AT2G34070

Protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
14387194 .. 14390339
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34070.1

Sequence Viewer

Length: 1158 bp
ATGGGTTTCAAACTCAACTCTCTTTTCCTTCTTCTTTCGCTTCTCATACTCACAATCTTGTCCGGAGCCGACCAAGCCTTGGCTTACGTCAAGAAACCACATGTGAGCCAACGCAACAAAACGGCGTTAGCAGCCGTCGCCGGAAGAGGAGGAGGAAAAGAGATGTTGAAAGGGAGGAAGCAGACGAGTGGTTGTAACTTGTTTCAAGGGAGATGGGTTTTCGATGCTTCTTACCCTTTCTACGATTCATCCACGTGCCCTTTCATCGACGGTGAGTTCGACTGTCTCAAATTCGGCCGACCAGACAAACAGTTCCTTAAGTACTCTTGGCAGCCTGATTCATGCACCGTCCCAAGGTTTGATGGGGAAGCGTTTTTGAAGAAATGGAGAGGGAAACGAGTGATGTTCGTGGGTGACTCACTGAGTCTAAACATGTGGGAATCGTTGGCATGTATGATACATTCGTCGGTTCCAAACACTAAGACCACTTTTCTCAAGCGAACCCCACTCTCCTCTCTCACTTTCCAGGAATATGACGTCACACTATTCCTATACCGAACACCATACCTAGTGGACATCTCCAAAGAAAGTGTCGGGCGTGTGCTTAACCTTGGAGCCATTGAAGATGGAGCTGATGCTTGGAAAAATATGGACCTCCTCGTCTTCAATTCTTGGCACTGGTGGACTCACACAGGAGTACAGTCTCAAGGGTGGGATTTTATAAGAGATGGGTCTTCACTGATGAGAGACATGGACCGCCTTGATGCTTTCAACAAAGGACTCACCACTTGGGGTCAATGGGTTGATCAAAATGTTAATGTTTCGCAAACCCGAGTCTTCTTCCAAGGCATTTCTCCCACTCACTACATGGGAAGGGAATGGAACGAGCCGAGGAAAACTTGCAACGGGCAGATGCAACCGTTGACCGGATCAACATACCCAGGTGGTTCACTTCCTGCAGCAAGCATTGTGTCTCGAGTATTAAGCACGATGAGAACGCCCGTTTACTTACTCGACATCACAACTCTATCTCAACTGAGAAAAGATGCTCATCCATCTACATATGGAGGCGATGGCGGAACGGATTGCAGTCACTGGTGCCTTCCTGGCTTGCCGGATACTTGGAACCAGCTTCTCTATGCAGCTCTTTCGATGTGA

Protein Analysis

385

Amino Acids

43.35

Weight (kDa)

8.8

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 64 - 115 1.8e-22 PMR5 N terminal Domain
PC-Esterase PF13839 117 - 381 2.5e-94 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 722
AasI GACNNNNNNGTC 1 cut(s) 659
AatII GACGTC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 1098
AccB7I CCANNNNNTGG 1 cut(s) 79
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 2 cut(s) 757, 1077
AclWI GGATC 1 cut(s) 937
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 290
AcvI CACGTG 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 2 cut(s) 323, 699
AfiI CCNNNNNNNGG 3 cut(s) 79, 354, 926
AflII CTTAAG 1 cut(s) 317
AflIII ACRYGT 2 cut(s) 100, 432
AgsI TTSAA 7 cut(s) 10, 169, 206, 379, 623, 667, 772
AjnI CCWGG 3 cut(s) 525, 940, 1105
AluBI AGCT 3 cut(s) 632, 1132, 1145
AluI AGCT 3 cut(s) 632, 1132, 1145
Alw26I GTCTC 4 cut(s) 290, 708, 741, 978
AlwI GGATC 1 cut(s) 937
AlwNI CAGNNNCTG 1 cut(s) 1095
Ama87I CYCGRG 2 cut(s) 831, 975
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 1 cut(s) 295
ApeKI GCWGC 4 cut(s) 131, 331, 959, 1142
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 4 cut(s) 260, 292, 576, 608
AspS9I GGNCC 2 cut(s) 652, 754
AsuHPI GGTGA 3 cut(s) 284, 425, 775
AvaI CYCGRG 2 cut(s) 831, 975
AvaII GGWCC 2 cut(s) 652, 754
BaeGI GKGCMC 1 cut(s) 260
BaeI ACNNNNGTAYC 2 cut(s) 449, 482
BanI GGYRCC 1 cut(s) 1098
BbrPI CACGTG 1 cut(s) 255
BbsI GAAGAC 3 cut(s) 655, 726, 829
BbvI GCAGC 4 cut(s) 143, 343, 971, 1154
BccI CCATC 6 cut(s) 207, 356, 620, 722, 1063, 1067
BceAI ACGGC 2 cut(s) 119, 138
BcgI CGANNNNNNTGC 1 cut(s) 1131
BciT130I CCWGG 3 cut(s) 527, 942, 1107
BciVI GTATCC 1 cut(s) 1111
BclI TGATCA 1 cut(s) 805
BcoDI GTCTC 4 cut(s) 290, 708, 741, 978
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 957
BfrI CTTAAG 1 cut(s) 317
BfuI GTATCC 1 cut(s) 1111
BglI GCCNNNNNGGC 1 cut(s) 1107
BisI GCNGC 4 cut(s) 132, 332, 960, 1143
BlsI GCNGC 4 cut(s) 133, 333, 961, 1144
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 3 cut(s) 527, 942, 1107
Bme18I GGWCC 2 cut(s) 652, 754
BmeT110I CYCGRG 2 cut(s) 831, 975
BmgT120I GGNCC 2 cut(s) 652, 754
BmiI GGNNCC 5 cut(s) 67, 471, 616, 1100, 1127
BmrFI CCNGG 3 cut(s) 527, 942, 1107
BmsI GCATC 5 cut(s) 214, 625, 754, 903, 1036
BpiI GAAGAC 3 cut(s) 655, 726, 829
BpuEI CTTGAG 2 cut(s) 479, 690
BsaAI YACGTR 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 1050
BsaHI GRCGYC 1 cut(s) 537
BsaJI CCNNGG 6 cut(s) 78, 353, 610, 844, 890, 940
BsaWI WCCGGW 2 cut(s) 62, 926
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 354, 926
Bse1I ACTGG 2 cut(s) 683, 1100
Bse8I GATNNNNATC 1 cut(s) 1050
BseAI TCCGGA 1 cut(s) 62
BseBI CCWGG 3 cut(s) 527, 942, 1107
BseDI CCNNGG 6 cut(s) 78, 353, 610, 844, 890, 940
BseGI GGATG 2 cut(s) 248, 1051
BseJI GATNNNNATC 1 cut(s) 1050
BseLI CCNNNNNNNGG 3 cut(s) 79, 354, 926
BseMII CTCAG 2 cut(s) 413, 1028
BseNI ACTGG 2 cut(s) 683, 1100
BseRI GAGGAG 4 cut(s) 162, 165, 502, 647
BseSI GKGCMC 1 cut(s) 260
BseX3I CGGCCG 1 cut(s) 295
BseXI GCAGC 4 cut(s) 143, 343, 971, 1154
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 1098
BsiEI CGRYCG 1 cut(s) 298
BsiHKCI CYCGRG 2 cut(s) 831, 975
BsiSI CCGG 4 cut(s) 63, 141, 927, 1115
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 3 cut(s) 79, 354, 926
BsmAI GTCTC 4 cut(s) 290, 708, 741, 978
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 297
BsoBI CYCGRG 2 cut(s) 831, 975
Bsp1286I GDGCHC 1 cut(s) 260
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 2 cut(s) 805, 929
BspACI CCGC 2 cut(s) 757, 1077
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 414, 1029
BspEI TCCGGA 1 cut(s) 62
BspLI GGNNCC 5 cut(s) 67, 471, 616, 1100, 1127
BspMAI CTGCAG 1 cut(s) 961
BspPI GGATC 1 cut(s) 937
BspT107I GGYRCC 1 cut(s) 1098
BspTI CTTAAG 1 cut(s) 317
BsrI ACTGG 2 cut(s) 683, 1100
BssECI CCNNGG 6 cut(s) 78, 353, 610, 844, 890, 940
BssMI GATC 2 cut(s) 805, 929
BssNI GRCGYC 1 cut(s) 537
BssT1I CCWWGG 4 cut(s) 78, 353, 610, 844
Bst2UI CCWGG 3 cut(s) 527, 942, 1107
Bst4CI ACNGT 6 cut(s) 272, 284, 312, 349, 702, 921
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 537
BstAFI CTTAAG 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 964, 1112
BstDEI CTNAG 3 cut(s) 422, 480, 1037
BstF5I GGATG 2 cut(s) 248, 1051
BstKTI GATC 2 cut(s) 808, 932
BstMAI GTCTC 4 cut(s) 290, 708, 741, 978
BstMBI GATC 2 cut(s) 805, 929
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 4 cut(s) 74, 131, 137, 1107
BstNI CCWGG 3 cut(s) 527, 942, 1107
BstNSI RCATGY 3 cut(s) 104, 436, 453
BstSCI CCNGG 3 cut(s) 525, 940, 1105
BstSFI CTRYAG 1 cut(s) 957
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 4 cut(s) 143, 343, 971, 1154
BstV2I GAAGAC 3 cut(s) 655, 726, 829
BstZI CGGCCG 1 cut(s) 295
BsuI GTATCC 1 cut(s) 1111
BsuRI GGCC 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 1086
BtsCI GGATG 2 cut(s) 248, 1051
BtsIMutI CAGTG 4 cut(s) 419, 676, 737, 1093
Cac8I GCNNGC 2 cut(s) 964, 1112
CaiI CAGNNNCTG 1 cut(s) 1095
Cfr13I GGNCC 2 cut(s) 652, 754
Csp6I GTAC 2 cut(s) 322, 698
CviAII CATG 6 cut(s) 101, 342, 433, 450, 751, 868
CviQI GTAC 2 cut(s) 322, 698
DdeI CTNAG 3 cut(s) 422, 480, 1037
DpnI GATC 2 cut(s) 807, 931
DpnII GATC 2 cut(s) 805, 929
DrdI GACNNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 1 cut(s) 659
EaeI YGGCCR 1 cut(s) 295
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 1 cut(s) 1092
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 4 cut(s) 78, 353, 610, 844
Eco47I GGWCC 2 cut(s) 652, 754
Eco52I CGGCCG 1 cut(s) 295
Eco72I CACGTG 1 cut(s) 255
Eco88I CYCGRG 2 cut(s) 831, 975
EcoRII CCWGG 3 cut(s) 525, 940, 1105
EcoT14I CCWWGG 4 cut(s) 78, 353, 610, 844
ErhI CCWWGG 4 cut(s) 78, 353, 610, 844
FaeI CATG 6 cut(s) 104, 345, 436, 453, 754, 871
FaqI GGGAC 1 cut(s) 335
FatI CATG 6 cut(s) 100, 341, 432, 449, 750, 867
FauNDI CATATG 1 cut(s) 1063
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 4 cut(s) 132, 332, 960, 1143
FokI GGATG 2 cut(s) 235, 1038
Fsp4HI GCNGC 4 cut(s) 132, 332, 960, 1143
FspBI CTAG 1 cut(s) 569
GluI GCNGC 4 cut(s) 132, 332, 960, 1143
HaeIII GGCC 1 cut(s) 297
HapII CCGG 4 cut(s) 63, 141, 927, 1115
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 6 cut(s) 104, 345, 436, 453, 754, 871
HincII GTYRAC 1 cut(s) 924
HindII GTYRAC 1 cut(s) 924
HinfI GANTC 8 cut(s) 245, 338, 416, 424, 440, 685, 780, 834
HpaII CCGG 4 cut(s) 63, 141, 927, 1115
HphI GGTGA 3 cut(s) 284, 425, 775
Hpy166II GTNNAC 5 cut(s) 574, 684, 924, 950, 1006
Hpy188III TCNNGA 3 cut(s) 63, 91, 975
Hpy8I GTNNAC 5 cut(s) 574, 684, 924, 950, 1006
Hpy99I CGWCG 3 cut(s) 140, 272, 469
HpyAV CCTTC 3 cut(s) 38, 867, 1112
HpyCH4III ACNGT 6 cut(s) 272, 284, 312, 349, 702, 921
HpyCH4IV ACGT 3 cut(s) 87, 254, 537
HpyCH4V TGCA 6 cut(s) 345, 903, 916, 959, 1089, 1142
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 131, 137, 1107
HpyF3I CTNAG 3 cut(s) 422, 480, 1037
HpySE526I ACGT 3 cut(s) 87, 254, 537
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 6 cut(s) 104, 345, 436, 453, 754, 871
Kpn2I TCCGGA 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 2 cut(s) 805, 929
LmnI GCTCC 3 cut(s) 65, 614, 629
Lsp1109I GCAGC 4 cut(s) 143, 343, 971, 1154
LweI GCATC 5 cut(s) 214, 625, 754, 903, 1036
MaeI CTAG 1 cut(s) 569
MaeII ACGT 3 cut(s) 87, 254, 537
MaeIII GTNAC 4 cut(s) 194, 413, 538, 1091
MalI GATC 2 cut(s) 807, 931
MboI GATC 2 cut(s) 805, 929
MboII GAAGA 8 cut(s) 23, 156, 391, 635, 655, 726, 829, 832
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 2 cut(s) 290, 667
MlyI GAGTC 5 cut(s) 410, 433, 679, 774, 843
MroI TCCGGA 1 cut(s) 62
MseI TTAA 4 cut(s) 318, 606, 816, 983
MslI CAYNNNNRTG 1 cut(s) 253
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 4 cut(s) 63, 141, 927, 1115
MspR9I CCNGG 3 cut(s) 527, 942, 1107
MvaI CCWGG 3 cut(s) 527, 942, 1107
MwoI GCNNNNNNNGC 4 cut(s) 74, 131, 137, 1107
NdeI CATATG 1 cut(s) 1063
NdeII GATC 2 cut(s) 805, 929
NlaIII CATG 6 cut(s) 104, 345, 436, 453, 754, 871
NlaIV GGNNCC 5 cut(s) 67, 471, 616, 1100, 1127
NmeAIII GCCGAG 1 cut(s) 915
NmuCI GTSAC 3 cut(s) 413, 538, 1091
NspI RCATGY 3 cut(s) 104, 436, 453
PaeR7I CTCGAG 1 cut(s) 975
PciI ACATGT 2 cut(s) 100, 432
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 3 cut(s) 245, 338, 440
PflMI CCANNNNNTGG 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 4 cut(s) 133, 333, 961, 1144
PleI GAGTC 5 cut(s) 410, 432, 679, 774, 842
PmaCI CACGTG 1 cut(s) 255
PmlI CACGTG 1 cut(s) 255
PpsI GAGTC 5 cut(s) 410, 432, 679, 774, 842
Ppu21I YACGTR 1 cut(s) 255
PscI ACATGT 2 cut(s) 100, 432
PsiI TTATAA 1 cut(s) 722
Psp6I CCWGG 3 cut(s) 525, 940, 1105
PspCI CACGTG 1 cut(s) 255
PspGI CCWGG 3 cut(s) 525, 940, 1105
PspN4I GGNNCC 5 cut(s) 67, 471, 616, 1100, 1127
PspPI GGNCC 2 cut(s) 652, 754
PstI CTGCAG 1 cut(s) 961
PstNI CAGNNNCTG 1 cut(s) 1095
RsaI GTAC 2 cut(s) 323, 699
RsaNI GTAC 2 cut(s) 322, 698
RseI CAYNNNNRTG 1 cut(s) 253
SaqAI TTAA 4 cut(s) 318, 606, 816, 983
SatI GCNGC 4 cut(s) 132, 332, 960, 1143
Sau3AI GATC 2 cut(s) 805, 929
Sau96I GGNCC 2 cut(s) 652, 754
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 5 cut(s) 410, 433, 679, 774, 843
ScrFI CCNGG 3 cut(s) 527, 942, 1107
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 5 cut(s) 214, 625, 754, 903, 1036
SfcI CTRYAG 1 cut(s) 957
Sfr274I CTCGAG 1 cut(s) 975
SinI GGWCC 2 cut(s) 652, 754
SlaI CTCGAG 1 cut(s) 975
SmiMI CAYNNNNRTG 1 cut(s) 253
SmlI CTYRAG 4 cut(s) 317, 494, 705, 975
SmoI CTYRAG 4 cut(s) 317, 494, 705, 975
Sse9I AATT 2 cut(s) 290, 667
SsiI CCGC 2 cut(s) 757, 1077
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 3 cut(s) 525, 940, 1105
StyI CCWWGG 4 cut(s) 78, 353, 610, 844
TaaI ACNGT 6 cut(s) 272, 284, 312, 349, 702, 921
TaiI ACGT 3 cut(s) 90, 257, 540
TaqI TCGA 6 cut(s) 222, 267, 279, 976, 1014, 1151
TasI AATT 2 cut(s) 290, 667
TatI WGTACW 2 cut(s) 321, 697
TfiI GAWTC 3 cut(s) 245, 338, 440
Tru1I TTAA 4 cut(s) 318, 606, 816, 983
Tru9I TTAA 4 cut(s) 318, 606, 816, 983
TscAI CASTG 4 cut(s) 426, 683, 744, 1100
TseFI GTSAC 3 cut(s) 413, 538, 1091
TseI GCWGC 4 cut(s) 131, 331, 959, 1142
Tsp45I GTSAC 3 cut(s) 413, 538, 1091
TspDTI ATGAA 3 cut(s) 237, 253, 330
TspGWI ACGGA 1 cut(s) 1097
TspRI CASTG 4 cut(s) 426, 683, 744, 1100
Van91I CCANNNNNTGG 1 cut(s) 79
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 652, 754
XapI RAATTY 1 cut(s) 290
XceI RCATGY 3 cut(s) 104, 436, 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XhoI CTCGAG 1 cut(s) 975
XspI CTAG 1 cut(s) 569
ZraI GACGTC 1 cut(s) 538
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.