FvH4_3g07980

ribosomal protein L34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008821
Physical Location & Seq
Reverse (-)
4699171 .. 4700451
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07980.t1

Sequence Viewer

Length: 453 bp
ATGGCTACTCTCTCAGCAATTTCATGGTCACCTTCTCTTTCGACTAGACCCACTACTACTTCTGCTTCCCTCACATTCCTCACCGGAAGAAGAACCTCCGTCTCCCTCAACGTTGCCGCCTCGCGTTCTTCTCTGCTTCACTGCTCCTTCATCCCCTCCTCCTCAGCTTCTCTCTCCTCCCCTTCGTCCTTTTCAGGTTTATCTTTGGGTTTGGATTTGAGCTCTAATATTGGGGTTGGAAGAAGGAGAGGCTCTGGCTTAGTGGTGAGGGCTGGGAAGGCTGCCCTGTGTCTAACCAAGAGAAACAAGTCCCGGAAATCTCTGGCTCGAACTCATGGCTTCCGCAGACGCATGAGAACCACTAGCGGTAGAGCAATGTTGAAGCGCCGACGTGCCAAGGGGCGGAAGGTCCTCTGCACCAAGACCAATCCCAACAGTGGAAAACGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L34

Protein Analysis

151

Amino Acids

15.98

Weight (kDa)

12.0

Isoelectric Point (pI)

70.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L34 PF00468 108 - 139 1.1e-10 Ribosomal protein L34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AciI CCGC 4 cut(s) 117, 343, 366, 403
AclI AACGTT 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 402, 437
AgsI TTSAA 1 cut(s) 382
AjiI CACGTC 1 cut(s) 392
AluBI AGCT 2 cut(s) 167, 222
AluI AGCT 2 cut(s) 167, 222
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 21, 73, 277
AvaII GGWCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 224
BbvCI CCTCAGC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 45, 363
BfoI RGCGCY 1 cut(s) 388
BisI GCNGC 2 cut(s) 117, 282
BlsI GCNGC 2 cut(s) 118, 283
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 409
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 313
Bpu10I CCTNAGC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 437
Bse3DI GCAATG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 402, 437
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 27, 177
BseRI GAGGAG 3 cut(s) 148, 151, 166
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 84, 313
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 402, 437
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 224
BspACI CCGC 4 cut(s) 117, 343, 366, 403
BspCNI CTCAG 2 cut(s) 26, 176
BspFNI CGCG 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 437
BstDEI CTNAG 3 cut(s) 13, 163, 259
BstEII GGTNACC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 311
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 268
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 139, 442
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 1 cut(s) 357
CviAII CATG 3 cut(s) 24, 335, 352
CviJI RGCY 9 cut(s) 5, 167, 222, 252, 258, 272, 281, 326, 339
CviKI_1 RGCY 9 cut(s) 5, 167, 222, 252, 258, 272, 281, 326, 339
DdeI CTNAG 3 cut(s) 13, 163, 259
EciI GGCGGA 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 3 cut(s) 27, 338, 355
FaiI YATR 3 cut(s) 25, 336, 353
FaqI GGGAC 1 cut(s) 295
FatI CATG 3 cut(s) 23, 334, 351
Fnu4HI GCNGC 2 cut(s) 117, 282
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 117, 282
FspBI CTAG 2 cut(s) 45, 363
GlaI GCGC 1 cut(s) 386
GluI GCNGC 2 cut(s) 117, 282
GsaI CCCAGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 388
HapII CCGG 2 cut(s) 84, 313
HgaI GACGC 1 cut(s) 357
HhaI GCGC 1 cut(s) 387
Hin1II CATG 3 cut(s) 27, 338, 355
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HpaII CCGG 2 cut(s) 84, 313
HphI GGTGA 3 cut(s) 21, 73, 277
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 6 cut(s) 42, 157, 192, 237, 271, 400
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 3 cut(s) 111, 391, 445
HpyCH4V TGCA 1 cut(s) 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 3 cut(s) 13, 163, 259
HpySE526I ACGT 3 cut(s) 111, 391, 445
Hsp92II CATG 3 cut(s) 27, 338, 355
HspAI GCGC 1 cut(s) 385
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 7 cut(s) 97, 180, 240, 258, 299, 308, 326
Lsp1109I GCAGC 1 cut(s) 268
MaeI CTAG 2 cut(s) 45, 363
MaeII ACGT 3 cut(s) 111, 391, 445
MaeIII GTNAC 1 cut(s) 27
MboII GAAGA 4 cut(s) 99, 102, 120, 252
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 217
MspI CCGG 2 cut(s) 84, 313
MspR9I CCNGG 1 cut(s) 313
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 313
NlaIII CATG 3 cut(s) 27, 338, 355
NmuCI GTSAC 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 2 cut(s) 118, 283
PpuMI RGGWCCY 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 224
Psp1406I AACGTT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 409
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 409
PspPPI RGGWCCY 1 cut(s) 409
SacI GAGCTC 1 cut(s) 224
SatI GCNGC 2 cut(s) 117, 282
Sau96I GGNCC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 1 cut(s) 224
SetI ASST 9 cut(s) 34, 98, 114, 169, 199, 224, 394, 411, 448
SinI GGWCC 1 cut(s) 409
Sse9I AATT 1 cut(s) 18
SsiI CCGC 4 cut(s) 117, 343, 366, 403
SspI AATATT 1 cut(s) 229
SspMI CTAG 2 cut(s) 45, 363
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 3 cut(s) 114, 394, 448
TaqI TCGA 2 cut(s) 41, 328
TasI AATT 1 cut(s) 18
TauI GCSGC 1 cut(s) 119
TscAI CASTG 2 cut(s) 146, 442
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 12, 139
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 2 cut(s) 146, 442
VpaK11BI GGWCC 1 cut(s) 409
XspI CTAG 2 cut(s) 45, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.