RLG00000031741

ribosomal protein L34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008821
Physical Location & Seq
Forward (+)
7910799 .. 7911859
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031741

Sequence Viewer

Length: 450 bp
ATGGCTACACTCTCAGGAATTTCATGGTCACCTTCTCTCTCAACTAGACCCACAACTTCTGCTTCCCTAACATTCCTCACCGGAAGGAGAACCTCCGTCTCTGTCAACGTTGCCGCCGCGCGTTCTTCGTTGCTTCACTGCTCCTTCATCTCCTCCTCTTCTGCTTCTCTCTCTTCCCCTTCTTCGTTTTCAGGTTTATCTTTGGGTTGGGATTTGAGCTCTAATGTTGGGGTTGGAAGAAGACGAGGCTCTGGCTTAGTGGTGAGGGCTGGGAAGCCTGCCCTGTGTCTAACAAAGAGAAACAGGTCCCGGAAATCTCTGGCTCGAACTCACGGCTTCCGCAGACGCATGAGAACCACTAGCGGTAGAGCAATGTTGAAGCGCCGACGCGCCAAGGGGCGGAAGGTCCTCTGCACCAAGACCAATGCCAACAGTGGAAAACGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L34

Protein Analysis

150

Amino Acids

15.91

Weight (kDa)

12.0

Isoelectric Point (pI)

69.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L34 PF00468 107 - 138 9e-11 Ribosomal protein L34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 119, 121, 390
AciI CCGC 5 cut(s) 114, 117, 340, 363, 400
AclI AACGTT 1 cut(s) 108
AcsI RAATTY 1 cut(s) 18
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 3 cut(s) 121, 384, 392
AspS9I GGNCC 2 cut(s) 306, 406
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 3 cut(s) 21, 70, 274
AvaII GGWCC 2 cut(s) 306, 406
BanII GRGCYC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 349
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 45, 360
BfoI RGCGCY 1 cut(s) 385
BisI GCNGC 2 cut(s) 114, 117
BlsI GCNGC 2 cut(s) 115, 118
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 2 cut(s) 306, 406
BmgT120I GGNCC 2 cut(s) 306, 406
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 378
BseDI CCNNGG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 142, 145
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 3 cut(s) 119, 121, 390
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 2 cut(s) 81, 310
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 221
BspACI CCGC 5 cut(s) 114, 117, 340, 363, 400
BspCNI CTCAG 1 cut(s) 26
BspFNI CGCG 3 cut(s) 119, 121, 390
BspLI GGNNCC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 2 cut(s) 163, 178
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 13, 256
BstEII GGTNACC 1 cut(s) 27
BstFNI CGCG 3 cut(s) 119, 121, 390
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 3 cut(s) 121, 384, 392
BstMAI GTCTC 1 cut(s) 103
BstPI GGTNACC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 308
BstUI CGCG 3 cut(s) 119, 121, 390
BstV2I GAAGAC 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 439
Cac8I GCNNGC 1 cut(s) 279
CfoI GCGC 3 cut(s) 121, 384, 392
Cfr13I GGNCC 2 cut(s) 306, 406
CseI GACGC 2 cut(s) 354, 396
CviAII CATG 2 cut(s) 24, 349
CviJI RGCY 8 cut(s) 5, 219, 249, 255, 269, 277, 323, 336
CviKI_1 RGCY 8 cut(s) 5, 219, 249, 255, 269, 277, 323, 336
DdeI CTNAG 2 cut(s) 13, 256
Eam1104I CTCTTC 2 cut(s) 163, 178
EarI CTCTTC 2 cut(s) 163, 178
EciI GGCGGA 1 cut(s) 415
Ecl136II GAGCTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 306, 406
Eco53kI GAGCTC 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 219
EcoO109I RGGNCCY 2 cut(s) 306, 406
EcoO65I GGTNACC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 27, 352
FaiI YATR 2 cut(s) 25, 350
FaqI GGGAC 1 cut(s) 292
FatI CATG 2 cut(s) 23, 348
Fnu4HI GCNGC 2 cut(s) 114, 117
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 114, 117
FspBI CTAG 2 cut(s) 45, 360
GlaI GCGC 3 cut(s) 120, 383, 391
GluI GCNGC 2 cut(s) 114, 117
GsaI CCCAGC 1 cut(s) 273
HaeII RGCGCY 1 cut(s) 385
HapII CCGG 2 cut(s) 81, 310
HgaI GACGC 2 cut(s) 354, 396
HhaI GCGC 3 cut(s) 121, 384, 392
Hin1II CATG 2 cut(s) 27, 352
Hin6I GCGC 3 cut(s) 119, 382, 390
HinP1I GCGC 3 cut(s) 119, 382, 390
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HpaII CCGG 2 cut(s) 81, 310
HphI GGTGA 3 cut(s) 21, 70, 274
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 5 cut(s) 42, 78, 154, 189, 397
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 2 cut(s) 108, 442
HpyCH4V TGCA 1 cut(s) 414
HpyF3I CTNAG 2 cut(s) 13, 256
HpySE526I ACGT 2 cut(s) 108, 442
Hsp92II CATG 2 cut(s) 27, 352
HspAI GCGC 3 cut(s) 119, 382, 390
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 9 cut(s) 94, 177, 237, 255, 289, 291, 296, 305, 323
MaeI CTAG 2 cut(s) 45, 360
MaeII ACGT 2 cut(s) 108, 442
MaeIII GTNAC 1 cut(s) 27
MboII GAAGA 6 cut(s) 117, 150, 165, 174, 249, 252
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 7 cut(s) 86, 103, 163, 166, 239, 258, 419
MspI CCGG 2 cut(s) 81, 310
MspR9I CCNGG 1 cut(s) 310
MvnI CGCG 3 cut(s) 119, 121, 390
NciI CCSGG 1 cut(s) 310
NlaIII CATG 2 cut(s) 27, 352
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 308
PkrI GCNGC 2 cut(s) 115, 118
PpuMI RGGWCCY 2 cut(s) 306, 406
Psp124BI GAGCTC 1 cut(s) 221
Psp1406I AACGTT 1 cut(s) 108
Psp5II RGGWCCY 2 cut(s) 306, 406
PspEI GGTNACC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 2 cut(s) 306, 406
PspPPI RGGWCCY 2 cut(s) 306, 406
SacI GAGCTC 1 cut(s) 221
SatI GCNGC 2 cut(s) 114, 117
Sau96I GGNCC 2 cut(s) 306, 406
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 1 cut(s) 221
SetI ASST 8 cut(s) 34, 95, 111, 196, 221, 308, 408, 445
SinI GGWCC 2 cut(s) 306, 406
Sse9I AATT 1 cut(s) 18
SsiI CCGC 5 cut(s) 114, 117, 340, 363, 400
SspMI CTAG 2 cut(s) 45, 360
SstI GAGCTC 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 2 cut(s) 111, 445
TaqI TCGA 1 cut(s) 325
TasI AATT 1 cut(s) 18
TauI GCSGC 2 cut(s) 116, 119
TscAI CASTG 2 cut(s) 143, 439
TseFI GTSAC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 12, 136
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 143, 439
VpaK11BI GGWCC 2 cut(s) 306, 406
XapI RAATTY 1 cut(s) 18
XspI CTAG 2 cut(s) 45, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.