Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005871

Physical Location & Seq

Genomic Coordinates Reverse (-)

24286399 .. 24288753

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATCATTAATTATGATACGTATAACATTAGAGCTGGAGTACTGATGAAGCAGTCATCACATGGCTGCAATTTTTTTCAAGGGAGTTGGGTTGCTGACGATGAATACCCACTTTACAATGCTTCAAGCTGTCCATTCATTGGATTCAATTGCATAAAGAATGGTAGACCTGATAAACAGTACTTCAAATATAGATGGAAGCCTACTGGTTGTGACCTTCCAAGATTCAATGGACTGGATTTCATGGAAAGATACAGAGGGAAAAAGATAATGTTTGTGGGAGACTCCCTAAGTAACAATATGTGGCAGTCCCTTACATGCATACTACATGTTGCAGCCCCAAACTCCAATTACACCTTAATCCAAGCAGGGTTGCTTTCCACATTTTACCTCAAGGAATATGCACTGTCGGTTATGTTTTTGAAAAATGGGTTCATAGTGGACTTGGCTTATGAAAAAATAGGCAAAGTCCTAAAACTTGACTCCATCAGCACCGGCAACCTGTGGAAAGGAGTAGACATGTTGATCTTCACCACATATCACTGGTGGACTCATTCCGGCCATTCTCAGACATGGAACTACTTTCAAGTGGGACAAAAGATGGTGAAAGAAATGGATCACATGGAGGCCTACAAGATTGCATTAACAACTTGGGCTAAATGGGTTGATTCCAACATTGATTTTTCAAAGACCAAAGTCTTTTTTCAAGGGGTTGCTGCAGTTCATATTGATGGAAAGGAATGGAAGGAACCAAAAGCAAGAAGTTGCAGAGGACAAACAAAACCACTGCTGGGGGCTAGTTATCCAAGCCCAACTCATCCAGGAGAAGCAATTGTGAAGAGTGTATTGAGTACAGTGGCAAAGCCAATTTACTTGCTTGACATTACATTGCTGACACAGCTAAGAAAAGATGGGCACCCTTCAATTTATGCCGGCCTTGGTCCCAAATTTGTGGACTGCAGTCACTGGTGTCTTCCTGGTGCTCCTGATGCTTGGAATGAACTTCTGTATGCAGCTTTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

341

Amino Acids

38.79

Weight (kDa)

8.91

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	22 - 72	2.3e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	73 - 338	1.6e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29050 AT2G34070 AT2G34070
fragaria_vesca	FvH4_3g07990 FvH4_3g07990 FvH4_3g17800 FvH4_3g17800
malus_domestica	MD05G1303400.v1.1 MD10G1282500.v1.1
prunus_persica	Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1 Prupe.4G059400_v2.0.a1
pyrus_communis	pycom05g28040 pycom10g23560
rosa_chinensis	RchiOBHm_Chr5g0010331
rosa_laevigata	RLG00000031738
rosa_multiflora	Rmu_co8488479.1_g000001 Rmu_sc0007816.1_g000002
rosa_roxburghii	Rroxscaffold_1G00065920
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081400 Rh5BG076300 Rh5BG206000 Rh5CG089600 Rh5DG077000
rosa_wichuraiana	Rw5G007540 Rw5G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	915
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccI	GTMKAC	2 cut(s)	166, 516
AclWI	GGATC	1 cut(s)	624
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	947
AfaI	GTAC	3 cut(s)	42, 182, 853
AfiI	CCNNNNNNNGG	2 cut(s)	140, 791
AflIII	ACRYGT	2 cut(s)	328, 519
AjnI	CCWGG	2 cut(s)	820, 976
AluBI	AGCT	4 cut(s)	35, 129, 901, 1016
AluI	AGCT	4 cut(s)	35, 129, 901, 1016
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	624
AlwNI	CAGNNNCTG	1 cut(s)	966
AoxI	GGCC	3 cut(s)	559, 627, 934
ApeKI	GCWGC	4 cut(s)	66, 335, 716, 1013
ApoI	RAATTY	1 cut(s)	947
AseI	ATTAAT	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	941
AsuHPI	GGTGA	2 cut(s)	523, 616
AvaII	GGWCC	1 cut(s)	941
BaeGI	GKGCMC	1 cut(s)	918
BanI	GGYRCC	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	965
Bbv12I	GWGCWC	1 cut(s)	985
BbvI	GCAGC	3 cut(s)	53, 347, 703
BccI	CCATC	5 cut(s)	189, 494, 595, 725, 905
BciT130I	CCWGG	2 cut(s)	822, 978
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	2 cut(s)	798, 1024
BfmI	CTRYAG	2 cut(s)	717, 958
BisI	GCNGC	4 cut(s)	67, 336, 717, 1014
BlsI	GCNGC	4 cut(s)	68, 337, 718, 1015
BmcAI	AGTACT	2 cut(s)	42, 182
Bme1390I	CCNGG	2 cut(s)	822, 978
Bme18I	GGWCC	1 cut(s)	941
BmgT120I	GGNCC	1 cut(s)	941
BmiI	GGNNCC	3 cut(s)	750, 917, 943
BmrFI	CCNGG	2 cut(s)	822, 978
BmsI	GCATC	1 cut(s)	979
BoxI	GACNNNNGTC	2 cut(s)	695, 960
BpiI	GAAGAC	1 cut(s)	965
BpmI	CTGGAG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	377
BsaAI	YACGTR	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	937
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 791
Bse118I	RCCGGY	2 cut(s)	494, 932
Bse1I	ACTGG	4 cut(s)	211, 240, 548, 971
Bse3DI	GCAATG	1 cut(s)	887
BseBI	CCWGG	2 cut(s)	822, 978
BseDI	CCNNGG	1 cut(s)	937
BseGI	GGATG	1 cut(s)	817
BseLI	CCNNNNNNNGG	2 cut(s)	140, 791
BseMI	GCAATG	1 cut(s)	887
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	4 cut(s)	211, 240, 548, 971
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	3 cut(s)	53, 347, 703
BseYI	CCCAGC	1 cut(s)	790
BshFI	GGCC	3 cut(s)	561, 629, 936
BshNI	GGYRCC	1 cut(s)	915
BsiHKAI	GWGCWC	1 cut(s)	985
BsiSI	CCGG	3 cut(s)	495, 558, 933
BslFI	GGGAC	3 cut(s)	295, 606, 927
BslI	CCNNNNNNNGG	2 cut(s)	140, 791
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	3 cut(s)	295, 606, 927
BsnI	GGCC	3 cut(s)	561, 629, 936
Bsp1286I	GDGCHC	2 cut(s)	918, 985
Bsp143I	GATC	3 cut(s)	3, 525, 616
BspANI	GGCC	3 cut(s)	561, 629, 936
BspCNI	CTCAG	1 cut(s)	580
BspLI	GGNNCC	3 cut(s)	750, 917, 943
BspMAI	CTGCAG	2 cut(s)	721, 962
BspPI	GGATC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	915
BsrDI	GCAATG	1 cut(s)	887
BsrFI	RCCGGY	2 cut(s)	494, 932
BsrI	ACTGG	4 cut(s)	211, 240, 548, 971
BssAI	RCCGGY	2 cut(s)	494, 932
BssECI	CCNNGG	1 cut(s)	937
BssMI	GATC	3 cut(s)	3, 525, 616
BssT1I	CCWWGG	1 cut(s)	937
Bst2UI	CCWGG	2 cut(s)	822, 978
Bst4CI	ACNGT	3 cut(s)	180, 408, 856
Bst6I	CTCTTC	1 cut(s)	833
BstBAI	YACGTR	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	934
BstDEI	CTNAG	3 cut(s)	290, 567, 902
BstF5I	GGATG	1 cut(s)	817
BstKTI	GATC	3 cut(s)	6, 528, 619
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	3 cut(s)	3, 525, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	898, 989
BstNI	CCWGG	2 cut(s)	822, 978
BstNSI	RCATGY	3 cut(s)	321, 332, 523
BstPAI	GACNNNNGTC	2 cut(s)	695, 960
BstSCI	CCNGG	2 cut(s)	820, 976
BstSFI	CTRYAG	2 cut(s)	717, 958
BstSLI	GKGCMC	1 cut(s)	918
BstSNI	TACGTA	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	53, 347, 703
BstV2I	GAAGAC	1 cut(s)	965
BstXI	CCANNNNNNTGG	1 cut(s)	952
BsuRI	GGCC	3 cut(s)	561, 629, 936
BtsCI	GGATG	1 cut(s)	817
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	5 cut(s)	404, 541, 785, 861, 964
Cac8I	GCNNGC	1 cut(s)	934
CaiI	CAGNNNCTG	1 cut(s)	966
Cfr10I	RCCGGY	2 cut(s)	494, 932
Cfr13I	GGNCC	1 cut(s)	941
Csp6I	GTAC	3 cut(s)	41, 181, 852
CviAII	CATG	7 cut(s)	62, 244, 318, 329, 520, 573, 622
CviQI	GTAC	3 cut(s)	41, 181, 852
DdeI	CTNAG	3 cut(s)	290, 567, 902
DpnI	GATC	3 cut(s)	5, 527, 618
DpnII	GATC	3 cut(s)	3, 525, 616
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	833
Eco105I	TACGTA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	937
Eco147I	AGGCCT	1 cut(s)	629
Eco47I	GGWCC	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	820, 976
EcoT14I	CCWWGG	1 cut(s)	937
EcoT22I	ATGCAT	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	937
FaeI	CATG	7 cut(s)	65, 247, 321, 332, 523, 576, 625
FaqI	GGGAC	3 cut(s)	295, 606, 927
FatI	CATG	7 cut(s)	61, 243, 317, 328, 519, 572, 621
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	166, 516
Fnu4HI	GCNGC	4 cut(s)	67, 336, 717, 1014
FokI	GGATG	1 cut(s)	804
Fsp4HI	GCNGC	4 cut(s)	67, 336, 717, 1014
FspBI	CTAG	2 cut(s)	798, 1024
GluI	GCNGC	4 cut(s)	67, 336, 717, 1014
GsaI	CCCAGC	1 cut(s)	794
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	561, 629, 936
HapII	CCGG	3 cut(s)	495, 558, 933
Hin1II	CATG	7 cut(s)	65, 247, 321, 332, 523, 576, 625
HinfI	GANTC	6 cut(s)	144, 225, 284, 482, 550, 668
HpaII	CCGG	3 cut(s)	495, 558, 933
HphI	GGTGA	2 cut(s)	523, 616
Hpy166II	GTNNAC	5 cut(s)	167, 442, 517, 549, 955
Hpy188I	TCNGA	1 cut(s)	570
Hpy188III	TCNNGA	1 cut(s)	986
Hpy8I	GTNNAC	5 cut(s)	167, 442, 517, 549, 955
HpyAV	CCTTC	3 cut(s)	227, 739, 930
HpyCH4III	ACNGT	3 cut(s)	180, 408, 856
HpyCH4IV	ACGT	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	898, 989
HpyF3I	CTNAG	3 cut(s)	290, 567, 902
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	7 cut(s)	65, 247, 321, 332, 523, 576, 625
KroI	GCCGGC	1 cut(s)	932
KroNI	GCCGGC	1 cut(s)	934
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 525, 616
LmnI	GCTCC	1 cut(s)	988
Lsp1109I	GCAGC	3 cut(s)	53, 347, 703
LweI	GCATC	1 cut(s)	979
MaeI	CTAG	2 cut(s)	798, 1024
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	212, 293, 962
MalI	GATC	3 cut(s)	5, 527, 618
MboI	GATC	3 cut(s)	3, 525, 616
MboII	GAAGA	3 cut(s)	520, 850, 965
MfeI	CAATTG	2 cut(s)	148, 831
MhlI	GDGCHC	2 cut(s)	918, 985
MluCI	AATT	8 cut(s)	10, 70, 148, 349, 831, 867, 924, 947
MlyI	GAGTC	3 cut(s)	278, 476, 544
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	4 cut(s)	251, 401, 619, 764
Mph1103I	ATGCAT	1 cut(s)	323
MroNI	GCCGGC	1 cut(s)	932
MseI	TTAA	3 cut(s)	9, 359, 644
MslI	CAYNNNNRTG	1 cut(s)	729
MspI	CCGG	3 cut(s)	495, 558, 933
MspR9I	CCNGG	2 cut(s)	822, 978
MunI	CAATTG	2 cut(s)	148, 831
MvaI	CCWGG	2 cut(s)	822, 978
MwoI	GCNNNNNNNGC	2 cut(s)	898, 989
NaeI	GCCGGC	1 cut(s)	934
NdeII	GATC	3 cut(s)	3, 525, 616
NgoMIV	GCCGGC	1 cut(s)	932
NlaIII	CATG	7 cut(s)	65, 247, 321, 332, 523, 576, 625
NlaIV	GGNNCC	3 cut(s)	750, 917, 943
NmuCI	GTSAC	2 cut(s)	212, 962
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	3 cut(s)	321, 332, 523
PceI	AGGCCT	1 cut(s)	629
PciI	ACATGT	2 cut(s)	328, 519
PdiI	GCCGGC	1 cut(s)	934
PfeI	GAWTC	3 cut(s)	144, 225, 668
PflMI	CCANNNNNTGG	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	820
PkrI	GCNGC	4 cut(s)	68, 337, 718, 1015
PleI	GAGTC	3 cut(s)	278, 476, 544
PpsI	GAGTC	3 cut(s)	278, 476, 544
Ppu21I	YACGTR	1 cut(s)	21
PscI	ACATGT	2 cut(s)	328, 519
PshAI	GACNNNNGTC	2 cut(s)	695, 960
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	820, 976
PspFI	CCCAGC	1 cut(s)	790
PspGI	CCWGG	2 cut(s)	820, 976
PspN4I	GGNNCC	3 cut(s)	750, 917, 943
PspPI	GGNCC	1 cut(s)	941
PstI	CTGCAG	2 cut(s)	721, 962
PstNI	CAGNNNCTG	1 cut(s)	966
RsaI	GTAC	3 cut(s)	42, 182, 853
RsaNI	GTAC	3 cut(s)	41, 181, 852
RseI	CAYNNNNRTG	1 cut(s)	729
SaqAI	TTAA	3 cut(s)	9, 359, 644
SatI	GCNGC	4 cut(s)	67, 336, 717, 1014
Sau3AI	GATC	3 cut(s)	3, 525, 616
Sau96I	GGNCC	1 cut(s)	941
ScaI	AGTACT	2 cut(s)	42, 182
SchI	GAGTC	3 cut(s)	278, 476, 544
ScrFI	CCNGG	2 cut(s)	822, 978
SduI	GDGCHC	2 cut(s)	918, 985
SfaNI	GCATC	1 cut(s)	979
SfcI	CTRYAG	2 cut(s)	717, 958
SinI	GGWCC	1 cut(s)	941
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SnaBI	TACGTA	1 cut(s)	21
Sse9I	AATT	8 cut(s)	10, 70, 148, 349, 831, 867, 924, 947
SseBI	AGGCCT	1 cut(s)	629
SspMI	CTAG	2 cut(s)	798, 1024
StuI	AGGCCT	1 cut(s)	629
StyD4I	CCNGG	2 cut(s)	820, 976
StyI	CCWWGG	1 cut(s)	937
TaaI	ACNGT	3 cut(s)	180, 408, 856
TaiI	ACGT	1 cut(s)	23
TasI	AATT	8 cut(s)	10, 70, 148, 349, 831, 867, 924, 947
TatI	WGTACW	3 cut(s)	40, 180, 851
TfiI	GAWTC	3 cut(s)	144, 225, 668
Tru1I	TTAA	3 cut(s)	9, 359, 644
Tru9I	TTAA	3 cut(s)	9, 359, 644
TscAI	CASTG	5 cut(s)	411, 548, 792, 861, 971
TseFI	GTSAC	2 cut(s)	212, 962
TseI	GCWGC	4 cut(s)	66, 335, 716, 1013
Tsp45I	GTSAC	2 cut(s)	212, 962
TspDTI	ATGAA	8 cut(s)	62, 117, 127, 232, 424, 468, 713, 1014
TspRI	CASTG	5 cut(s)	411, 548, 792, 861, 971
Van91I	CCANNNNNTGG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	941
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	1 cut(s)	947
XceI	RCATGY	3 cut(s)	321, 332, 523
XmiI	GTMKAC	2 cut(s)	166, 516
XspI	CTAG	2 cut(s)	798, 1024
ZrmI	AGTACT	2 cut(s)	42, 182
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.