FvH4_3g07820

Putative serine esterase (DUF676)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004186
Physical Location & Seq
Reverse (-)
4600665 .. 4604852
4188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07820.t7

Sequence Viewer

Length: 1326 bp
ATGGCCTCCGCTCCTCTACTTCACGCGCGTTGCGGTTACTCGCCGAGATTCAGTTGCAGCAGTGCTCGTCGGAATGGTGGTGGAGCTCTAGGTTCGTCGCCGTCGTCGTCTTCGTCGTCGTGTTGCTCTTCTTCGTATTTGGCCTTCTCTTCCGGAGCGTATAATAGTTGGAGGAATCAAGGACTGAGAGCTCACGCTATGACGAGTCAGGGAGGTTTCGCTTCTTCCTCCAGAGGTGTTGCCAGTGCGGAGAAGAAGCCTGATCATCTTCTTGTACTTGTTCATGGCATATTGGCTAGCCCGAGTGATTGGACATATGTGGAAGTGGAGTTACGAAAGCGTCTAGGCAGGAACTTTTTAATCTATGCAAGTTCATGTAACATGTACACTAAAACTTTTACCGGGATTGATGGAGCTGGAAAGAGACTGGCAGATGAAGTCATGCAAGTTGTGCAAAAGACAGATAGCCTGAAGAAAATCTCATTTTTAGCCCATTCTCTGGGGGGTTTGTTTGCAAGATACGCAATATCTGTTCTTTACAGACCCAATGATATTCCCGATTCAGCTCTTGTAAATTCAAAAGAAACATACCCTTTGAGACGAGGAAAGATTGCCGGTTTGGAGCCAATCAATTTTGTAACATTGGCGACCCCACATCTTGGGGTGAGGGGGAAAAAGCAGCTACCATTTCTTTTAGGCGTACCATTTTTAGAAAAGTTGGCTGCACCAATTGCTCCTATTGTTGTTGGTCGAACTGGTAGTCAGCTGTTCCTCACTGATGGTAAACCTGAAAGACCACCACTTCTGTTGAGAATGGCATCTGATTGTGAAGATGGAAATTTTTTATCAGCATTGGGGTCGTTTAAATCTCGGATTCTTTATGCTAATGTATCTTATGATCATATGGTTGGTTGGCGTACATCATCCATTAGGAGAGAGACAGAAATTTTGAAGCCTCCTCGACGGTCTTTGGTTGGCTACAAGCATGTTGTAGATGTAGATTATTGTCCCCCAGTTTCGTCTGACGGCCCCCATTTTCCTCCTGAAGCAGCTAAGGCGAAGGAGGCAGCCCAAAGTAAACCCAACCAACAGAACACCTTGGAATATCATGAAATTGTTGAAGATGAAATGATAGGAGGCTTACAACAGTTGGGATGGAAAAAAGTTGATGTCAGCTTTCATTCTGCAGCTTGGCCCTTCTTTGCCCACAACAACATTCATGTGAAAAATGAATGGCTTCACAATGCTGGTGCTGGAGTGGTTGCACACGTTGCTGACACTCTAAAGCAACAAGAATCGTCCTCCACACTGACCGCCAGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF676

Protein Analysis

442

Amino Acids

47.96

Weight (kDa)

9.36

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF676 PF05057 30 - 110 1e-15 Putative serine esterase (DUF676)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 499, 659
AccBSI CCGCTC 1 cut(s) 11
AccII CGCG 2 cut(s) 26, 28
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 4 cut(s) 9, 33, 248, 1314
AcsI RAATTY 3 cut(s) 574, 838, 945
AcuI CTGAAG 2 cut(s) 491, 1065
AfaI GTAC 4 cut(s) 276, 386, 702, 919
AfiI CCNNNNNNNGG 2 cut(s) 499, 659
AflIII ACRYGT 2 cut(s) 381, 1267
AgsI TTSAA 3 cut(s) 579, 952, 1121
Alw21I GWGCWC 3 cut(s) 67, 88, 193
Alw26I GTCTC 3 cut(s) 418, 592, 932
Ama87I CYCGRG 1 cut(s) 301
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 4 cut(s) 3, 141, 1027, 1193
ApeKI GCWGC 6 cut(s) 57, 679, 722, 1049, 1067, 1187
ApoI RAATTY 3 cut(s) 574, 838, 945
ArsI GACNNNNNNTTYG 4 cut(s) 745, 777, 931, 963
Asp700I GAANNNNTTC 1 cut(s) 1236
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 1028, 1194
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 676
AsuNHI GCTAGC 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 301
BanII GRGCYC 2 cut(s) 88, 193
BarI GAAGNNNNNNTAC 4 cut(s) 128, 160, 315, 347
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 3 cut(s) 67, 88, 193
BbvI GCAGC 6 cut(s) 69, 691, 709, 1061, 1079, 1199
BccI CCATC 4 cut(s) 404, 773, 827, 1149
BceAI ACGGC 2 cut(s) 85, 1042
BcgI CGANNNNNNTGC 2 cut(s) 840, 874
BclI TGATCA 2 cut(s) 262, 898
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 3 cut(s) 418, 592, 932
BfaI CTAG 3 cut(s) 89, 297, 344
BfmI CTRYAG 1 cut(s) 1185
BisI GCNGC 6 cut(s) 58, 680, 723, 1050, 1068, 1188
BlsI GCNGC 6 cut(s) 59, 681, 724, 1051, 1069, 1189
Bme1390I CCNGG 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 1028, 1194
BmiI GGNNCC 2 cut(s) 624, 1030
BmrFI CCNGG 1 cut(s) 403
BmrI ACTGGG 1 cut(s) 1007
BmsI GCATC 1 cut(s) 827
BmtI GCTAGC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 1007
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 2 cut(s) 214, 1275
Bpu10I CCTNAGC 1 cut(s) 1053
BpuMI CCSGG 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 1098
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 659
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 4 cut(s) 243, 432, 760, 1013
BseAI TCCGGA 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 1098
BseGI GGATG 2 cut(s) 923, 1160
BseLI CCNNNNNNNGG 2 cut(s) 499, 659
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 4 cut(s) 243, 432, 760, 1013
BseRI GAGGAG 1 cut(s) 948
BseXI GCAGC 6 cut(s) 69, 691, 709, 1061, 1079, 1199
BsgI GTGCAG 1 cut(s) 708
Bsh1236I CGCG 2 cut(s) 26, 28
BshFI GGCC 4 cut(s) 5, 143, 1029, 1195
BsiHKAI GWGCWC 3 cut(s) 67, 88, 193
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 3 cut(s) 153, 402, 615
BslFI GGGAC 1 cut(s) 993
BslI CCNNNNNNNGG 2 cut(s) 499, 659
BsmAI GTCTC 3 cut(s) 418, 592, 932
BsmBI CGTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 993
BsnI GGCC 4 cut(s) 5, 143, 1029, 1195
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 3 cut(s) 67, 88, 193
Bsp13I TCCGGA 1 cut(s) 152
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 2 cut(s) 262, 898
BspACI CCGC 4 cut(s) 9, 33, 248, 1314
BspANI GGCC 4 cut(s) 5, 143, 1029, 1195
BspCNI CTCAG 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 2 cut(s) 26, 28
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 2 cut(s) 624, 1030
BspMAI CTGCAG 1 cut(s) 1189
BspOI GCTAGC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 614
BsrGI TGTACA 1 cut(s) 384
BsrI ACTGG 4 cut(s) 243, 432, 760, 1013
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 1098
BssMI GATC 2 cut(s) 262, 898
BssT1I CCWWGG 1 cut(s) 1098
Bst4CI ACNGT 2 cut(s) 966, 1149
Bst6I CTCTTC 2 cut(s) 133, 154
BstAPI GCANNNNNTGC 3 cut(s) 451, 731, 1271
BstAUI TGTACA 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 298, 1318
BstDEI CTNAG 2 cut(s) 185, 1053
BstF5I GGATG 2 cut(s) 923, 1160
BstFNI CGCG 2 cut(s) 26, 28
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 265, 901
BstMAI GTCTC 3 cut(s) 418, 592, 932
BstMBI GATC 2 cut(s) 262, 898
BstMWI GCNNNNNNNGC 6 cut(s) 451, 521, 731, 1055, 1064, 1271
BstNSI RCATGY 2 cut(s) 385, 989
BstSCI CCNGG 1 cut(s) 401
BstSFI CTRYAG 1 cut(s) 1185
BstUI CGCG 2 cut(s) 26, 28
BstV1I GCAGC 6 cut(s) 69, 691, 709, 1061, 1079, 1199
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 4 cut(s) 5, 143, 1029, 1195
BtsCI GGATG 2 cut(s) 923, 1160
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 4 cut(s) 67, 250, 774, 1307
Cac8I GCNNGC 2 cut(s) 298, 1318
CciI TCATGA 1 cut(s) 1108
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 2 cut(s) 1028, 1194
CseI GACGC 1 cut(s) 329
Csp6I GTAC 4 cut(s) 275, 385, 701, 918
CspCI CAANNNNNGTGG 2 cut(s) 789, 824
CviAII CATG 7 cut(s) 284, 375, 382, 442, 986, 1109, 1220
CviQI GTAC 4 cut(s) 275, 385, 701, 918
DdeI CTNAG 2 cut(s) 185, 1053
DpnI GATC 2 cut(s) 264, 900
DpnII GATC 2 cut(s) 262, 898
DraI TTTAAA 1 cut(s) 865
Eam1104I CTCTTC 2 cut(s) 133, 154
EarI CTCTTC 2 cut(s) 133, 154
Ecl136II GAGCTC 2 cut(s) 86, 191
Eco130I CCWWGG 1 cut(s) 1098
Eco24I GRGCYC 2 cut(s) 88, 193
Eco53kI GAGCTC 2 cut(s) 86, 191
Eco57I CTGAAG 2 cut(s) 491, 1065
Eco88I CYCGRG 1 cut(s) 301
EcoICRI GAGCTC 2 cut(s) 86, 191
EcoT14I CCWWGG 1 cut(s) 1098
EcoT38I GRGCYC 2 cut(s) 88, 193
ErhI CCWWGG 1 cut(s) 1098
Esp3I CGTCTC 1 cut(s) 592
FaeI CATG 7 cut(s) 287, 378, 385, 445, 989, 1112, 1223
FaqI GGGAC 1 cut(s) 993
FatI CATG 7 cut(s) 283, 374, 381, 441, 985, 1108, 1219
FauNDI CATATG 2 cut(s) 316, 903
FbaI TGATCA 2 cut(s) 262, 898
Fnu4HI GCNGC 6 cut(s) 58, 680, 723, 1050, 1068, 1188
FokI GGATG 2 cut(s) 910, 1167
FriOI GRGCYC 2 cut(s) 88, 193
Fsp4HI GCNGC 6 cut(s) 58, 680, 723, 1050, 1068, 1188
FspBI CTAG 3 cut(s) 89, 297, 344
GlaI GCGC 1 cut(s) 27
GluI GCNGC 6 cut(s) 58, 680, 723, 1050, 1068, 1188
GsuI CTGGAG 2 cut(s) 214, 1275
HaeIII GGCC 4 cut(s) 5, 143, 1029, 1195
HapII CCGG 3 cut(s) 153, 402, 615
HgaI GACGC 1 cut(s) 329
HhaI GCGC 1 cut(s) 28
Hin1II CATG 7 cut(s) 287, 378, 385, 445, 989, 1112, 1223
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 6 cut(s) 48, 175, 205, 560, 874, 1295
HpaII CCGG 3 cut(s) 153, 402, 615
HphI GGTGA 1 cut(s) 676
Hpy166II GTNNAC 3 cut(s) 387, 785, 1079
Hpy188I TCNGA 4 cut(s) 72, 823, 873, 1024
Hpy188III TCNNGA 5 cut(s) 153, 231, 557, 1043, 1109
Hpy8I GTNNAC 3 cut(s) 387, 785, 1079
Hpy99I CGWCG 7 cut(s) 72, 100, 106, 109, 118, 121, 966
HpyAV CCTTC 3 cut(s) 154, 1054, 1207
HpyCH4III ACNGT 2 cut(s) 966, 1149
HpyCH4IV ACGT 1 cut(s) 1269
HpyCH4V TGCA 8 cut(s) 57, 368, 445, 454, 515, 725, 1187, 1265
HpyF10VI GCNNNNNNNGC 6 cut(s) 451, 521, 731, 1055, 1064, 1271
HpyF3I CTNAG 2 cut(s) 185, 1053
HpySE526I ACGT 1 cut(s) 1269
Hsp92II CATG 7 cut(s) 287, 378, 385, 445, 989, 1112, 1223
HspAI GCGC 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 152
Ksp22I TGATCA 2 cut(s) 262, 898
Kzo9I GATC 2 cut(s) 262, 898
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 6 cut(s) 16, 83, 155, 413, 622, 739
Lsp1109I GCAGC 6 cut(s) 69, 691, 709, 1061, 1079, 1199
LweI GCATC 1 cut(s) 827
MaeI CTAG 3 cut(s) 89, 297, 344
MaeII ACGT 1 cut(s) 1269
MaeIII GTNAC 4 cut(s) 35, 330, 377, 637
MalI GATC 2 cut(s) 264, 900
MbiI CCGCTC 1 cut(s) 11
MboI GATC 2 cut(s) 262, 898
MfeI CAATTG 1 cut(s) 729
MhlI GDGCHC 3 cut(s) 67, 88, 193
MluCI AATT 6 cut(s) 574, 631, 729, 838, 945, 1113
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 2 cut(s) 50, 149
MroI TCCGGA 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 1236
MseI TTAA 2 cut(s) 359, 864
MslI CAYNNNNRTG 1 cut(s) 1220
MspA1I CMGCKG 1 cut(s) 766
MspI CCGG 3 cut(s) 153, 402, 615
MspR9I CCNGG 1 cut(s) 403
MunI CAATTG 1 cut(s) 729
MvnI CGCG 2 cut(s) 26, 28
MwoI GCNNNNNNNGC 6 cut(s) 451, 521, 731, 1055, 1064, 1271
NciI CCSGG 1 cut(s) 403
NdeI CATATG 2 cut(s) 316, 903
NdeII GATC 2 cut(s) 262, 898
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 7 cut(s) 287, 378, 385, 445, 989, 1112, 1223
NlaIV GGNNCC 2 cut(s) 624, 1030
NmeAIII GCCGAG 1 cut(s) 69
NspI RCATGY 2 cut(s) 385, 989
PagI TCATGA 1 cut(s) 1108
PciI ACATGT 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 4 cut(s) 101, 104, 110, 113
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 5 cut(s) 48, 175, 560, 874, 1295
PflMI CCANNNNNTGG 2 cut(s) 499, 659
PkrI GCNGC 6 cut(s) 59, 681, 724, 1051, 1069, 1189
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PscI ACATGT 1 cut(s) 381
Psp124BI GAGCTC 2 cut(s) 88, 193
PspN4I GGNNCC 2 cut(s) 624, 1030
PspPI GGNCC 2 cut(s) 1028, 1194
PstI CTGCAG 1 cut(s) 1189
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 4 cut(s) 276, 386, 702, 919
RsaNI GTAC 4 cut(s) 275, 385, 701, 918
RseI CAYNNNNRTG 1 cut(s) 1220
SacI GAGCTC 2 cut(s) 88, 193
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 359, 864
SatI GCNGC 6 cut(s) 58, 680, 723, 1050, 1068, 1188
Sau3AI GATC 2 cut(s) 262, 898
Sau96I GGNCC 2 cut(s) 1028, 1194
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 3 cut(s) 67, 88, 193
SfaNI GCATC 1 cut(s) 827
SfcI CTRYAG 1 cut(s) 1185
SmiMI CAYNNNNRTG 1 cut(s) 1220
Sse9I AATT 6 cut(s) 574, 631, 729, 838, 945, 1113
SsiI CCGC 4 cut(s) 9, 33, 248, 1314
SspMI CTAG 3 cut(s) 89, 297, 344
SstI GAGCTC 2 cut(s) 88, 193
StyD4I CCNGG 1 cut(s) 401
StyI CCWWGG 1 cut(s) 1098
TaaI ACNGT 2 cut(s) 966, 1149
TaiI ACGT 1 cut(s) 1272
TaqI TCGA 2 cut(s) 751, 961
TasI AATT 6 cut(s) 574, 631, 729, 838, 945, 1113
TatI WGTACW 2 cut(s) 274, 384
TfiI GAWTC 5 cut(s) 48, 175, 560, 874, 1295
Tru1I TTAA 2 cut(s) 359, 864
Tru9I TTAA 2 cut(s) 359, 864
TscAI CASTG 4 cut(s) 67, 250, 781, 1314
TseI GCWGC 6 cut(s) 57, 679, 722, 1049, 1067, 1187
TspDTI ATGAA 8 cut(s) 272, 363, 450, 1125, 1140, 1169, 1208, 1245
TspRI CASTG 4 cut(s) 67, 250, 781, 1314
Van91I CCANNNNNTGG 2 cut(s) 499, 659
XapI RAATTY 3 cut(s) 574, 838, 945
XceI RCATGY 2 cut(s) 385, 989
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 3 cut(s) 89, 297, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.