Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008821

Physical Location & Seq

Genomic Coordinates Forward (+)

2840809 .. 2842211

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G059500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTTCAATAACAGCAATGTCATTGTCACCTTGCCTTTCAAGTAGAGGCATACAGCAAGCCTCCACACCTTCTGCTTCTCTCACATTCCTCACTGGGTCAAGAACCAGCAAGAGCTCTGTGTCTCTCAACGCTGCCACTCCTCGTTCTTCGTTGCTTCACTGCTCCTTCGTCCCTTCATCCTCTCTCTCTTTCCCTTCCTCGTTTTCAGGTTTATCTCTTGGGTTGGATTTGAGTTCTAGTATTGGGGTTGGAAGAAGAAGAAGCTCTGGCTTAGTGGTGAAGGCTGGGAAGGCTGCTCTGTGTCTAACCAAGAGAAATAGGTCCCGGAAATCTTTGGCTCGAACTCATGGCTTCCGCAGACGCATGAGAACCACTGGTGGTAGAGCAATGTTGAAGCGCCGACGTGCTAAGGGACGGAAGATCCTCTGCACAAAGACCAATCCCAACAGTGGAAAACGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L34

Protein Analysis

156

Amino Acids

16.43

Weight (kDa)

12.0

Isoelectric Point (pI)

75.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29070
fragaria_vesca	FvH4_3g07980
malus_domestica	MD05G1303200.v1.1 MD08G1042600.v1.1 MD10G1067400.v1.1 MD10G1282300.v1.1 MD16G1032000.v1.1 MD16G1032400.v1.1
prunus_persica	Prupe.4G059500_v2.0.a1
pyrus_communis	pycom05g28030 pycom10g23550
rosa_chinensis	RchiOBHm_Chr5g0010351
rosa_laevigata	RLG00000031741 RLG00000031750
rosa_multiflora	Rmu_sc0007816.1_g000004 Rmu_sc0009313.1_g000022
rosa_roxburghii	Rroxscaffold_1G00065910
rosa_rugosa	Rorug04G0450100
rosa_samantha	Rh5AG081600 Rh5BG076400 Rh5CG089700 Rh5DG077100
rosa_wichuraiana	Rw5G007550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	1 cut(s)	418
AfiI	CCNNNNNNNGG	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	9, 42, 397
AjiI	CACGTC	1 cut(s)	407
AluBI	AGCT	2 cut(s)	117, 267
AluI	AGCT	2 cut(s)	117, 267
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	134, 296
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	21, 292
AvaII	GGWCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	121, 283
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	403
BisI	GCNGC	2 cut(s)	135, 297
BlsI	GCNGC	2 cut(s)	136, 298
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	328
BmrI	ACTGGG	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	100, 382
Bse3DI	GCAATG	2 cut(s)	24, 396
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMI	GCAATG	2 cut(s)	24, 396
BseNI	ACTGG	2 cut(s)	100, 382
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	121, 283
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	3 cut(s)	158, 310, 429
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	129
BsmFI	GGGAC	3 cut(s)	158, 310, 429
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	24, 396
BsrI	ACTGG	2 cut(s)	100, 382
BssMI	GATC	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	274, 411
BstF5I	GGATG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	121, 283
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	4 cut(s)	93, 160, 375, 457
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	1 cut(s)	372
CviAII	CATG	2 cut(s)	350, 367
CviJI	RGCY	9 cut(s)	5, 62, 117, 267, 273, 287, 296, 341, 354
CviKI_1	RGCY	9 cut(s)	5, 62, 117, 267, 273, 287, 296, 341, 354
DdeI	CTNAG	2 cut(s)	274, 411
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	2 cut(s)	353, 370
FaiI	YATR	3 cut(s)	53, 351, 368
FaqI	GGGAC	3 cut(s)	158, 310, 429
FatI	CATG	2 cut(s)	349, 366
Fnu4HI	GCNGC	2 cut(s)	135, 297
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	135, 297
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	135, 297
GsaI	CCCAGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	403
HapII	CCGG	1 cut(s)	328
HgaI	GACGC	1 cut(s)	372
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	353, 370
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	21, 292
Hpy188III	TCNNGA	1 cut(s)	102
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	6 cut(s)	81, 178, 186, 207, 277, 286
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	2 cut(s)	406, 460
HpyCH4V	TGCA	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	274, 411
HpySE526I	ACGT	2 cut(s)	406, 460
Hsp92II	CATG	2 cut(s)	353, 370
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	7 cut(s)	81, 121, 195, 255, 273, 341, 363
Lsp1109I	GCAGC	2 cut(s)	121, 283
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	406, 460
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	5 cut(s)	141, 267, 270, 273, 433
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	207, 232
MnlI	CCTC	7 cut(s)	41, 73, 101, 153, 193, 211, 437
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	2 cut(s)	353, 370
NlaIV	GGNNCC	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	136, 298
PpuMI	RGGWCCY	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	324
PspPPI	RGGWCCY	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	119
SatI	GCNGC	2 cut(s)	135, 297
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	8 cut(s)	34, 73, 119, 214, 269, 326, 409, 463
SinI	GGWCC	1 cut(s)	324
SsiI	CCGC	1 cut(s)	358
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	2 cut(s)	409, 463
TaqI	TCGA	1 cut(s)	343
TscAI	CASTG	4 cut(s)	100, 167, 382, 457
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	2 cut(s)	134, 296
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	4 cut(s)	100, 167, 382, 457
VpaK11BI	GGWCC	1 cut(s)	324
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.