AT1G29120

lipase YDR444W

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10174162 .. 10178521
4360 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29120.6

Sequence Viewer

Length: 1368 bp
ATGTCTACGGCTTCTTCTTGGATTCAACAACCTCCTTTTAGATACTTACCGGATCGTGGCGGTTTCTCTAAGCCAAGCTCTCGCAGCGCGCGGCAGTTTTCCTCCGGCGTTGTTTCAGCTTCCGCTTCTTCTCCTTCGCCTTCATCCTCGTGCTCCTGTGGTTATTCGGAGATTTTGAATTTCGATTTCGGGTCAAACAGAAGCTGGAACCAACAGGGACGCAGGGTTCAGGCAATGAGTTCCACAGCCCAACGGAAATTTTCGCTATCGAAAGGCGACTCCGATGACAAAAATGAACCTGATCATCTTCTTGTTCTTGTACATGGTATTTTGGCCAGTCCCAGCGACTGGCTCTACGTAGAAGCTGAGCTGAAAAGACGCCTTGGAAGAAGATTCTTGATTTATGCAAGTTCTTCCAATACCTTCACTAAAACATTTGGCGGGATCGATGGAGCTGGAAAACGACTAGCAGAAGAGGTTAGACAAGTTGTCCAAAAGAGCAAGAGCTTAAAGAAGATTTCGTTTTTAGCCCACTCCCTCGGTGGCTTATTTTCCAGACATGCTGTTGCTGTTCTTTACTCAGCAGCAATGGCACAAGTAAGTGATGTTGCTGTCTCTCAATCTGGCAATTCAAATCTTCTGCGAGGTAGGATTGCGGGGCTAGAACCGATTAATTTCATCACTTTGGCAACACCTCATCTAGGAGTGAGAGGCAGAAAGCAGCTGCCTTTTCTGTTGGGAGTTCCTATTCTTGAGAAACTTGCTGCACCAATAGCTCCATTCTTTGTTGGTCGGACTGGTAGTCAGTTGTTCCTCACTGATGGTAAAGCTGATAAACCACCTCTTCTTTTGAGGATGGCATCTGATGGTGAAGATCTGAAATTCTTATCGGCGCTGGGGGCATTTCGAAGTCGCATTATATATGCAAACGTATCTTATGACCACATGGTTGGTTGGCGTACATCTTCCATTAGGAGAGAAACTGAACTTATCAAGCCTTCACGCCGGTCTCTGGATGGATACAAGCATGTTGTTGATGTTGAATACTGTCCACCTGTTTCATCAGATGGTGCCCATTTCCCTCCAGAAGCTGCTAAAGCCAAGGAGGCCGCACAAAGCTCTCCTAGCCCTCAGAACACACTTGAGTATCATGAAATTGTGGAAGAGGAAATGATCCGCGGTCTGCAGAGGTTGGGGTGGAAGAAAGTTGATGTCAGCTTCCACTCCACCTTCTGGCCTTACTTAGCTCATAACAACATTCACGTGAAAAGTGAAAGACTTTACAAAGCAGGAGCTGGAGTTATTGCACACGTTGCAGATAGTATAAAACAGCAAGAGTCTTCCACGTTTATTACCGCCAGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

49.92

Weight (kDa)

9.7

Isoelectric Point (pI)

59.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 98 - 317 1.1e-68 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1366
AccB1I GGYRCC 1 cut(s) 1070
AccB7I CCANNNNNTGG 2 cut(s) 348, 1233
AccI GTMKAC 1 cut(s) 5
AccII CGCG 3 cut(s) 89, 91, 1179
AciI CCGC 9 cut(s) 60, 91, 123, 441, 656, 1110, 1177, 1179, 1356
AclWI GGATC 3 cut(s) 60, 452, 1168
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 3 cut(s) 178, 257, 881
AcvI CACGTG 1 cut(s) 1264
AcyI GRCGYC 1 cut(s) 379
AfaI GTAC 2 cut(s) 321, 961
AfiI CCNNNNNNNGG 5 cut(s) 56, 348, 701, 1012, 1233
AflIII ACRYGT 1 cut(s) 1309
AgsI TTSAA 4 cut(s) 26, 178, 633, 1043
AhdI GACNNNNNGTC 2 cut(s) 488, 801
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 2 cut(s) 619, 1014
AlwI GGATC 3 cut(s) 60, 452, 1168
AlwNI CAGNNNCTG 4 cut(s) 204, 348, 1091, 1295
AoxI GGCC 3 cut(s) 333, 1107, 1235
ApeKI GCWGC 6 cut(s) 84, 584, 721, 724, 764, 1091
ApoI RAATTY 3 cut(s) 178, 257, 881
AseI ATTAAT 1 cut(s) 672
AspLEI GCGC 3 cut(s) 89, 91, 895
AsuHPI GGTGA 1 cut(s) 881
AsuII TTCGAA 1 cut(s) 907
BaeGI GKGCMC 1 cut(s) 1075
BaeI ACNNNNGTAYC 2 cut(s) 1130, 1163
BalI TGGCCA 1 cut(s) 335
BanI GGYRCC 1 cut(s) 1070
BauI CACGAG 1 cut(s) 148
BbrPI CACGTG 1 cut(s) 1264
BbsI GAAGAC 1 cut(s) 1332
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 6 cut(s) 96, 596, 711, 733, 751, 1078
BccI CCATC 6 cut(s) 443, 815, 850, 860, 1010, 1061
BceAI ACGGC 1 cut(s) 24
BciVI GTATCC 1 cut(s) 1013
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 619, 1014
BfaI CTAG 4 cut(s) 467, 662, 701, 1125
BfmI CTRYAG 1 cut(s) 1184
BfoI RGCGCY 1 cut(s) 896
BfuI GTATCC 1 cut(s) 1013
BglI GCCNNNNNGGC 1 cut(s) 1106
BglII AGATCT 1 cut(s) 874
BisI GCNGC 8 cut(s) 85, 92, 585, 722, 725, 765, 1092, 1110
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 8 cut(s) 86, 93, 586, 723, 726, 766, 1093, 1111
BmeRI GACNNNNNGTC 2 cut(s) 488, 801
BmiI GGNNCC 2 cut(s) 209, 1072
BmsI GCATC 1 cut(s) 869
BpiI GAAGAC 1 cut(s) 1332
BpmI CTGGAG 2 cut(s) 1068, 1317
Bpu1102I GCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 907
BpuEI CTTGAG 2 cut(s) 773, 1163
Bsa29I ATCGAT 1 cut(s) 447
BsaAI YACGTR 2 cut(s) 358, 1264
BsaHI GRCGYC 1 cut(s) 379
BsaI GGTCTC 1 cut(s) 1014
BsaJI CCNNGG 4 cut(s) 382, 538, 1101, 1177
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 1284, 1314
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 348, 701, 1012, 1233
Bse118I RCCGGY 1 cut(s) 1005
Bse1I ACTGG 3 cut(s) 336, 353, 802
Bse3DI GCAATG 2 cut(s) 240, 594
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 4 cut(s) 382, 538, 1101, 1177
BseGI GGATG 3 cut(s) 143, 861, 1021
BseLI CCNNNNNNNGG 5 cut(s) 56, 348, 701, 1012, 1233
BseMI GCAATG 2 cut(s) 240, 594
BseMII CTCAG 3 cut(s) 357, 594, 1145
BseNI ACTGG 3 cut(s) 336, 353, 802
BsePI GCGCGC 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 1075
BseXI GCAGC 6 cut(s) 96, 596, 711, 733, 751, 1078
BseYI CCCAGC 2 cut(s) 341, 895
BsgI GTGCAG 1 cut(s) 750
Bsh1236I CGCG 3 cut(s) 89, 91, 1179
BshFI GGCC 3 cut(s) 335, 1109, 1237
BshNI GGYRCC 1 cut(s) 1070
BshVI ATCGAT 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 3 cut(s) 50, 105, 1006
BslFI GGGAC 2 cut(s) 231, 324
BslI CCNNNNNNNGG 5 cut(s) 56, 348, 701, 1012, 1233
BsmAI GTCTC 2 cut(s) 619, 1014
BsmFI GGGAC 2 cut(s) 231, 324
BsnI GGCC 3 cut(s) 335, 1109, 1237
Bso31I GGTCTC 1 cut(s) 1014
Bsp119I TTCGAA 1 cut(s) 907
Bsp1286I GDGCHC 2 cut(s) 155, 1075
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 5 cut(s) 52, 301, 444, 874, 1173
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 9 cut(s) 60, 91, 123, 441, 656, 1110, 1177, 1179, 1356
BspANI GGCC 3 cut(s) 335, 1109, 1237
BspCNI CTCAG 3 cut(s) 358, 593, 1144
BspDI ATCGAT 1 cut(s) 447
BspFNI CGCG 3 cut(s) 89, 91, 1179
BspHI TCATGA 1 cut(s) 1150
BspLI GGNNCC 2 cut(s) 209, 1072
BspMAI CTGCAG 1 cut(s) 1188
BspPI GGATC 3 cut(s) 60, 452, 1168
BspT104I TTCGAA 1 cut(s) 907
BspT107I GGYRCC 1 cut(s) 1070
BspTNI GGTCTC 1 cut(s) 1014
BsrDI GCAATG 2 cut(s) 240, 594
BsrFI RCCGGY 1 cut(s) 1005
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 3 cut(s) 336, 353, 802
BssAI RCCGGY 1 cut(s) 1005
BssECI CCNNGG 4 cut(s) 382, 538, 1101, 1177
BssHII GCGCGC 1 cut(s) 87
BssMI GATC 5 cut(s) 52, 301, 444, 874, 1173
BssNI GRCGYC 1 cut(s) 379
BssSI CACGAG 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 382, 1101
Bst2BI CACGAG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 1049
Bst6I CTCTTC 3 cut(s) 468, 849, 1158
BstACI GRCGYC 1 cut(s) 379
BstAPI GCANNNNNTGC 1 cut(s) 1313
BstAUI TGTACA 1 cut(s) 319
BstBAI YACGTR 2 cut(s) 358, 1264
BstBI TTCGAA 1 cut(s) 907
BstC8I GCNNGC 2 cut(s) 89, 1360
BstDEI CTNAG 5 cut(s) 69, 366, 580, 1131, 1243
BstDSI CCRYGG 1 cut(s) 1177
BstENI CCTNNNNNAGG 1 cut(s) 699
BstF5I GGATG 3 cut(s) 143, 861, 1021
BstFNI CGCG 3 cut(s) 89, 91, 1179
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 3 cut(s) 89, 91, 895
BstKTI GATC 5 cut(s) 55, 304, 447, 877, 1176
BstMAI GTCTC 2 cut(s) 619, 1014
BstMBI GATC 5 cut(s) 52, 301, 444, 874, 1173
BstMWI GCNNNNNNNGC 8 cut(s) 84, 590, 773, 899, 1097, 1106, 1125, 1313
BstNSI RCATGY 2 cut(s) 563, 1031
BstSFI CTRYAG 1 cut(s) 1184
BstSLI GKGCMC 1 cut(s) 1075
BstSNI TACGTA 1 cut(s) 358
BstUI CGCG 3 cut(s) 89, 91, 1179
BstV1I GCAGC 6 cut(s) 96, 596, 711, 733, 751, 1078
BstV2I GAAGAC 1 cut(s) 1332
BstX2I RGATCY 1 cut(s) 874
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 1 cut(s) 874
Bsu15I ATCGAT 1 cut(s) 447
BsuI GTATCC 1 cut(s) 1013
BsuRI GGCC 3 cut(s) 335, 1109, 1237
BsuTUI ATCGAT 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 1177
BtsCI GGATG 3 cut(s) 143, 861, 1021
BtsIMutI CAGTG 1 cut(s) 816
Cac8I GCNNGC 2 cut(s) 89, 1360
CaiI CAGNNNCTG 4 cut(s) 204, 348, 1091, 1295
CciI TCATGA 1 cut(s) 1150
CfoI GCGC 3 cut(s) 89, 91, 895
Cfr10I RCCGGY 1 cut(s) 1005
Cfr42I CCGCGG 1 cut(s) 1180
ClaI ATCGAT 1 cut(s) 447
CseI GACGC 2 cut(s) 228, 387
Csp6I GTAC 2 cut(s) 320, 960
CviAII CATG 5 cut(s) 323, 560, 946, 1028, 1151
CviQI GTAC 2 cut(s) 320, 960
DdeI CTNAG 5 cut(s) 69, 366, 580, 1131, 1243
DpnI GATC 5 cut(s) 54, 303, 446, 876, 1175
DpnII GATC 5 cut(s) 52, 301, 444, 874, 1173
DriI GACNNNNNGTC 2 cut(s) 488, 801
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 3 cut(s) 468, 849, 1158
Eam1105I GACNNNNNGTC 2 cut(s) 488, 801
EarI CTCTTC 3 cut(s) 468, 849, 1158
Eco105I TACGTA 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 382, 1101
Eco31I GGTCTC 1 cut(s) 1014
Eco72I CACGTG 1 cut(s) 1264
EcoNI CCTNNNNNAGG 1 cut(s) 699
EcoT14I CCWWGG 2 cut(s) 382, 1101
ErhI CCWWGG 2 cut(s) 382, 1101
FaeI CATG 5 cut(s) 326, 563, 949, 1031, 1154
FaqI GGGAC 2 cut(s) 231, 324
FatI CATG 5 cut(s) 322, 559, 945, 1027, 1150
FauI CCCGC 2 cut(s) 434, 649
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 8 cut(s) 85, 92, 585, 722, 725, 765, 1092, 1110
FokI GGATG 3 cut(s) 130, 868, 1028
Fsp4HI GCNGC 8 cut(s) 85, 92, 585, 722, 725, 765, 1092, 1110
FspBI CTAG 4 cut(s) 467, 662, 701, 1125
GlaI GCGC 3 cut(s) 88, 90, 894
GluI GCNGC 8 cut(s) 85, 92, 585, 722, 725, 765, 1092, 1110
GsaI CCCAGC 2 cut(s) 345, 899
GsuI CTGGAG 2 cut(s) 1068, 1317
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 3 cut(s) 335, 1109, 1237
HapII CCGG 3 cut(s) 50, 105, 1006
HgaI GACGC 2 cut(s) 228, 387
HhaI GCGC 3 cut(s) 89, 91, 895
Hin1I GRCGYC 1 cut(s) 379
Hin1II CATG 5 cut(s) 326, 563, 949, 1031, 1154
Hin6I GCGC 3 cut(s) 87, 89, 893
HinP1I GCGC 3 cut(s) 87, 89, 893
HinfI GANTC 4 cut(s) 22, 278, 393, 1337
HpaII CCGG 3 cut(s) 50, 105, 1006
HphI GGTGA 1 cut(s) 881
Hpy166II GTNNAC 2 cut(s) 6, 1052
Hpy188I TCNGA 7 cut(s) 169, 283, 795, 865, 879, 1066, 1134
Hpy188III TCNNGA 6 cut(s) 397, 555, 752, 1013, 1085, 1151
Hpy8I GTNNAC 2 cut(s) 6, 1052
HpyAV CCTTC 5 cut(s) 144, 150, 433, 1008, 1240
HpyCH4III ACNGT 1 cut(s) 1049
HpyCH4IV ACGT 5 cut(s) 357, 930, 1263, 1311, 1346
HpyCH4V TGCA 6 cut(s) 407, 767, 926, 1186, 1307, 1316
HpyF10VI GCNNNNNNNGC 8 cut(s) 84, 590, 773, 899, 1097, 1106, 1125, 1313
HpyF3I CTNAG 5 cut(s) 69, 366, 580, 1131, 1243
HpySE526I ACGT 5 cut(s) 357, 930, 1263, 1311, 1346
Hsp92I GRCGYC 1 cut(s) 379
Hsp92II CATG 5 cut(s) 326, 563, 949, 1031, 1154
HspAI GCGC 3 cut(s) 87, 89, 893
Ksp22I TGATCA 1 cut(s) 301
KspI CCGCGG 1 cut(s) 1180
Kzo9I GATC 5 cut(s) 52, 301, 444, 874, 1173
LmnI GCTCC 4 cut(s) 158, 452, 781, 1292
Lsp1109I GCAGC 6 cut(s) 96, 596, 711, 733, 751, 1078
LweI GCATC 1 cut(s) 869
MaeI CTAG 4 cut(s) 467, 662, 701, 1125
MaeII ACGT 5 cut(s) 357, 930, 1263, 1311, 1346
MalI GATC 5 cut(s) 54, 303, 446, 876, 1175
MboI GATC 5 cut(s) 52, 301, 444, 874, 1173
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 2 cut(s) 155, 1075
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 6 cut(s) 178, 257, 628, 673, 881, 1155
MluNI TGGCCA 1 cut(s) 335
MlyI GAGTC 2 cut(s) 272, 1346
MmeI TCCRAC 1 cut(s) 773
Mox20I TGGCCA 1 cut(s) 335
MscI TGGCCA 1 cut(s) 335
MseI TTAA 2 cut(s) 509, 672
MslI CAYNNNNRTG 2 cut(s) 148, 1262
Msp20I TGGCCA 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 724, 1179
MspI CCGG 3 cut(s) 50, 105, 1006
MvnI CGCG 3 cut(s) 89, 91, 1179
MwoI GCNNNNNNNGC 8 cut(s) 84, 590, 773, 899, 1097, 1106, 1125, 1313
NdeII GATC 5 cut(s) 52, 301, 444, 874, 1173
NlaIII CATG 5 cut(s) 326, 563, 949, 1031, 1154
NlaIV GGNNCC 2 cut(s) 209, 1072
NspI RCATGY 2 cut(s) 563, 1031
NspV TTCGAA 1 cut(s) 907
PagI TCATGA 1 cut(s) 1150
PauI GCGCGC 1 cut(s) 87
PfeI GAWTC 2 cut(s) 22, 393
PflMI CCANNNNNTGG 2 cut(s) 348, 1233
PkrI GCNGC 8 cut(s) 86, 93, 586, 723, 726, 766, 1093, 1111
PleI GAGTC 2 cut(s) 272, 1345
PmaCI CACGTG 1 cut(s) 1264
PmlI CACGTG 1 cut(s) 1264
PpsI GAGTC 2 cut(s) 272, 1345
Ppu21I YACGTR 2 cut(s) 358, 1264
PshBI ATTAAT 1 cut(s) 672
PsiI TTATAA 1 cut(s) 1366
PspCI CACGTG 1 cut(s) 1264
PspFI CCCAGC 2 cut(s) 341, 895
PspN4I GGNNCC 2 cut(s) 209, 1072
PstI CTGCAG 1 cut(s) 1188
PstNI CAGNNNCTG 4 cut(s) 204, 348, 1091, 1295
PsuI RGATCY 1 cut(s) 874
PteI GCGCGC 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 724
RsaI GTAC 2 cut(s) 321, 961
RsaNI GTAC 2 cut(s) 320, 960
RseI CAYNNNNRTG 2 cut(s) 148, 1262
SacII CCGCGG 1 cut(s) 1180
SaqAI TTAA 2 cut(s) 509, 672
SatI GCNGC 8 cut(s) 85, 92, 585, 722, 725, 765, 1092, 1110
Sau3AI GATC 5 cut(s) 52, 301, 444, 874, 1173
SchI GAGTC 2 cut(s) 272, 1346
SduI GDGCHC 2 cut(s) 155, 1075
SfaNI GCATC 1 cut(s) 869
SfcI CTRYAG 1 cut(s) 1184
Sfr303I CCGCGG 1 cut(s) 1180
SfuI TTCGAA 1 cut(s) 907
SgrBI CCGCGG 1 cut(s) 1180
SmiMI CAYNNNNRTG 2 cut(s) 148, 1262
SmlI CTYRAG 2 cut(s) 752, 1142
SmoI CTYRAG 2 cut(s) 752, 1142
SnaBI TACGTA 1 cut(s) 358
Sse9I AATT 6 cut(s) 178, 257, 628, 673, 881, 1155
SsiI CCGC 9 cut(s) 60, 91, 123, 441, 656, 1110, 1177, 1179, 1356
SspMI CTAG 4 cut(s) 467, 662, 701, 1125
StyI CCWWGG 2 cut(s) 382, 1101
TaaI ACNGT 1 cut(s) 1049
TaiI ACGT 5 cut(s) 360, 933, 1266, 1314, 1349
TaqI TCGA 4 cut(s) 183, 269, 447, 907
TasI AATT 6 cut(s) 178, 257, 628, 673, 881, 1155
TatI WGTACW 1 cut(s) 319
TauI GCSGC 2 cut(s) 94, 1112
TfiI GAWTC 2 cut(s) 22, 393
Tru1I TTAA 2 cut(s) 509, 672
Tru9I TTAA 2 cut(s) 509, 672
TscAI CASTG 1 cut(s) 823
TseI GCWGC 6 cut(s) 84, 584, 721, 724, 764, 1091
TspDTI ATGAA 5 cut(s) 132, 309, 667, 1050, 1167
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 823
Van91I CCANNNNNTGG 2 cut(s) 348, 1233
VspI ATTAAT 1 cut(s) 672
XagI CCTNNNNNAGG 1 cut(s) 699
XapI RAATTY 3 cut(s) 178, 257, 881
XceI RCATGY 2 cut(s) 563, 1031
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 4 cut(s) 467, 662, 701, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.