AT1G29070

ribosomal protein L34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008821
Physical Location & Seq
Forward (+)
10149791 .. 10151407
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29070.1

Sequence Viewer

Length: 474 bp
ATGGCTTCCTTATCCACTTCCGTTGTAGCTTCGGCTTCGTCGCGTTTATGGAATCCTGCTGCCTCCAACGGCAAGATTTGCGTTCCTTCTGCTTCGCTTTCTCTGCGTACGGGTTGTAGACGGAGTTCGTCCTCTCTCACTTCTTCCGCTTCTTCGCAATTGCTTCATTGCTCGTTTCTCTCGTCGCCTGTTTCCCTAGCGTCTCCATTTTCTGGTTTGTCCATTGCGTTTGATCTCAGCAGTCAAACTAGTGGACTGAATGGCCAGAGACGCAGAGGCCTTGTGGTTAGAGCTGGAAAAGCTGCTCTGTGTCAAACTAAGAGAAGCAGATCAAGAAAATCTCTAGCTAGGACTCATGGTTTCCGTAGAAGGATGAGGACCACTAGCGGTAGAGCAACCATAAAGCGTCGACGTGCCAAGGGACGTTGGAACCTCTGTCCCAAGTCCAACCCTAGCAGCGGCAAACGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L34

Protein Analysis

157

Amino Acids

16.74

Weight (kDa)

12.0

Isoelectric Point (pI)

82.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L34 PF00468 115 - 146 4.5e-11 Ribosomal protein L34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 212
AccI GTMKAC 2 cut(s) 118, 409
AccII CGCG 1 cut(s) 43
AciI CCGC 3 cut(s) 147, 387, 459
AcoI YGGCCR 1 cut(s) 262
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 212, 458
AhlI ACTAGT 1 cut(s) 248
AjiI CACGTC 1 cut(s) 413
AluBI AGCT 4 cut(s) 29, 293, 302, 347
AluI AGCT 4 cut(s) 29, 293, 302, 347
Alw26I GTCTC 2 cut(s) 207, 262
AoxI GGCC 2 cut(s) 262, 277
ApeKI GCWGC 3 cut(s) 59, 302, 456
AspS9I GGNCC 1 cut(s) 378
AvaII GGWCC 1 cut(s) 378
BalI TGGCCA 1 cut(s) 264
BbvI GCAGC 3 cut(s) 46, 289, 468
BceAI ACGGC 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 207, 262
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 6 cut(s) 197, 249, 344, 348, 384, 453
BisI GCNGC 4 cut(s) 60, 303, 457, 460
BlsI GCNGC 4 cut(s) 61, 304, 458, 461
Bme18I GGWCC 1 cut(s) 378
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 458
Bse3DI GCAATG 2 cut(s) 166, 222
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 212, 458
BseMI GCAATG 2 cut(s) 166, 222
BseMII CTCAG 1 cut(s) 250
BseXI GCAGC 3 cut(s) 46, 289, 468
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 264, 279
BsiWI CGTACG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 423, 435
BslI CCNNNNNNNGG 2 cut(s) 212, 458
BsmAI GTCTC 2 cut(s) 207, 262
BsmBI CGTCTC 2 cut(s) 207, 262
BsmFI GGGAC 2 cut(s) 423, 435
BsnI GGCC 2 cut(s) 264, 279
Bsp143I GATC 2 cut(s) 232, 329
BspACI CCGC 3 cut(s) 147, 387, 459
BspANI GGCC 2 cut(s) 264, 279
BspCNI CTCAG 1 cut(s) 249
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 431
BsrDI GCAATG 2 cut(s) 166, 222
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 2 cut(s) 232, 329
BssT1I CCWWGG 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 236, 318
BstF5I GGATG 1 cut(s) 378
BstFNI CGCG 1 cut(s) 43
BstKTI GATC 2 cut(s) 235, 332
BstMAI GTCTC 2 cut(s) 207, 262
BstMBI GATC 2 cut(s) 232, 329
BstMWI GCNNNNNNNGC 4 cut(s) 78, 103, 270, 299
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 3 cut(s) 46, 289, 468
BsuRI GGCC 2 cut(s) 264, 279
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 3 cut(s) 189, 279, 395
Csp6I GTAC 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 1 cut(s) 356
CviJI RGCY 9 cut(s) 5, 29, 35, 264, 279, 293, 302, 347, 470
CviKI_1 RGCY 9 cut(s) 5, 29, 35, 264, 279, 293, 302, 347, 470
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 2 cut(s) 236, 318
DpnI GATC 2 cut(s) 234, 331
DpnII GATC 2 cut(s) 232, 329
EaeI YGGCCR 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 417
Eco147I AGGCCT 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 2 cut(s) 207, 262
FaeI CATG 1 cut(s) 359
FaiI YATR 3 cut(s) 49, 357, 401
FaqI GGGAC 2 cut(s) 423, 435
FatI CATG 1 cut(s) 355
FblI GTMKAC 2 cut(s) 118, 409
Fnu4HI GCNGC 4 cut(s) 60, 303, 457, 460
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 4 cut(s) 60, 303, 457, 460
FspBI CTAG 6 cut(s) 197, 249, 344, 348, 384, 453
GluI GCNGC 4 cut(s) 60, 303, 457, 460
HaeIII GGCC 2 cut(s) 264, 279
HgaI GACGC 3 cut(s) 189, 279, 395
Hin1II CATG 1 cut(s) 359
HincII GTYRAC 1 cut(s) 410
HindII GTYRAC 1 cut(s) 410
HinfI GANTC 2 cut(s) 52, 352
Hpy166II GTNNAC 3 cut(s) 119, 254, 410
Hpy188III TCNNGA 1 cut(s) 333
Hpy8I GTNNAC 3 cut(s) 119, 254, 410
Hpy99I CGWCG 4 cut(s) 43, 187, 411, 414
HpyAV CCTTC 2 cut(s) 96, 363
HpyCH4IV ACGT 2 cut(s) 412, 424
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 103, 270, 299
HpyF3I CTNAG 2 cut(s) 236, 318
HpySE526I ACGT 2 cut(s) 412, 424
Hsp92II CATG 1 cut(s) 359
Kzo9I GATC 2 cut(s) 232, 329
LpnPI CCDG 5 cut(s) 69, 198, 201, 278, 279
Lsp1109I GCAGC 3 cut(s) 46, 289, 468
MaeI CTAG 6 cut(s) 197, 249, 344, 348, 384, 453
MaeII ACGT 2 cut(s) 412, 424
MalI GATC 2 cut(s) 234, 331
MboI GATC 2 cut(s) 232, 329
MboII GAAGA 2 cut(s) 135, 144
MfeI CAATTG 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 3 cut(s) 90, 407, 471
MnlI CCTC 5 cut(s) 73, 142, 269, 369, 443
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 459
MunI CAATTG 1 cut(s) 158
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 4 cut(s) 78, 103, 270, 299
NdeII GATC 2 cut(s) 232, 329
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 431
PceI AGGCCT 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PfeI GAWTC 1 cut(s) 52
Pfl23II CGTACG 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 4 cut(s) 61, 304, 458, 461
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PspLI CGTACG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 431
PspPI GGNCC 1 cut(s) 378
PsrI GAACNNNNNNTAC 2 cut(s) 109, 141
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SalI GTCGAC 1 cut(s) 408
SatI GCNGC 4 cut(s) 60, 303, 457, 460
Sau3AI GATC 2 cut(s) 232, 329
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 1 cut(s) 346
SetI ASST 7 cut(s) 31, 295, 304, 349, 415, 427, 435
SgrDI CGTCGACG 1 cut(s) 408
SinI GGWCC 1 cut(s) 378
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 1 cut(s) 158
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 3 cut(s) 147, 387, 459
SspMI CTAG 6 cut(s) 197, 249, 344, 348, 384, 453
StuI AGGCCT 1 cut(s) 279
StyI CCWWGG 1 cut(s) 417
TaiI ACGT 2 cut(s) 415, 427
TaqI TCGA 1 cut(s) 409
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 1 cut(s) 52
TseI GCWGC 3 cut(s) 59, 302, 456
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 3 cut(s) 10, 136, 353
Van91I CCANNNNNTGG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 378
XmiI GTMKAC 2 cut(s) 118, 409
XspI CTAG 6 cut(s) 197, 249, 344, 348, 384, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.