pycom05g28030

ribosomal protein L34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0008821
Physical Location & Seq
Reverse (-)
28861905 .. 28862981
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28030.1

Sequence Viewer

Length: 459 bp
ATGGCTTCAGTTTCAGCAGTGGCGTGGTCGCCGTACCTTTCCACTCGAGCCTCCACACCCTGTGCTTCTCTCACATTCCTCACCGGCTCCACAACTAGGAAGAGCTCCGTGTCTCTCAGCGGTGGCGCCGCCGCGCGTTCCCCGTTGCTTCACTGCTCCTTCATCTCTTCCTCCTCTATCGCTTCCACTTCCGCCTTCTCAGGTTTATCTTTGGGTTTGGATTTGAGCTCTAGTGTTGGGGTTGGAAGAAGAAGAGGCTGTGGCTTAGTGGTGAGGGCCGGGAAGGCTGCCCTGTGTCTAACCAAGAGAAGTAGGTCCAGGAAATCCTTGGCTCGAACTCATGGATTCCGTAGGCGCATGAGAACAACTGGCGGGAGAGCAATGATGAAGCGCCGACGTGCTAAGGGGCGGAAGGTCCTCTGCACGAAGAGCAATCCCAGCAGTGGAAAACGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L34

Protein Analysis

153

Amino Acids

15.93

Weight (kDa)

12.0

Isoelectric Point (pI)

65.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L34 PF00468 111 - 141 1.8e-09 Ribosomal protein L34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccII CGCG 2 cut(s) 134, 136
AciI CCGC 6 cut(s) 120, 129, 132, 192, 372, 409
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 62
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 96, 443
AjiI CACGTC 1 cut(s) 398
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 2 cut(s) 105, 228
AluI AGCT 2 cut(s) 105, 228
Alw21I GWGCWC 2 cut(s) 107, 230
Alw26I GTCTC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 287
AspLEI GCGC 4 cut(s) 128, 136, 357, 393
AspS9I GGNCC 3 cut(s) 276, 315, 415
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 73, 283
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 2 cut(s) 315, 415
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 107, 230
Bbv12I GWGCWC 2 cut(s) 107, 230
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 319
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 2 cut(s) 96, 231
BfoI RGCGCY 2 cut(s) 129, 394
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 3 cut(s) 129, 132, 288
BlsI GCNGC 3 cut(s) 130, 133, 289
Bme1390I CCNGG 2 cut(s) 280, 319
Bme18I GGWCC 2 cut(s) 315, 415
BmeT110I CYCGRG 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 398
BmgT120I GGNCC 3 cut(s) 276, 315, 415
BmiI GGNNCC 2 cut(s) 88, 127
BmrFI CCNGG 2 cut(s) 280, 319
Bpu10I CCTNAGC 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 443
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 96, 443
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 130, 213
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 406
Bsh1236I CGCG 2 cut(s) 134, 136
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 107, 230
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 84, 279
BslI CCNNNNNNNGG 2 cut(s) 96, 443
BsmAI GTCTC 1 cut(s) 117
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 107, 230
BspACI CCGC 6 cut(s) 120, 129, 132, 192, 372, 409
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 129, 212
BspFNI CGCG 2 cut(s) 134, 136
BspLI GGNNCC 2 cut(s) 88, 127
BspQI GCTCTTC 2 cut(s) 95, 422
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 327
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 319
Bst6I CTCTTC 4 cut(s) 95, 172, 247, 422
BstACI GRCGYC 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 116, 199, 265, 402
BstFNI CGCG 2 cut(s) 134, 136
BstH2I RGCGCY 2 cut(s) 129, 394
BstHHI GCGC 4 cut(s) 128, 136, 357, 393
BstMAI GTCTC 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 284, 429, 438
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 2 cut(s) 278, 317
BstUI CGCG 2 cut(s) 134, 136
BstV1I GCAGC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 278
BtrI CACGTC 1 cut(s) 398
BtsI GCAGTG 3 cut(s) 24, 151, 448
BtsIMutI CAGTG 3 cut(s) 24, 151, 448
CfoI GCGC 4 cut(s) 128, 136, 357, 393
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 276, 315, 415
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 341, 358
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 4 cut(s) 116, 199, 265, 402
DinI GGCGCC 1 cut(s) 127
DraIII CACNNNGTG 1 cut(s) 62
Eam1104I CTCTTC 4 cut(s) 95, 172, 247, 422
EarI CTCTTC 4 cut(s) 95, 172, 247, 422
EciI GGCGGA 2 cut(s) 181, 424
Ecl136II GAGCTC 2 cut(s) 105, 228
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 2 cut(s) 107, 230
Eco47I GGWCC 2 cut(s) 315, 415
Eco53kI GAGCTC 2 cut(s) 105, 228
Eco88I CYCGRG 1 cut(s) 45
EcoICRI GAGCTC 2 cut(s) 105, 228
EcoO109I RGGNCCY 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 2 cut(s) 107, 230
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 2 cut(s) 344, 361
FaiI YATR 2 cut(s) 342, 359
FatI CATG 2 cut(s) 340, 357
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 3 cut(s) 129, 132, 288
FriOI GRGCYC 2 cut(s) 107, 230
Fsp4HI GCNGC 3 cut(s) 129, 132, 288
FspBI CTAG 2 cut(s) 96, 231
GlaI GCGC 4 cut(s) 127, 135, 356, 392
GluI GCNGC 3 cut(s) 129, 132, 288
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 2 cut(s) 129, 394
HaeIII GGCC 1 cut(s) 278
HapII CCGG 2 cut(s) 84, 279
HhaI GCGC 4 cut(s) 128, 136, 357, 393
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 344, 361
Hin6I GCGC 4 cut(s) 126, 134, 355, 391
HinP1I GCGC 4 cut(s) 126, 134, 355, 391
HinfI GANTC 1 cut(s) 345
HpaII CCGG 2 cut(s) 84, 279
HphI GGTGA 2 cut(s) 73, 283
Hpy99I CGWCG 1 cut(s) 399
HpyAV CCTTC 4 cut(s) 169, 205, 277, 406
HpyCH4IV ACGT 2 cut(s) 397, 451
HpyCH4V TGCA 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 429, 438
HpyF3I CTNAG 4 cut(s) 116, 199, 265, 402
HpySE526I ACGT 2 cut(s) 397, 451
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 344, 361
HspAI GCGC 4 cut(s) 126, 134, 355, 391
KasI GGCGCC 1 cut(s) 125
LguI GCTCTTC 2 cut(s) 95, 422
LmnI GCTCC 3 cut(s) 92, 110, 161
LpnPI CCDG 9 cut(s) 73, 97, 186, 292, 304, 305, 331, 354, 451
Lsp1109I GCAGC 1 cut(s) 274
MaeI CTAG 2 cut(s) 96, 231
MaeII ACGT 2 cut(s) 397, 451
MboII GAAGA 6 cut(s) 112, 159, 258, 261, 264, 439
MhlI GDGCHC 2 cut(s) 107, 230
Mly113I GGCGCC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 7 cut(s) 61, 89, 181, 184, 248, 267, 428
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 2 cut(s) 84, 279
MspR9I CCNGG 2 cut(s) 280, 319
MvaI CCWGG 1 cut(s) 319
MvnI CGCG 2 cut(s) 134, 136
MwoI GCNNNNNNNGC 3 cut(s) 284, 429, 438
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 1 cut(s) 280
NlaIII CATG 2 cut(s) 344, 361
NlaIV GGNNCC 2 cut(s) 88, 127
PaeR7I CTCGAG 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 95, 422
PfeI GAWTC 1 cut(s) 345
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 3 cut(s) 130, 133, 289
PluTI GGCGCC 1 cut(s) 129
PpuMI RGGWCCY 1 cut(s) 415
Psp124BI GAGCTC 2 cut(s) 107, 230
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 88, 127
PspPI GGNCC 3 cut(s) 276, 315, 415
PspPPI RGGWCCY 1 cut(s) 415
PspXI VCTCGAGB 1 cut(s) 45
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 2 cut(s) 107, 230
SapI GCTCTTC 2 cut(s) 95, 422
SatI GCNGC 3 cut(s) 129, 132, 288
Sau96I GGNCC 3 cut(s) 276, 315, 415
ScrFI CCNGG 2 cut(s) 280, 319
SduI GDGCHC 2 cut(s) 107, 230
SetI ASST 8 cut(s) 39, 107, 205, 230, 317, 400, 417, 454
SfoI GGCGCC 1 cut(s) 127
Sfr274I CTCGAG 1 cut(s) 45
SinI GGWCC 2 cut(s) 315, 415
SlaI CTCGAG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SsiI CCGC 6 cut(s) 120, 129, 132, 192, 372, 409
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 2 cut(s) 96, 231
SstI GAGCTC 2 cut(s) 107, 230
StyD4I CCNGG 2 cut(s) 278, 317
StyI CCWWGG 1 cut(s) 327
TaiI ACGT 2 cut(s) 400, 454
TaqI TCGA 2 cut(s) 46, 334
TauI GCSGC 2 cut(s) 131, 134
TfiI GAWTC 1 cut(s) 345
TscAI CASTG 3 cut(s) 24, 158, 448
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 151, 401
TspGWI ACGGA 2 cut(s) 97, 338
TspRI CASTG 3 cut(s) 24, 158, 448
VpaK11BI GGWCC 2 cut(s) 315, 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XhoI CTCGAG 1 cut(s) 45
XspI CTAG 2 cut(s) 96, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.