s)	769, 775, 827, 847, 863
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	3 cut(s)	832, 902, 1004
BseSI	GKGCMC	2 cut(s)	105, 853
BseX3I	CGGCCG	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	123, 134, 1005
BseYI	CCCAGC	1 cut(s)	841
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	6 cut(s)	81, 259, 555, 584, 774, 820
BshNI	GGYRCC	3 cut(s)	102, 427, 850
BsiEI	CGRYCG	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	3 cut(s)	201, 386, 646
BslI	CCNNNNNNNGG	5 cut(s)	769, 775, 827, 847, 863
BsmFI	GGGAC	3 cut(s)	201, 386, 646
BsnI	GGCC	6 cut(s)	81, 259, 555, 584, 774, 820
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	105, 853
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	1 cut(s)	830
Bsp19I	CCATGG	2 cut(s)	85, 106
BspACI	CCGC	3 cut(s)	514, 821, 969
BspANI	GGCC	6 cut(s)	81, 259, 555, 584, 774, 820
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	6 cut(s)	14, 104, 429, 634, 852, 1031
BspMI	ACCTGC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	838
BspT107I	GGYRCC	3 cut(s)	102, 427, 850
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	3 cut(s)	832, 902, 1004
BssECI	CCNNGG	8 cut(s)	45, 85, 106, 160, 311, 769, 805, 1010
BssMI	GATC	1 cut(s)	830
BssNI	GRCGYC	1 cut(s)	549
BssT1I	CCWWGG	4 cut(s)	85, 106, 160, 311
Bst2UI	CCWGG	5 cut(s)	47, 770, 776, 806, 1011
Bst4CI	ACNGT	3 cut(s)	97, 659, 936
BstACI	GRCGYC	1 cut(s)	549
BstAUI	TGTACA	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	79, 518
BstDEI	CTNAG	2 cut(s)	380, 726
BstDSI	CCRYGG	2 cut(s)	85, 106
BstF5I	GGATG	2 cut(s)	952, 952
BstKTI	GATC	1 cut(s)	833
BstMBI	GATC	1 cut(s)	830
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 265, 1015
BstNI	CCWGG	5 cut(s)	47, 770, 776, 806, 1011
BstNSI	RCATGY	2 cut(s)	394, 422
BstSCI	CCNGG	5 cut(s)	45, 768, 774, 804, 1009
BstSLI	GKGCMC	2 cut(s)	105, 853
BstV1I	GCAGC	3 cut(s)	123, 134, 1005
BstV2I	GAAGAC	1 cut(s)	552
BstZI	CGGCCG	1 cut(s)	553
BsuRI	GGCC	6 cut(s)	81, 259, 555, 584, 774, 820
BtgI	CCRYGG	2 cut(s)	85, 106
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	952, 952
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	4 cut(s)	75, 93, 377, 997
BveI	ACCTGC	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	79, 518
CaiI	CAGNNNCTG	2 cut(s)	863, 999
Cfr13I	GGNCC	4 cut(s)	633, 655, 772, 818
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	5 cut(s)	199, 250, 280, 643, 888
CviAII	CATG	8 cut(s)	86, 107, 285, 391, 419, 604, 1026, 1057
CviQI	GTAC	5 cut(s)	199, 250, 280, 643, 888
DdeI	CTNAG	2 cut(s)	380, 726
DpnI	GATC	1 cut(s)	832
DpnII	GATC	1 cut(s)	830
EaeI	YGGCCR	2 cut(s)	79, 553
EagI	CGGCCG	1 cut(s)	553
EclXI	CGGCCG	1 cut(s)	553
Eco130I	CCWWGG	4 cut(s)	85, 106, 160, 311
Eco147I	AGGCCT	1 cut(s)	259
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	633, 655
Eco52I	CGGCCG	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	208
EcoRII	CCWGG	5 cut(s)	45, 768, 774, 804, 1009
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	4 cut(s)	85, 106, 160, 311
ErhI	CCWWGG	4 cut(s)	85, 106, 160, 311
FaeI	CATG	8 cut(s)	89, 110, 288, 394, 422, 607, 1029, 1060
FaqI	GGGAC	3 cut(s)	201, 386, 646
FatI	CATG	8 cut(s)	85, 106, 284, 390, 418, 603, 1025, 1056
Fnu4HI	GCNGC	5 cut(s)	112, 148, 821, 970, 994
FokI	GGATG	2 cut(s)	939, 959
Fsp4HI	GCNGC	5 cut(s)	112, 148, 821, 970, 994
GluI	GCNGC	5 cut(s)	112, 148, 821, 970, 994
GsaI	CCCAGC	1 cut(s)	845
GsuI	CTGGAG	1 cut(s)	840
HaeIII	GGCC	6 cut(s)	81, 259, 555, 584, 774, 820
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	411
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	8 cut(s)	89, 110, 288, 394, 422, 607, 1029, 1060
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	9 cut(s)	190, 203, 296, 374, 382, 398, 461, 572, 898
HpaII	CCGG	1 cut(s)	585
Hpy166II	GTNNAC	2 cut(s)	478, 706
Hpy188I	TCNGA	3 cut(s)	336, 387, 759
Hpy188III	TCNNGA	3 cut(s)	485, 626, 857
Hpy8I	GTNNAC	2 cut(s)	478, 706
Hpy99I	CGWCG	2 cut(s)	427, 554
HpyAV	CCTTC	6 cut(s)	192, 229, 249, 451, 732, 937
HpyCH4III	ACNGT	3 cut(s)	97, 659, 936
HpyCH4IV	ACGT	2 cut(s)	124, 549
HpyCH4V	TGCA	4 cut(s)	150, 243, 303, 993
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 265, 1015
HpyF3I	CTNAG	2 cut(s)	380, 726
HpySE526I	ACGT	2 cut(s)	124, 549
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	8 cut(s)	89, 110, 288, 394, 422, 607, 1029, 1060
Kzo9I	GATC	1 cut(s)	830
LmnI	GCTCC	1 cut(s)	18
Lsp1109I	GCAGC	3 cut(s)	123, 134, 1005
LweI	GCATC	3 cut(s)	217, 937, 1055
MaeII	ACGT	2 cut(s)	124, 549
MaeIII	GTNAC	3 cut(s)	139, 496, 983
MalI	GATC	1 cut(s)	832
MboI	GATC	1 cut(s)	830
MboII	GAAGA	8 cut(s)	29, 141, 364, 367, 466, 557, 805, 808
MfeI	CAATTG	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	105, 853
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	3 cut(s)	151, 166, 799
MluNI	TGGCCA	1 cut(s)	81
MlyI	GAGTC	5 cut(s)	290, 368, 391, 455, 566
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	6 cut(s)	38, 217, 284, 574, 864, 967
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	3 cut(s)	717, 894, 938
MslI	CAYNNNNRTG	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	77, 147
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	5 cut(s)	47, 770, 776, 806, 1011
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	5 cut(s)	47, 770, 776, 806, 1011
MwoI	GCNNNNNNNGC	3 cut(s)	74, 265, 1015
NcoI	CCATGG	2 cut(s)	85, 106
NdeII	GATC	1 cut(s)	830
NlaIII	CATG	8 cut(s)	89, 110, 288, 394, 422, 607, 1029, 1060
NlaIV	GGNNCC	6 cut(s)	14, 104, 429, 634, 852, 1031
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	139, 496
NspI	RCATGY	2 cut(s)	394, 422
OliI	CACNNNNGTG	1 cut(s)	449
PaeR7I	CTCGAG	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	259
PciI	ACATGT	1 cut(s)	390
PfeI	GAWTC	4 cut(s)	190, 203, 398, 898
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	5 cut(s)	113, 149, 822, 971, 995
PleI	GAGTC	5 cut(s)	290, 368, 390, 455, 566
PpsI	GAGTC	5 cut(s)	290, 368, 390, 455, 566
PscI	ACATGT	1 cut(s)	390
Psp6I	CCWGG	5 cut(s)	45, 768, 774, 804, 1009
PspFI	CCCAGC	1 cut(s)	841
PspGI	CCWGG	5 cut(s)	45, 768, 774, 804, 1009
PspN4I	GGNNCC	6 cut(s)	14, 104, 429, 634, 852, 1031
PspPI	GGNCC	4 cut(s)	633, 655, 772, 818
PspXI	VCTCGAGB	1 cut(s)	208
PstNI	CAGNNNCTG	2 cut(s)	863, 999
PvuII	CAGCTG	2 cut(s)	77, 147
RsaI	GTAC	5 cut(s)	200, 251, 281, 644, 889
RsaNI	GTAC	5 cut(s)	199, 250, 280, 643, 888
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	3 cut(s)	717, 894, 938
SatI	GCNGC	5 cut(s)	112, 148, 821, 970, 994
Sau3AI	GATC	1 cut(s)	830
Sau96I	GGNCC	4 cut(s)	633, 655, 772, 818
ScaI	AGTACT	1 cut(s)	889
SchI	GAGTC	5 cut(s)	290, 368, 391, 455, 566
ScrFI	CCNGG	5 cut(s)	47, 770, 776, 806, 1011
SduI	GDGCHC	2 cut(s)	105, 853
SfaNI	GCATC	3 cut(s)	217, 937, 1055
Sfr274I	CTCGAG	1 cut(s)	208
SinI	GGWCC	2 cut(s)	633, 655
SlaI	CTCGAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	3 cut(s)	208, 275, 674
SmoI	CTYRAG	3 cut(s)	208, 275, 674
Sse9I	AATT	3 cut(s)	151, 166, 799
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	3 cut(s)	514, 821, 969
SspI	AATATT	1 cut(s)	593
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	5 cut(s)	45, 768, 774, 804, 1009
StyI	CCWWGG	4 cut(s)	85, 106, 160, 311
TaaI	ACNGT	3 cut(s)	97, 659, 936
TaiI	ACGT	2 cut(s)	127, 552
TaqI	TCGA	6 cut(s)	177, 209, 464, 579, 833, 915
TasI	AATT	3 cut(s)	151, 166, 799
TatI	WGTACW	2 cut(s)	642, 887
TauI	GCSGC	2 cut(s)	823, 972
TfiI	GAWTC	4 cut(s)	190, 203, 398, 898
Tru1I	TTAA	3 cut(s)	717, 894, 938
Tru9I	TTAA	3 cut(s)	717, 894, 938
TscAI	CASTG	4 cut(s)	75, 100, 384, 1004
TseFI	GTSAC	2 cut(s)	139, 496
TseI	GCWGC	3 cut(s)	111, 147, 993
Tsp45I	GTSAC	2 cut(s)	139, 496
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	4 cut(s)	75, 100, 384, 1004
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	2 cut(s)	633, 655
XceI	RCATGY	2 cut(s)	394, 422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XhoI	CTCGAG	1 cut(s)	208
ZraI	GACGTC	1 cut(s)	550
ZrmI	AGTACT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.