Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Reverse (-)

7936470 .. 7937865

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTCGCAGGATTAGTTACTGGAAGCTACTTTCAGCCTGGAGTCGTTAAAATTGGTGGCCCAAGGCAAATTTCTGGTTTGAAGCAGGACTTATTGTGCTTGTCAAGTGCCAAGGTGTCTAGAATTGCATGCAGAGTTGCCAAGGAGGATGATGCCTCCTATCAGCATGAGGAACTTAGAAAGAAACGGCCTTTGGTTAAGATGTGTGGCATTACATCTGCAAGAGATGCAGCAATGGCAGCAGAAGCTGGTGCCGATTTTATTGGGATGATCATTTGGCCCAACTCTAAACGCTCAGTTTCACTTTCGGTTGCAAAGGAGATTTCGAGAGCTGCAAGGGAGTATGGGGCACAGCCTGTTGGGGTGTTTGTGGATGACGATGCGGACACAATACTAAGAGCCTCTGATGCAGCAGACCTTGAATTTGTTCAGCTTCATGGAGATGGTTCCCGTGCTGCTTTTCCGGCATTAGTCCAAAAGAACCGTATAATATATGTTCTTCATGCTAATGAAGATGGAACACTCTTGAACCAAATTTCTAATGAAGAGTGTTCTCTAGTTGATTGGGTTCTTGTGGATGGTGCAAAGGGTGGCAGTGGCAAAGGATTCAATTGGACACAGTTTAAGCTACCAAGTATTAGAAGCAAGCATGGTTGGCTTTTGGCAGGAGGGATAAAACCAGAGAATGCTTCTGAGGCTCTTTCTACCCTCAAACCCCAAGGAATTGATGTTAGTAGTGGCATTTGTGGCCAAGATGGCATCCAGAAAGATCCGTTGCGAATATCTTCATTCATGAGTGCAGTACATACAGTAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

274

Amino Acids

29.27

Weight (kDa)

7.64

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRAI	PF00697	66 - 265	1e-35	N-(5'phosphoribosyl)anthranilate (PRA) isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	1 cut(s)	383
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	3 cut(s)	69, 422, 534
AfaI	GTAC	1 cut(s)	804
AgsI	TTSAA	4 cut(s)	82, 422, 529, 610
AjnI	CCWGG	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	4 cut(s)	55, 87, 176, 208
AluBI	AGCT	5 cut(s)	27, 248, 332, 433, 628
AluI	AGCT	5 cut(s)	27, 248, 332, 433, 628
AlwI	GGATC	1 cut(s)	764
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	4 cut(s)	58, 188, 278, 748
ApeKI	GCWGC	5 cut(s)	230, 239, 332, 410, 455
ApoI	RAATTY	3 cut(s)	69, 422, 534
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
Asp700I	GAANNNNTTC	2 cut(s)	426, 784
AspS9I	GGNCC	2 cut(s)	59, 279
BaeGI	GKGCMC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	251
BbvI	GCAGC	5 cut(s)	242, 251, 319, 422, 442
BccI	CCATC	4 cut(s)	437, 509, 572, 749
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	2 cut(s)	120, 557
BglI	GCCNNNNNGGC	1 cut(s)	756
BisI	GCNGC	5 cut(s)	231, 240, 333, 411, 456
BlsI	GCNGC	5 cut(s)	232, 241, 334, 412, 457
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	59, 279
BmiI	GGNNCC	2 cut(s)	253, 448
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	5 cut(s)	142, 217, 370, 397, 768
BpmI	CTGGAG	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	62, 111, 141, 718
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	4 cut(s)	62, 111, 141, 718
BseGI	GGATG	5 cut(s)	154, 273, 379, 583, 759
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	309, 684
BseNI	ACTGG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	5 cut(s)	242, 251, 319, 422, 442
BsgI	GTGCAG	1 cut(s)	819
BshFI	GGCC	4 cut(s)	60, 190, 280, 750
BshNI	GGYRCC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	4 cut(s)	60, 190, 280, 750
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	270, 769
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	4 cut(s)	60, 190, 280, 750
BspCNI	CTCAG	2 cut(s)	308, 685
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	253, 448
BspPI	GGATC	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	4 cut(s)	62, 111, 141, 718
BssMI	GATC	2 cut(s)	270, 769
BssT1I	CCWWGG	4 cut(s)	62, 111, 141, 718
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	3 cut(s)	485, 621, 811
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	6, 130, 647
BstDEI	CTNAG	4 cut(s)	176, 295, 395, 693
BstF5I	GGATG	5 cut(s)	154, 273, 379, 583, 759
BstKTI	GATC	2 cut(s)	273, 772
BstMBI	GATC	2 cut(s)	270, 769
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	5 cut(s)	242, 251, 319, 422, 442
BstX2I	RGATCY	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	4 cut(s)	60, 190, 280, 750
BtsCI	GGATG	5 cut(s)	154, 273, 379, 583, 759
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	3 cut(s)	6, 130, 647
CaiI	CAGNNNCTG	1 cut(s)	248
CciI	TCATGA	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	59, 279
Csp6I	GTAC	1 cut(s)	803
CviAII	CATG	6 cut(s)	129, 167, 437, 503, 650, 793
CviQI	GTAC	1 cut(s)	803
DdeI	CTNAG	4 cut(s)	176, 295, 395, 693
DpnI	GATC	2 cut(s)	272, 771
DpnII	GATC	2 cut(s)	270, 769
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	4 cut(s)	62, 111, 141, 718
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	4 cut(s)	62, 111, 141, 718
ErhI	CCWWGG	4 cut(s)	62, 111, 141, 718
FaeI	CATG	6 cut(s)	132, 170, 440, 506, 653, 796
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	6 cut(s)	128, 166, 436, 502, 649, 792
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	5 cut(s)	231, 240, 333, 411, 456
FokI	GGATG	5 cut(s)	161, 280, 386, 590, 746
Fsp4HI	GCNGC	5 cut(s)	231, 240, 333, 411, 456
FspBI	CTAG	2 cut(s)	120, 557
GluI	GCNGC	5 cut(s)	231, 240, 333, 411, 456
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	4 cut(s)	60, 190, 280, 750
HapII	CCGG	1 cut(s)	464
Hin1II	CATG	6 cut(s)	132, 170, 440, 506, 653, 796
HinfI	GANTC	2 cut(s)	42, 606
HpaII	CCGG	1 cut(s)	464
Hpy188I	TCNGA	2 cut(s)	406, 694
Hpy188III	TCNNGA	5 cut(s)	120, 327, 526, 763, 793
HpyCH4III	ACNGT	3 cut(s)	485, 621, 811
HpyCH4V	TGCA	9 cut(s)	128, 132, 221, 230, 314, 335, 410, 584, 800
HpyF3I	CTNAG	4 cut(s)	176, 295, 395, 693
Hsp92II	CATG	6 cut(s)	132, 170, 440, 506, 653, 796
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	270, 769
Lsp1109I	GCAGC	5 cut(s)	242, 251, 319, 422, 442
LweI	GCATC	5 cut(s)	142, 217, 370, 397, 768
MaeI	CTAG	2 cut(s)	120, 557
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	272, 771
MboI	GATC	2 cut(s)	270, 769
MboII	GAAGA	4 cut(s)	491, 524, 557, 777
MfeI	CAATTG	1 cut(s)	610
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	1 cut(s)	352
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	7 cut(s)	51, 69, 123, 422, 534, 610, 723
MluNI	TGGCCA	1 cut(s)	750
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	139, 163, 166, 412, 662, 688, 719
Mox20I	TGGCCA	1 cut(s)	750
MroXI	GAANNNNTTC	2 cut(s)	426, 784
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	3 cut(s)	48, 198, 624
MslI	CAYNNNNRTG	2 cut(s)	441, 507
Msp20I	TGGCCA	1 cut(s)	750
MspI	CCGG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	610
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	270, 769
NlaIII	CATG	6 cut(s)	132, 170, 440, 506, 653, 796
NlaIV	GGNNCC	2 cut(s)	253, 448
NspI	RCATGY	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	132
PagI	TCATGA	1 cut(s)	792
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	2 cut(s)	426, 784
PfeI	GAWTC	1 cut(s)	606
PkrI	GCNGC	5 cut(s)	232, 241, 334, 412, 457
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	253, 448
PspPI	GGNCC	2 cut(s)	59, 279
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	1 cut(s)	804
RsaNI	GTAC	1 cut(s)	803
RseI	CAYNNNNRTG	2 cut(s)	441, 507
SaqAI	TTAA	3 cut(s)	48, 198, 624
SatI	GCNGC	5 cut(s)	231, 240, 333, 411, 456
Sau3AI	GATC	2 cut(s)	270, 769
Sau96I	GGNCC	2 cut(s)	59, 279
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	7 cut(s)	29, 117, 250, 334, 420, 435, 630
SfaNI	GCATC	5 cut(s)	142, 217, 370, 397, 768
SmiMI	CAYNNNNRTG	2 cut(s)	441, 507
SphI	GCATGC	1 cut(s)	132
Sse9I	AATT	7 cut(s)	51, 69, 123, 422, 534, 610, 723
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	2 cut(s)	120, 557
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	4 cut(s)	62, 111, 141, 718
TaaI	ACNGT	3 cut(s)	485, 621, 811
TaqI	TCGA	1 cut(s)	326
TasI	AATT	7 cut(s)	51, 69, 123, 422, 534, 610, 723
TatI	WGTACW	1 cut(s)	802
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	3 cut(s)	48, 198, 624
Tru9I	TTAA	3 cut(s)	48, 198, 624
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	5 cut(s)	230, 239, 332, 410, 455
TspDTI	ATGAA	6 cut(s)	425, 491, 525, 558, 777, 781
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	1 cut(s)	601
XapI	RAATTY	3 cut(s)	69, 422, 534
XbaI	TCTAGA	1 cut(s)	119
XceI	RCATGY	1 cut(s)	132
XmnI	GAANNNNTTC	2 cut(s)	426, 784
XspI	CTAG	2 cut(s)	120, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.