Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008821

Physical Location & Seq

Genomic Coordinates Reverse (-)

3135045 .. 3137154

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1042600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGATTTTTTTGGTGTTTCCCGGTCTCTCTCTCTTCTCTCCTTCATTTTCTTTTTCCCTCTCCCGTAACTCTCTCTCCCTCACTCTCTCGGCCCTCTCTATCTCAACCCCTCCGAGAGTTTTCTTACCAACAGACATCACCATCATCTTTATCTCGTTGCTACGAACTCAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

59

Amino Acids

6.39

Weight (kDa)

11.7

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29070
fragaria_vesca	FvH4_3g07980
malus_domestica	MD05G1303200.v1.1 MD08G1042600.v1.1 MD10G1067400.v1.1 MD10G1282300.v1.1 MD16G1032000.v1.1 MD16G1032400.v1.1
prunus_persica	Prupe.4G059500_v2.0.a1
pyrus_communis	pycom05g28030 pycom10g23550
rosa_chinensis	RchiOBHm_Chr5g0010351
rosa_laevigata	RLG00000031741 RLG00000031750
rosa_multiflora	Rmu_sc0007816.1_g000004 Rmu_sc0009313.1_g000022
rosa_roxburghii	Rroxscaffold_1G00065910
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081600 Rh5BG076400 Rh5CG089700 Rh5DG077100
rosa_wichuraiana	Rw5G007550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	130
BccI	CCATC	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
BshFI	GGCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	91
CviJI	RGCY	1 cut(s)	92
CviKI_1	RGCY	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	29
FaiI	YATR	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	21
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	51
LpnPI	CCDG	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	65
MboII	GAAGA	1 cut(s)	25
MnlI	CCTC	4 cut(s)	68, 89, 104, 120
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	21
NciI	CCSGG	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	21
SgeI	CNNG	6 cut(s)	32, 33, 75, 100, 126, 166
StyD4I	CCNGG	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.