Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004186

Physical Location & Seq

Genomic Coordinates Forward (+)

2897770 .. 2902589

Gene Structure 4820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G060900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCATCCGCTTCTCTGATTCACGCACGCTTTGGTTACTCTACGAGATTCAGTGATAATCGACGATATGGTTCGCAGGGACCTGTAGGCTCTTCGTCTTCGTCTTGTTGCTCTTCGTCTCTGGGCTTTTCTTCTGGGTTATATAGTTGTTGGAGAAACCAGGGCCTTAGAGCTCAAGCTATGACTAGTCAGGGAAATTTTGCATCAGCCTCCGGGGGTGTTGCAAGTGCAGGGAATAAGCCTGATCATCTTCTCGTCCTTGTTCATGGCATCTTGGCAAGCCCAAGTGACTGGACATATGGGGAAGCTGAGTTACGAAGGCGTCTTGGAAGAAATTTCCTAATTTATGCTAGTTCATCTAACACGTACACTAAAACTTTTACCGGGATTGATGGAGCTGGAAAACGATTAGCAGATGAGGTCATGCAAGTTGTGCAAAAGACAGAGAGCTTGAAGAAGATCTCATTTTTAGCCCATTCTCTCGGGGGCTTGTTTGCAAGATATGCAATTTCTGTCCTTTACACACCCGACGATGGTGCCAATACAACAATTGCAAATTCACAAACAGCATACTCTTGGAGACGAGGAAAGATTGCTGGTTTGGAGCCAATCAATTTTGTAACATTGGCAACTCCACATCTTGGGGTGAGAGGGAAAAAACAGCTGCCGTTTCTATTCGGAGTACCTTTCTTGGAAAAGCTTGCTGCTCCGATTGCTCCTATTATTGTTGGTAGAACTGGTAGTCAGTTGTTCCTCACTGATGGTAAGCCTGAGAAACCTCCGCTTCTTTTGAGAATGGCATCTGATTGTGACGACGGAAAATTTGTATCTGCTTTGGGGTCTTTTAAATGTCGCATTCTTTACGCTAATGTATCTTATGATCATATGGTTGGTTGGCGCACATCATCAATTAGGAGGGAAACAGAAGTTTTTAAGCCCCCCCGCCGGTCTTTGGATGGCTACAAGCATGTTGTAGATGTGGAGTACTATCCCCCGGTCTCCTCTGATGGTCCCCATTTTCCTCCTGAAGCAGCTAAAGCAAAGGAGGCTGCCCAGAGTGAACCCAACACACAGAACACATTGGAATATCATGAAATTGTTGAAGAGGAAATGATACGCGGCTTACAGCAGTTAGGATGGAAAAAAGTTGATGTCAGCTTTCATTCAGCATTTTGGCCCTTCTTTGCCCATAACAACATTCATGTGAAAAATGAATGGCTCCACAATGCTGGTACCGGAGTGGTCGCTCACGTCGCTGACAGCCTAAAGCAACAAGAATCCTCTTCATTTATCACCGCCAGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF676

Protein Analysis

436

Amino Acids

47.61

Weight (kDa)

9.19

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29120 AT1G29120 AT1G29120 AT1G29120 AT1G29120 AT1G29120 AT1G29120 AT1G29120
fragaria_vesca	FvH4_3g07820 FvH4_3g07820 FvH4_3g07820 FvH4_3g07820 FvH4_3g07820 FvH4_3g07820 FvH4_3g07820
malus_domestica	MD05G1301500.v1.1 MD10G1280400.v1.1
prunus_persica	Prupe.4G060900_v2.0.a1
pyrus_communis	pycom05g27930 pycom10g23420
rosa_chinensis	RchiOBHm_Chr5g0010751
rosa_laevigata	RLG00000031776
rosa_multiflora	Rmu_sc0000109.1_g000024
rosa_roxburghii	Rroxscaffold_1G00065630
rosa_rugosa	Rorug04G0452000 Rorug04G0452000 Rorug04G0452100
rosa_samantha	Rh5AG083800 Rh5BG079000 Rh5CG091800 Rh5DG079200
rosa_wichuraiana	Rw0G000600 Rw0G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1232
AccB1I	GGYRCC	2 cut(s)	536, 1232
AccB7I	CCANNNNNTGG	1 cut(s)	641
AccII	CGCG	1 cut(s)	1119
AciI	CCGC	5 cut(s)	9, 782, 943, 1119, 1296
AcsI	RAATTY	4 cut(s)	196, 334, 556, 821
AcuI	CTGAAG	1 cut(s)	1047
AcyI	GRCGYC	1 cut(s)	322
AfaI	GTAC	4 cut(s)	368, 684, 986, 1234
AfiI	CCNNNNNNNGG	4 cut(s)	533, 641, 945, 952
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	454, 1103
AhlI	ACTAGT	1 cut(s)	185
AjiI	CACGTC	1 cut(s)	1252
AjnI	CCWGG	1 cut(s)	159
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	3 cut(s)	123, 574, 1003
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	2 cut(s)	163, 1175
ApeKI	GCWGC	4 cut(s)	664, 704, 1031, 1049
ApoI	RAATTY	4 cut(s)	196, 334, 556, 821
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp718I	GGTACC	1 cut(s)	1232
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	4 cut(s)	80, 163, 1010, 1176
AsuC2I	CCSGG	3 cut(s)	214, 385, 995
AsuHPI	GGTGA	2 cut(s)	658, 1285
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	80, 1010
BaeI	ACNNNNGTAYC	2 cut(s)	1224, 1257
BanI	GGYRCC	2 cut(s)	536, 1232
BanII	GRGCYC	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	4 cut(s)	651, 691, 1036, 1043
BccI	CCATC	6 cut(s)	386, 527, 755, 950, 1001, 1131
BceAI	ACGGC	1 cut(s)	652
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	161
BclI	TGATCA	2 cut(s)	244, 880
BcnI	CCSGG	3 cut(s)	214, 385, 995
BcoDI	GTCTC	3 cut(s)	123, 574, 1003
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	2 cut(s)	186, 351
BfmI	CTRYAG	1 cut(s)	84
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	5 cut(s)	665, 705, 1032, 1050, 1120
BlsI	GCNGC	5 cut(s)	666, 706, 1033, 1051, 1121
BmcAI	AGTACT	1 cut(s)	986
Bme1390I	CCNGG	4 cut(s)	161, 214, 385, 995
Bme18I	GGWCC	2 cut(s)	80, 1010
BmeT110I	CYCGRG	1 cut(s)	482
BmgBI	CACGTC	1 cut(s)	1252
BmgT120I	GGNCC	4 cut(s)	80, 163, 1010, 1176
BmiI	GGNNCC	6 cut(s)	81, 538, 606, 1012, 1220, 1234
BmrFI	CCNGG	4 cut(s)	161, 214, 385, 995
BmsI	GCATC	4 cut(s)	14, 212, 279, 809
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	159
BpuMI	CCSGG	3 cut(s)	214, 385, 995
BsaAI	YACGTR	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	1003
BsaJI	CCNNGG	3 cut(s)	160, 213, 993
BsaWI	WCCGGW	1 cut(s)	1235
Bsc4I	CCNNNNNNNGG	4 cut(s)	533, 641, 945, 952
Bse118I	RCCGGY	1 cut(s)	945
Bse1I	ACTGG	2 cut(s)	296, 742
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	160, 213, 993
BseGI	GGATG	3 cut(s)	5, 961, 1142
BseLI	CCNNNNNNNGG	4 cut(s)	533, 641, 945, 952
BseMII	CTCAG	2 cut(s)	300, 762
BseNI	ACTGG	2 cut(s)	296, 742
BseRI	GAGGAG	1 cut(s)	991
BseXI	GCAGC	4 cut(s)	651, 691, 1036, 1043
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	1119
BshFI	GGCC	2 cut(s)	165, 1177
BshNI	GGYRCC	2 cut(s)	536, 1232
BsiHKAI	GWGCWC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	5 cut(s)	213, 384, 946, 995, 1236
BslFI	GGGAC	2 cut(s)	93, 996
BslI	CCNNNNNNNGG	4 cut(s)	533, 641, 945, 952
BsmAI	GTCTC	3 cut(s)	123, 574, 1003
BsmBI	CGTCTC	2 cut(s)	123, 574
BsmFI	GGGAC	2 cut(s)	93, 996
BsmI	GAATGC	1 cut(s)	855
BsnI	GGCC	2 cut(s)	165, 1177
Bso31I	GGTCTC	1 cut(s)	1003
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	244, 459, 880
BspACI	CCGC	5 cut(s)	9, 782, 943, 1119, 1296
BspANI	GGCC	2 cut(s)	165, 1177
BspCNI	CTCAG	2 cut(s)	301, 763
BspFNI	CGCG	1 cut(s)	1119
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	6 cut(s)	81, 538, 606, 1012, 1220, 1234
BspQI	GCTCTTC	2 cut(s)	97, 118
BspT107I	GGYRCC	2 cut(s)	536, 1232
BspTNI	GGTCTC	1 cut(s)	1003
BsrFI	RCCGGY	1 cut(s)	945
BsrI	ACTGG	2 cut(s)	296, 742
BssAI	RCCGGY	1 cut(s)	945
BssECI	CCNNGG	3 cut(s)	160, 213, 993
BssMI	GATC	3 cut(s)	244, 459, 880
BssNI	GRCGYC	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	4 cut(s)	97, 118, 1098, 1288
BstACI	GRCGYC	1 cut(s)	322
BstAPI	GCANNNNNTGC	2 cut(s)	433, 503
BstBAI	YACGTR	1 cut(s)	366
BstC8I	GCNNGC	4 cut(s)	28, 280, 702, 1300
BstDEI	CTNAG	3 cut(s)	167, 309, 771
BstF5I	GGATG	3 cut(s)	5, 961, 1142
BstFNI	CGCG	1 cut(s)	1119
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	3 cut(s)	247, 462, 883
BstMAI	GTCTC	3 cut(s)	123, 574, 1003
BstMBI	GATC	3 cut(s)	244, 459, 880
BstMWI	GCNNNNNNNGC	6 cut(s)	433, 503, 713, 1037, 1046, 1253
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	4 cut(s)	159, 212, 383, 993
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	1119
BstV1I	GCAGC	4 cut(s)	651, 691, 1036, 1043
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	459
BstXI	CCANNNNNNTGG	2 cut(s)	291, 1229
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	165, 1177
BtrI	CACGTC	1 cut(s)	1252
BtsCI	GGATG	3 cut(s)	5, 961, 1142
BtsIMutI	CAGTG	2 cut(s)	58, 756
Cac8I	GCNNGC	4 cut(s)	28, 280, 702, 1300
CciI	TCATGA	1 cut(s)	1090
CfoI	GCGC	1 cut(s)	900
Cfr10I	RCCGGY	1 cut(s)	945
Cfr13I	GGNCC	4 cut(s)	80, 163, 1010, 1176
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	4 cut(s)	367, 683, 985, 1233
CviAII	CATG	5 cut(s)	266, 424, 968, 1091, 1202
CviQI	GTAC	4 cut(s)	367, 683, 985, 1233
DdeI	CTNAG	3 cut(s)	167, 309, 771
DpnI	GATC	3 cut(s)	246, 461, 882
DpnII	GATC	3 cut(s)	244, 459, 880
DraI	TTTAAA	1 cut(s)	847
Eam1104I	CTCTTC	4 cut(s)	97, 118, 1098, 1288
EarI	CTCTTC	4 cut(s)	97, 118, 1098, 1288
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	1003
Eco47I	GGWCC	2 cut(s)	80, 1010
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	1047
Eco88I	CYCGRG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	173
EcoO109I	RGGNCCY	2 cut(s)	80, 163
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	175
Esp3I	CGTCTC	2 cut(s)	123, 574
FaeI	CATG	5 cut(s)	269, 427, 971, 1094, 1205
FaqI	GGGAC	2 cut(s)	93, 996
FatI	CATG	5 cut(s)	265, 423, 967, 1090, 1201
FauI	CCCGC	1 cut(s)	950
FauNDI	CATATG	2 cut(s)	298, 885
FbaI	TGATCA	2 cut(s)	244, 880
Fnu4HI	GCNGC	5 cut(s)	665, 705, 1032, 1050, 1120
FokI	GGATG	2 cut(s)	968, 1149
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	5 cut(s)	665, 705, 1032, 1050, 1120
FspBI	CTAG	2 cut(s)	186, 351
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	5 cut(s)	665, 705, 1032, 1050, 1120
HaeIII	GGCC	2 cut(s)	165, 1177
HapII	CCGG	5 cut(s)	213, 384, 946, 995, 1236
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	900
Hin1I	GRCGYC	1 cut(s)	322
Hin1II	CATG	5 cut(s)	269, 427, 971, 1094, 1205
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	3 cut(s)	19, 48, 1277
HpaII	CCGG	5 cut(s)	213, 384, 946, 995, 1236
HphI	GGTGA	2 cut(s)	658, 1285
Hpy166II	GTNNAC	2 cut(s)	369, 1061
Hpy188I	TCNGA	5 cut(s)	18, 680, 711, 805, 1006
Hpy188III	TCNNGA	2 cut(s)	1025, 1091
Hpy8I	GTNNAC	2 cut(s)	369, 1061
Hpy99I	CGWCG	4 cut(s)	66, 533, 818, 1256
HpyAV	CCTTC	2 cut(s)	312, 1189
HpyCH4IV	ACGT	2 cut(s)	365, 1251
HpyCH4V	TGCA	8 cut(s)	203, 224, 230, 427, 436, 497, 506, 554
HpyF10VI	GCNNNNNNNGC	6 cut(s)	433, 503, 713, 1037, 1046, 1253
HpyF3I	CTNAG	3 cut(s)	167, 309, 771
HpySE526I	ACGT	2 cut(s)	365, 1251
Hsp92I	GRCGYC	1 cut(s)	322
Hsp92II	CATG	5 cut(s)	269, 427, 971, 1094, 1205
HspAI	GCGC	1 cut(s)	898
KpnI	GGTACC	1 cut(s)	1236
Ksp22I	TGATCA	2 cut(s)	244, 880
Kzo9I	GATC	3 cut(s)	244, 459, 880
LguI	GCTCTTC	2 cut(s)	97, 118
LmnI	GCTCC	5 cut(s)	395, 604, 712, 721, 1224
Lsp1109I	GCAGC	4 cut(s)	651, 691, 1036, 1043
LweI	GCATC	4 cut(s)	14, 212, 279, 809
MaeI	CTAG	2 cut(s)	186, 351
MaeII	ACGT	2 cut(s)	365, 1251
MaeIII	GTNAC	5 cut(s)	35, 287, 312, 619, 809
MalI	GATC	3 cut(s)	246, 461, 882
MboI	GATC	3 cut(s)	244, 459, 880
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	131
MseI	TTAA	2 cut(s)	846, 933
MslI	CAYNNNNRTG	1 cut(s)	1202
MspA1I	CMGCKG	1 cut(s)	664
MspI	CCGG	5 cut(s)	213, 384, 946, 995, 1236
MspR9I	CCNGG	4 cut(s)	161, 214, 385, 995
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	1119
MwoI	GCNNNNNNNGC	6 cut(s)	433, 503, 713, 1037, 1046, 1253
NciI	CCSGG	3 cut(s)	214, 385, 995
NdeI	CATATG	2 cut(s)	298, 885
NdeII	GATC	3 cut(s)	244, 459, 880
NlaIII	CATG	5 cut(s)	269, 427, 971, 1094, 1205
NlaIV	GGNNCC	6 cut(s)	81, 538, 606, 1012, 1220, 1234
NmuCI	GTSAC	2 cut(s)	287, 809
NspI	RCATGY	1 cut(s)	971
PagI	TCATGA	1 cut(s)	1090
PciSI	GCTCTTC	2 cut(s)	97, 118
PctI	GAATGC	1 cut(s)	855
PfeI	GAWTC	3 cut(s)	19, 48, 1277
PflMI	CCANNNNNTGG	1 cut(s)	641
PkrI	GCNGC	5 cut(s)	666, 706, 1033, 1051, 1121
Ppu21I	YACGTR	1 cut(s)	366
PpuMI	RGGWCCY	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	6 cut(s)	81, 538, 606, 1012, 1220, 1234
PspPI	GGNCC	4 cut(s)	80, 163, 1010, 1176
PspPPI	RGGWCCY	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	664
RsaI	GTAC	4 cut(s)	368, 684, 986, 1234
RsaNI	GTAC	4 cut(s)	367, 683, 985, 1233
RseI	CAYNNNNRTG	1 cut(s)	1202
SacI	GAGCTC	1 cut(s)	175
SapI	GCTCTTC	2 cut(s)	97, 118
SaqAI	TTAA	2 cut(s)	846, 933
SatI	GCNGC	5 cut(s)	665, 705, 1032, 1050, 1120
Sau3AI	GATC	3 cut(s)	244, 459, 880
Sau96I	GGNCC	4 cut(s)	80, 163, 1010, 1176
ScaI	AGTACT	1 cut(s)	986
ScrFI	CCNGG	4 cut(s)	161, 214, 385, 995
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	4 cut(s)	14, 212, 279, 809
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	80, 1010
SmiMI	CAYNNNNRTG	1 cut(s)	1202
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	185
SsiI	CCGC	5 cut(s)	9, 782, 943, 1119, 1296
SspMI	CTAG	2 cut(s)	186, 351
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	4 cut(s)	159, 212, 383, 993
TaiI	ACGT	2 cut(s)	368, 1254
TaqI	TCGA	1 cut(s)	61
TatI	WGTACW	1 cut(s)	984
TauI	GCSGC	1 cut(s)	1122
TfiI	GAWTC	3 cut(s)	19, 48, 1277
Tru1I	TTAA	2 cut(s)	846, 933
Tru9I	TTAA	2 cut(s)	846, 933
TscAI	CASTG	2 cut(s)	58, 763
TseFI	GTSAC	2 cut(s)	287, 809
TseI	GCWGC	4 cut(s)	664, 704, 1031, 1049
Tsp45I	GTSAC	2 cut(s)	287, 809
TspDTI	ATGAA	7 cut(s)	254, 345, 1107, 1151, 1190, 1227, 1275
TspGWI	ACGGA	1 cut(s)	831
TspRI	CASTG	2 cut(s)	58, 763
Van91I	CCANNNNNTGG	1 cut(s)	641
VpaK11BI	GGWCC	2 cut(s)	80, 1010
XapI	RAATTY	4 cut(s)	196, 334, 556, 821
XceI	RCATGY	1 cut(s)	971
XspI	CTAG	2 cut(s)	186, 351
ZrmI	AGTACT	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.