Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000109.1

Orthogroup ID

OG0004186

Physical Location & Seq

Genomic Coordinates Reverse (-)

116280 .. 119685

Gene Structure 3406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000109.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

atggcctccgctcctctaatccacgcgcgctgtggttactcgcccagattcagtagcagcagtaatcgacggaatggaggaggaggagctctaggttcgtcgccgtcgtcgtcttcgtcgtcgtgttgctcttcttcgtatttggccttctcttctggggcgtataattgctggaggaaccaaggactcagagctcacgctatgaccagtcaggggaattttgcttcttcctccagaggtgttgcgagtgcgggcaagaagcctgatcatcttctcgtacttgttcatggcatattggctaggtatgtcttcttccaactcgattttgattttgagttttcaggggcgtataattgctggaggaaccaaggactcagagctcacgctatgaccagtcaggggagttttgcttcttcctccagaggtgttgcgagtgcggggaagaagcccgatcatcttctcgtacttgttcatggcatattggctagcccaagtgattggacatacgtggaagcagaattacggaagcgtctaggcagaagcttcttaatctatgcaagttcatgcaacacgtacacaaaaacttttgccgggattgatggagctggaaagagactggcagatgaagtcatgcaagttgtgcaaaagacagatagcctcaagaaaatctcattcttagcccattctctagggggcttgtttgcaagatacgcaatatctgttctttacagacccagtgatattcccaattcacctcttgtaaattcaaaagcaacacactctttgagacgaggaaagattgccggtttggagccaatcaattttgtaacattggcaaccccacatcttggggtgagggggaaaaagcagcttccatttcttttaggcgtacctttgttagaaaagctggctgcgccaattgctcctattgttgttggtcgaactggtagtcagctgttcctcactgatggtaaacctgaaaaaccaccgcttcttttgagaatggcatctgattgtgaagatggaaattttgtatctgcattgggatcgtttagatctcggattctttatgctaatgtatcttatgatcatatggttggttggcgtacatcatccataaggagagagacagaaatttttaagcctcctcgccggtctttggttggctacaagcatgttgtagatgtagagtattgtcccccagtttcctctgacggcccccattttcctcctgaagcagctaaggcgaaggaggcagcccaaagtaaacccaaccaacagaacaccttggaatatcatgaaattgttgaagatgaaatgatacgaggcttacaacagttgggatggaaaaaggttgatgtcagctttcattctgcaccttggccattcttcgcccacaacaacattcatgtaaaaaatgaatggcttcacaatgctggtgctggagtggttgcacacgttgctgacactctaaagcaacaagaatcctccacattgactgccagcttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF676

Protein Analysis

503

Amino Acids

54.72

Weight (kDa)

9.59

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29120 AT1G29120 AT1G29120 AT1G29120 AT1G29120 AT1G29120 AT1G29120 AT1G29120
fragaria_vesca	FvH4_3g07820 FvH4_3g07820 FvH4_3g07820 FvH4_3g07820 FvH4_3g07820 FvH4_3g07820 FvH4_3g07820
malus_domestica	MD05G1301500.v1.1 MD10G1280400.v1.1
prunus_persica	Prupe.4G060900_v2.0.a1
pyrus_communis	pycom05g27930 pycom10g23420
rosa_chinensis	RchiOBHm_Chr5g0010751
rosa_laevigata	RLG00000031776
rosa_multiflora	Rmu_sc0000109.1_g000024
rosa_roxburghii	Rroxscaffold_1G00065630
rosa_rugosa	Rorug04G0452000 Rorug04G0452000 Rorug04G0452100
rosa_samantha	Rh5AG083800 Rh5BG079000 Rh5CG091800 Rh5DG079200
rosa_wichuraiana	Rw0G000600 Rw0G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccBSI	CCGCTC	1 cut(s)	11
AccII	CGCG	2 cut(s)	26, 28
AciI	CCGC	4 cut(s)	9, 251, 437, 989
AclWI	GGATC	1 cut(s)	1054
AcoI	YGGCCR	1 cut(s)	1382
AcsI	RAATTY	4 cut(s)	217, 763, 1027, 1134
AcuI	CTGAAG	1 cut(s)	1254
AfaI	GTAC	5 cut(s)	279, 465, 575, 891, 1108
AfiI	CCNNNNNNNGG	4 cut(s)	213, 399, 848, 1159
AflIII	ACRYGT	2 cut(s)	570, 1456
AgsI	TTSAA	2 cut(s)	768, 1310
Alw21I	GWGCWC	3 cut(s)	91, 196, 382
Alw26I	GTCTC	3 cut(s)	607, 781, 1121
AlwI	GGATC	1 cut(s)	1054
AoxI	GGCC	4 cut(s)	3, 144, 1216, 1382
ApeKI	GCWGC	5 cut(s)	57, 868, 911, 1238, 1256
ApoI	RAATTY	4 cut(s)	217, 763, 1027, 1134
ArsI	GACNNNNNNTTYG	2 cut(s)	934, 966
Asp700I	GAANNNNTTC	1 cut(s)	1425
AspLEI	GCGC	3 cut(s)	28, 30, 916
AspS9I	GGNCC	1 cut(s)	1217
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	744, 865
AsuNHI	GCTAGC	1 cut(s)	485
BalI	TGGCCA	1 cut(s)	1384
BanII	GRGCYC	3 cut(s)	91, 196, 382
BarI	GAAGNNNNNNTAC	6 cut(s)	131, 163, 296, 328, 504, 536
BbsI	GAAGAC	2 cut(s)	105, 301
Bbv12I	GWGCWC	3 cut(s)	91, 196, 382
BbvI	GCAGC	5 cut(s)	69, 880, 898, 1250, 1268
BccI	CCATC	4 cut(s)	593, 962, 1016, 1338
BceAI	ACGGC	2 cut(s)	88, 1231
BcgI	CGANNNNNNTGC	2 cut(s)	1029, 1063
BclI	TGATCA	2 cut(s)	265, 1087
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	3 cut(s)	607, 781, 1121
BfaI	CTAG	5 cut(s)	92, 300, 486, 533, 689
BglII	AGATCT	1 cut(s)	1055
BisI	GCNGC	5 cut(s)	58, 869, 912, 1239, 1257
BlsI	GCNGC	5 cut(s)	59, 870, 913, 1240, 1258
Bme1390I	CCNGG	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	1217
BmiI	GGNNCC	4 cut(s)	179, 365, 813, 1219
BmrFI	CCNGG	1 cut(s)	592
BmrI	ACTGGG	2 cut(s)	729, 1196
BmsI	GCATC	1 cut(s)	1016
BmtI	GCTAGC	1 cut(s)	489
BmuI	ACTGGG	2 cut(s)	729, 1196
BpiI	GAAGAC	2 cut(s)	105, 301
BpmI	CTGGAG	5 cut(s)	193, 217, 379, 403, 1464
Bpu10I	CCTNAGC	1 cut(s)	1242
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	592
BsaAI	YACGTR	2 cut(s)	508, 573
BsaJI	CCNNGG	4 cut(s)	181, 367, 1287, 1379
Bsc4I	CCNNNNNNNGG	4 cut(s)	213, 399, 848, 1159
Bse118I	RCCGGY	2 cut(s)	803, 1152
Bse1I	ACTGG	6 cut(s)	207, 393, 621, 735, 949, 1202
BseDI	CCNNGG	4 cut(s)	181, 367, 1287, 1379
BseGI	GGATG	2 cut(s)	1112, 1349
BseLI	CCNNNNNNNGG	4 cut(s)	213, 399, 848, 1159
BseMII	CTCAG	2 cut(s)	202, 388
BseNI	ACTGG	6 cut(s)	207, 393, 621, 735, 949, 1202
BsePI	GCGCGC	1 cut(s)	26
BseRI	GAGGAG	4 cut(s)	93, 96, 99, 1137
BseXI	GCAGC	5 cut(s)	69, 880, 898, 1250, 1268
BsgI	GTGCAG	1 cut(s)	1359
Bsh1236I	CGCG	2 cut(s)	26, 28
BshFI	GGCC	4 cut(s)	5, 146, 1218, 1384
BsiHKAI	GWGCWC	3 cut(s)	91, 196, 382
BsiSI	CCGG	3 cut(s)	591, 804, 1153
BslFI	GGGAC	1 cut(s)	1182
BslI	CCNNNNNNNGG	4 cut(s)	213, 399, 848, 1159
BsmAI	GTCTC	3 cut(s)	607, 781, 1121
BsmBI	CGTCTC	1 cut(s)	781
BsmFI	GGGAC	1 cut(s)	1182
BsnI	GGCC	4 cut(s)	5, 146, 1218, 1384
Bsp1286I	GDGCHC	3 cut(s)	91, 196, 382
Bsp143I	GATC	5 cut(s)	265, 451, 1046, 1055, 1087
BspACI	CCGC	4 cut(s)	9, 251, 437, 989
BspANI	GGCC	4 cut(s)	5, 146, 1218, 1384
BspCNI	CTCAG	2 cut(s)	201, 387
BspFNI	CGCG	2 cut(s)	26, 28
BspHI	TCATGA	1 cut(s)	1297
BspLI	GGNNCC	4 cut(s)	179, 365, 813, 1219
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	1054
BspQI	GCTCTTC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	11
BsrFI	RCCGGY	2 cut(s)	803, 1152
BsrI	ACTGG	6 cut(s)	207, 393, 621, 735, 949, 1202
BssAI	RCCGGY	2 cut(s)	803, 1152
BssECI	CCNNGG	4 cut(s)	181, 367, 1287, 1379
BssHII	GCGCGC	1 cut(s)	26
BssMI	GATC	5 cut(s)	265, 451, 1046, 1055, 1087
BssT1I	CCWWGG	4 cut(s)	181, 367, 1287, 1379
Bst4CI	ACNGT	1 cut(s)	1338
Bst6I	CTCTTC	2 cut(s)	136, 157
BstAPI	GCANNNNNTGC	2 cut(s)	640, 1460
BstBAI	YACGTR	2 cut(s)	508, 573
BstC8I	GCNNGC	5 cut(s)	28, 253, 487, 909, 1504
BstDEI	CTNAG	4 cut(s)	188, 374, 676, 1242
BstF5I	GGATG	2 cut(s)	1112, 1349
BstFNI	CGCG	2 cut(s)	26, 28
BstHHI	GCGC	3 cut(s)	28, 30, 916
BstKTI	GATC	5 cut(s)	268, 454, 1049, 1058, 1090
BstMAI	GTCTC	3 cut(s)	607, 781, 1121
BstMBI	GATC	5 cut(s)	265, 451, 1046, 1055, 1087
BstMWI	GCNNNNNNNGC	7 cut(s)	640, 710, 913, 920, 1244, 1253, 1460
BstNSI	RCATGY	1 cut(s)	1178
BstSCI	CCNGG	1 cut(s)	590
BstUI	CGCG	2 cut(s)	26, 28
BstV1I	GCAGC	5 cut(s)	69, 880, 898, 1250, 1268
BstV2I	GAAGAC	2 cut(s)	105, 301
BstX2I	RGATCY	1 cut(s)	1055
BstXI	CCANNNNNNTGG	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	1055
BsuRI	GGCC	4 cut(s)	5, 146, 1218, 1384
BtsCI	GGATG	2 cut(s)	1112, 1349
BtsIMutI	CAGTG	2 cut(s)	742, 963
Cac8I	GCNNGC	5 cut(s)	28, 253, 487, 909, 1504
CciI	TCATGA	1 cut(s)	1297
CfoI	GCGC	3 cut(s)	28, 30, 916
Cfr10I	RCCGGY	2 cut(s)	803, 1152
Cfr13I	GGNCC	1 cut(s)	1217
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	5 cut(s)	278, 464, 574, 890, 1107
CviAII	CATG	7 cut(s)	287, 473, 564, 631, 1175, 1298, 1409
CviQI	GTAC	5 cut(s)	278, 464, 574, 890, 1107
DdeI	CTNAG	4 cut(s)	188, 374, 676, 1242
DpnI	GATC	5 cut(s)	267, 453, 1048, 1057, 1089
DpnII	GATC	5 cut(s)	265, 451, 1046, 1055, 1087
EaeI	YGGCCR	1 cut(s)	1382
Eam1104I	CTCTTC	2 cut(s)	136, 157
EarI	CTCTTC	2 cut(s)	136, 157
Ecl136II	GAGCTC	3 cut(s)	89, 194, 380
Eco130I	CCWWGG	4 cut(s)	181, 367, 1287, 1379
Eco24I	GRGCYC	3 cut(s)	91, 196, 382
Eco53kI	GAGCTC	3 cut(s)	89, 194, 380
Eco57I	CTGAAG	1 cut(s)	1254
EcoICRI	GAGCTC	3 cut(s)	89, 194, 380
EcoT14I	CCWWGG	4 cut(s)	181, 367, 1287, 1379
EcoT38I	GRGCYC	3 cut(s)	91, 196, 382
ErhI	CCWWGG	4 cut(s)	181, 367, 1287, 1379
Esp3I	CGTCTC	1 cut(s)	781
FaeI	CATG	7 cut(s)	290, 476, 567, 634, 1178, 1301, 1412
FaqI	GGGAC	1 cut(s)	1182
FatI	CATG	7 cut(s)	286, 472, 563, 630, 1174, 1297, 1408
FauI	CCCGC	2 cut(s)	244, 430
FauNDI	CATATG	1 cut(s)	1092
FbaI	TGATCA	2 cut(s)	265, 1087
Fnu4HI	GCNGC	5 cut(s)	58, 869, 912, 1239, 1257
FokI	GGATG	2 cut(s)	1099, 1356
FriOI	GRGCYC	3 cut(s)	91, 196, 382
Fsp4HI	GCNGC	5 cut(s)	58, 869, 912, 1239, 1257
FspBI	CTAG	5 cut(s)	92, 300, 486, 533, 689
GlaI	GCGC	3 cut(s)	27, 29, 915
GluI	GCNGC	5 cut(s)	58, 869, 912, 1239, 1257
GsuI	CTGGAG	5 cut(s)	193, 217, 379, 403, 1464
HaeIII	GGCC	4 cut(s)	5, 146, 1218, 1384
HapII	CCGG	3 cut(s)	591, 804, 1153
HgaI	GACGC	1 cut(s)	518
HhaI	GCGC	3 cut(s)	28, 30, 916
Hin1II	CATG	7 cut(s)	290, 476, 567, 634, 1178, 1301, 1412
Hin6I	GCGC	3 cut(s)	26, 28, 914
HinP1I	GCGC	3 cut(s)	26, 28, 914
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	5 cut(s)	48, 186, 372, 1063, 1484
HpaII	CCGG	3 cut(s)	591, 804, 1153
HphI	GGTGA	2 cut(s)	744, 865
Hpy166II	GTNNAC	3 cut(s)	576, 974, 1268
Hpy188I	TCNGA	5 cut(s)	191, 377, 1012, 1062, 1213
Hpy188III	TCNNGA	5 cut(s)	234, 420, 661, 1232, 1298
Hpy8I	GTNNAC	3 cut(s)	576, 974, 1268
Hpy99I	CGWCG	6 cut(s)	72, 103, 109, 112, 121, 124
HpyAV	CCTTC	2 cut(s)	157, 1243
HpyCH4III	ACNGT	1 cut(s)	1338
HpyCH4IV	ACGT	3 cut(s)	507, 572, 1458
HpyCH4V	TGCA	8 cut(s)	557, 567, 634, 643, 704, 1040, 1376, 1454
HpyF10VI	GCNNNNNNNGC	7 cut(s)	640, 710, 913, 920, 1244, 1253, 1460
HpyF3I	CTNAG	4 cut(s)	188, 374, 676, 1242
HpySE526I	ACGT	3 cut(s)	507, 572, 1458
Hsp92II	CATG	7 cut(s)	290, 476, 567, 634, 1178, 1301, 1412
HspAI	GCGC	3 cut(s)	26, 28, 914
Ksp22I	TGATCA	2 cut(s)	265, 1087
Kzo9I	GATC	5 cut(s)	265, 451, 1046, 1055, 1087
LguI	GCTCTTC	1 cut(s)	136
LmnI	GCTCC	5 cut(s)	16, 86, 602, 811, 928
Lsp1109I	GCAGC	5 cut(s)	69, 880, 898, 1250, 1268
LweI	GCATC	1 cut(s)	1016
MaeI	CTAG	5 cut(s)	92, 300, 486, 533, 689
MaeII	ACGT	3 cut(s)	507, 572, 1458
MaeIII	GTNAC	2 cut(s)	35, 826
MalI	GATC	5 cut(s)	267, 453, 1048, 1057, 1089
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	5 cut(s)	265, 451, 1046, 1055, 1087
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	1 cut(s)	1055
MhlI	GDGCHC	3 cut(s)	91, 196, 382
MlsI	TGGCCA	1 cut(s)	1384
MluNI	TGGCCA	1 cut(s)	1384
MlyI	GAGTC	2 cut(s)	180, 366
MmeI	TCCRAC	1 cut(s)	340
Mox20I	TGGCCA	1 cut(s)	1384
MroXI	GAANNNNTTC	1 cut(s)	1425
MscI	TGGCCA	1 cut(s)	1384
MseI	TTAA	2 cut(s)	548, 1140
Msp20I	TGGCCA	1 cut(s)	1384
MspA1I	CMGCKG	1 cut(s)	955
MspI	CCGG	3 cut(s)	591, 804, 1153
MspR9I	CCNGG	1 cut(s)	592
MunI	CAATTG	1 cut(s)	918
MvnI	CGCG	2 cut(s)	26, 28
MwoI	GCNNNNNNNGC	7 cut(s)	640, 710, 913, 920, 1244, 1253, 1460
NciI	CCSGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	1092
NdeII	GATC	5 cut(s)	265, 451, 1046, 1055, 1087
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	7 cut(s)	290, 476, 567, 634, 1178, 1301, 1412
NlaIV	GGNNCC	4 cut(s)	179, 365, 813, 1219
NspI	RCATGY	1 cut(s)	1178
PagI	TCATGA	1 cut(s)	1297
PauI	GCGCGC	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	4 cut(s)	104, 107, 113, 116
PdmI	GAANNNNTTC	1 cut(s)	1425
PfeI	GAWTC	3 cut(s)	48, 1063, 1484
PflMI	CCANNNNNTGG	1 cut(s)	848
PkrI	GCNGC	5 cut(s)	59, 870, 913, 1240, 1258
PleI	GAGTC	2 cut(s)	180, 366
PpsI	GAGTC	2 cut(s)	180, 366
Ppu21I	YACGTR	2 cut(s)	508, 573
Psp124BI	GAGCTC	3 cut(s)	91, 196, 382
PspN4I	GGNNCC	4 cut(s)	179, 365, 813, 1219
PspPI	GGNCC	1 cut(s)	1217
PsuI	RGATCY	1 cut(s)	1055
PteI	GCGCGC	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	955
RsaI	GTAC	5 cut(s)	279, 465, 575, 891, 1108
RsaNI	GTAC	5 cut(s)	278, 464, 574, 890, 1107
SacI	GAGCTC	3 cut(s)	91, 196, 382
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	548, 1140
SatI	GCNGC	5 cut(s)	58, 869, 912, 1239, 1257
Sau3AI	GATC	5 cut(s)	265, 451, 1046, 1055, 1087
Sau96I	GGNCC	1 cut(s)	1217
SchI	GAGTC	2 cut(s)	180, 366
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	3 cut(s)	91, 196, 382
SfaNI	GCATC	1 cut(s)	1016
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SsiI	CCGC	4 cut(s)	9, 251, 437, 989
SspMI	CTAG	5 cut(s)	92, 300, 486, 533, 689
SstI	GAGCTC	3 cut(s)	91, 196, 382
StyD4I	CCNGG	1 cut(s)	590
StyI	CCWWGG	4 cut(s)	181, 367, 1287, 1379
TaaI	ACNGT	1 cut(s)	1338
TaiI	ACGT	3 cut(s)	510, 575, 1461
TaqI	TCGA	3 cut(s)	67, 321, 940
TfiI	GAWTC	3 cut(s)	48, 1063, 1484
Tru1I	TTAA	2 cut(s)	548, 1140
Tru9I	TTAA	2 cut(s)	548, 1140
TscAI	CASTG	2 cut(s)	742, 970
TseI	GCWGC	5 cut(s)	57, 868, 911, 1238, 1256
TspDTI	ATGAA	9 cut(s)	275, 461, 552, 639, 1314, 1329, 1358, 1397, 1434
TspGWI	ACGGA	2 cut(s)	85, 538
TspRI	CASTG	2 cut(s)	742, 970
Van91I	CCANNNNNTGG	1 cut(s)	848
XapI	RAATTY	4 cut(s)	217, 763, 1027, 1134
XceI	RCATGY	1 cut(s)	1178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	1425
XspI	CTAG	5 cut(s)	92, 300, 486, 533, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.