Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Reverse (-)

10297750 .. 10300073

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTACAGGAATATCCTCTGATCTCCACCTCCATCCTAGAGCTCTGAATTTCTCCAAAACCTCCAAATCTGGTTTAAGCAATCGAAAGGTGTCTTTTTCAAGTGTCGGGTATGCTCAGAACAGGAAATTGAGCTGCAGTGTTTCCAGCACAGAGAATGTAGCTCCTAAGGATGATGACAGAGGAAAGGATAGACCTTTGGTTAAGATGTGTGGCATCACATCAGCCAGAGATGCAGCTATGGCAGTTGAGGCTGGTGCTGATTTCATTGGGATGATTATTTGGCCACATTCAAAACGATCCATTTCTCTTTCTGTTGCAAAGGATATTTCCCAAGTGGCCAGGGAAGGTGGGGCCAAACCTGTTGGTGTTTTTGTTGAAGATGATGAGAACACGATACTCAGAGCAGCTGATTCCTCTGACCTTGAGCTTGTGCAGCTTCATGGTAATAGTTCACGTGCTGCTTTCTCGAGGTTAGTACGGGAAAGGAAAGTCATATATGTCCTTAATGCAAATGAGGATGGAAAGCTCCTGAATGTAGTTCCTGAAGAGGATGGTCATCTCGCTGATTGGATTCTTGTGGATAGTGCAACGGGTGGGAGGTTCAATCATAACAATTTTCTGCTGTGGAAAAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

213

Amino Acids

23.22

Weight (kDa)

8.55

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRAI	PF00697	68 - 200	2.1e-16	N-(5'phosphoribosyl)anthranilate (PRA) isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	2 cut(s)	284, 339
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	567
AcvI	CACGTG	1 cut(s)	458
AfaI	GTAC	1 cut(s)	480
AgsI	TTSAA	4 cut(s)	102, 294, 380, 607
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	8 cut(s)	44, 135, 164, 239, 410, 430, 439, 529
AluI	AGCT	8 cut(s)	44, 135, 164, 239, 410, 430, 439, 529
Alw21I	GWGCWC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	469
AoxI	GGCC	3 cut(s)	284, 339, 354
ApeKI	GCWGC	5 cut(s)	135, 236, 407, 436, 461
ApoI	RAATTY	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	354
AvaI	CYCGRG	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	168
BalI	TGGCCA	2 cut(s)	286, 341
BanII	GRGCYC	1 cut(s)	46
BbrPI	CACGTG	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	5 cut(s)	122, 248, 419, 448, 448
BccI	CCATC	3 cut(s)	42, 515, 548
BciT130I	CCWGG	1 cut(s)	343
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	2 cut(s)	6, 136
BisI	GCNGC	5 cut(s)	136, 237, 408, 437, 462
BlsI	GCNGC	5 cut(s)	137, 238, 409, 438, 463
Bme1390I	CCNGG	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	223, 225
BpuEI	CTTGAG	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	342
Bse21I	CCTNAGG	1 cut(s)	168
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	5 cut(s)	34, 178, 279, 526, 559
BseJI	GATNNNNATC	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	131, 415
BseXI	GCAGC	5 cut(s)	122, 248, 419, 448, 448
BsgI	GTGCAG	1 cut(s)	455
BshFI	GGCC	3 cut(s)	286, 341, 356
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	469
BsnI	GGCC	3 cut(s)	286, 341, 356
BsoBI	CYCGRG	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	22, 299
BspANI	GGCC	3 cut(s)	286, 341, 356
BspCNI	CTCAG	2 cut(s)	130, 414
BspLI	GGNNCC	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	22, 299
Bst2UI	CCWGG	1 cut(s)	343
Bst6I	CTCTTC	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	458
BstDEI	CTNAG	3 cut(s)	117, 168, 401
BstF5I	GGATG	5 cut(s)	34, 178, 279, 526, 559
BstKTI	GATC	2 cut(s)	25, 302
BstMBI	GATC	2 cut(s)	22, 299
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 242, 251, 436
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	2 cut(s)	6, 136
BstV1I	GCAGC	5 cut(s)	122, 248, 419, 448, 448
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	286, 341, 356
BtsCI	GGATG	5 cut(s)	34, 178, 279, 526, 559
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	1 cut(s)	443
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	3 cut(s)	117, 168, 401
DpnI	GATC	2 cut(s)	24, 301
DpnII	GATC	2 cut(s)	22, 299
EaeI	YGGCCR	2 cut(s)	284, 339
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Ecl136II	GAGCTC	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	567
Eco72I	CACGTG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	1 cut(s)	446
FaiI	YATR	7 cut(s)	114, 242, 444, 497, 499, 501, 612
FatI	CATG	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	136, 237, 408, 437, 462
FokI	GGATG	5 cut(s)	21, 185, 286, 533, 566
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	5 cut(s)	136, 237, 408, 437, 462
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	5 cut(s)	136, 237, 408, 437, 462
HaeIII	GGCC	3 cut(s)	286, 341, 356
Hin1II	CATG	1 cut(s)	446
HinfI	GANTC	2 cut(s)	413, 574
Hpy166II	GTNNAC	2 cut(s)	6, 455
Hpy188I	TCNGA	5 cut(s)	22, 48, 120, 404, 421
Hpy188III	TCNNGA	3 cut(s)	469, 532, 545
Hpy8I	GTNNAC	2 cut(s)	6, 455
HpyAV	CCTTC	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	6 cut(s)	138, 236, 320, 436, 512, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 242, 251, 436
HpyF3I	CTNAG	3 cut(s)	117, 168, 401
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	446
Kzo9I	GATC	2 cut(s)	22, 299
LmnI	GCTCC	2 cut(s)	169, 534
Lsp1109I	GCAGC	5 cut(s)	122, 248, 419, 448, 448
LweI	GCATC	2 cut(s)	223, 225
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	457
MalI	GATC	2 cut(s)	24, 301
MboI	GATC	2 cut(s)	22, 299
MboII	GAAGA	2 cut(s)	392, 560
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	2 cut(s)	286, 341
MluCI	AATT	3 cut(s)	49, 128, 616
MluNI	TGGCCA	2 cut(s)	286, 341
Mox20I	TGGCCA	2 cut(s)	286, 341
MscI	TGGCCA	2 cut(s)	286, 341
MseI	TTAA	4 cut(s)	77, 204, 507, 640
MslI	CAYNNNNRTG	1 cut(s)	272
Msp20I	TGGCCA	2 cut(s)	286, 341
MspA1I	CMGCKG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	4 cut(s)	233, 242, 251, 436
NdeII	GATC	2 cut(s)	22, 299
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	413, 574
PkrI	GCNGC	5 cut(s)	137, 238, 409, 438, 463
PmaCI	CACGTG	1 cut(s)	458
PmlI	CACGTG	1 cut(s)	458
Ppu21I	YACGTR	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	341
PspCI	CACGTG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	4 cut(s)	77, 204, 507, 640
SatI	GCNGC	5 cut(s)	136, 237, 408, 437, 462
Sau3AI	GATC	2 cut(s)	22, 299
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	223, 225
SfcI	CTRYAG	2 cut(s)	6, 136
Sfr274I	CTCGAG	1 cut(s)	469
SlaI	CTCGAG	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	425, 469
SmoI	CTYRAG	2 cut(s)	425, 469
Sse9I	AATT	3 cut(s)	49, 128, 616
SspMI	CTAG	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	341
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	2 cut(s)	85, 470
TasI	AATT	3 cut(s)	49, 128, 616
TfiI	GAWTC	2 cut(s)	413, 574
Tru1I	TTAA	4 cut(s)	77, 204, 507, 640
Tru9I	TTAA	4 cut(s)	77, 204, 507, 640
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	5 cut(s)	135, 236, 407, 436, 461
TspDTI	ATGAA	2 cut(s)	256, 431
TspRI	CASTG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.