Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Forward (+)

46053490 .. 46057496

Gene Structure 4007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG327900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTTTGCATCGAATGGATTAGTTACTGGAAGCTACTTTCAGCCTGGAGTCGTCAAAATTGGTGGCCAAAGGCAAATTCCTGGTTTGAAGCAGGACTTATTGTGCTTGTCAAGTGCCAAGGTGTCTAGAATTGCATGCAGAGTTGTCAAGGAGGATGATGCCTCCTATAAGCATGAGGAACTTAGAAAGAAACGGCCTTTGGTTAAGATGTGTGGCATTACATCTGCAACAGATGCAGCAATGGCAGCAGAAGCTGGTGCCGATTTTATTGGGATGATCATTTGGCCCAACTCTAAACGCTCAGTTTCACTTTCGGTTGCAAAGGAGATTTCGAGAGCTGCAAGGGAGTATGGGGCACAGCCTGTTGGGGTGTTTGTGGATGACGATGCGGACACAATACTAAGAGCCTCTGATGCAGCAGACCTTGAATTTGTTCAGCTTCATGGAGATGGTTCCCGTGCTGCTTTTCCGGCATTAGTCCAAAAGAACCGTATAATATATGTTCTTCATGCTAATGAAGATGGAACACTCTTGAATCAAATTTCTACTGAAGAGTGTTCTCTAGTTGATTGGGTTCTTGTGGATAGTGCAAAGGGTGGCAGTGGCAAAGGATTCAATTGGACACAGTTTAAGCTACCAAGTATTAGAAGCAAGCATGGTTGGCTTTTGGCAGGAGGGATAAAACCAGAGAATGCTTCTGAGGCTCTTTCTACACTCAAACCCCAAGGAATTGATGTTAGTAGTGGCATTTGTGGCCAAGATGGCATCCAGAAAGATCCGTTGCGAATATCTTCATTCATGAGTGCAGTACATACAGTAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

275

Amino Acids

29.54

Weight (kDa)

7.64

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRAI	PF00697	68 - 267	1.9e-36	N-(5'phosphoribosyl)anthranilate (PRA) isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	770
AcoI	YGGCCR	2 cut(s)	64, 754
AcsI	RAATTY	3 cut(s)	75, 428, 540
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	810
AgsI	TTSAA	4 cut(s)	88, 428, 535, 616
AjnI	CCWGG	2 cut(s)	43, 79
AjuI	GAANNNNNNNTTGG	4 cut(s)	60, 92, 182, 214
AluBI	AGCT	5 cut(s)	33, 254, 338, 439, 634
AluI	AGCT	5 cut(s)	33, 254, 338, 439, 634
AlwI	GGATC	1 cut(s)	770
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	4 cut(s)	64, 194, 284, 754
ApeKI	GCWGC	5 cut(s)	236, 245, 338, 416, 461
ApoI	RAATTY	3 cut(s)	75, 428, 540
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
Asp700I	GAANNNNTTC	2 cut(s)	432, 790
AspS9I	GGNCC	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	2 cut(s)	66, 756
BanI	GGYRCC	1 cut(s)	257
BbvI	GCAGC	5 cut(s)	248, 257, 325, 428, 448
BccI	CCATC	3 cut(s)	443, 515, 755
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	2 cut(s)	45, 81
BclI	TGATCA	1 cut(s)	276
BfaI	CTAG	2 cut(s)	126, 563
BglI	GCCNNNNNGGC	1 cut(s)	762
BisI	GCNGC	5 cut(s)	237, 246, 339, 417, 462
BlsI	GCNGC	5 cut(s)	238, 247, 340, 418, 463
Bme1390I	CCNGG	2 cut(s)	45, 81
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	259, 454
BmrFI	CCNGG	2 cut(s)	45, 81
BmsI	GCATC	6 cut(s)	17, 148, 223, 376, 403, 774
BpmI	CTGGAG	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	117, 724
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	45, 81
BseDI	CCNNGG	2 cut(s)	117, 724
BseGI	GGATG	4 cut(s)	160, 279, 385, 765
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	315, 690
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	5 cut(s)	248, 257, 325, 428, 448
BsgI	GTGCAG	1 cut(s)	825
BshFI	GGCC	4 cut(s)	66, 196, 286, 756
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	470
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	4 cut(s)	66, 196, 286, 756
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	276, 775
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	4 cut(s)	66, 196, 286, 756
BspCNI	CTCAG	2 cut(s)	314, 691
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	2 cut(s)	259, 454
BspPI	GGATC	1 cut(s)	770
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	117, 724
BssMI	GATC	2 cut(s)	276, 775
BssT1I	CCWWGG	2 cut(s)	117, 724
Bst2UI	CCWGG	2 cut(s)	45, 81
Bst4CI	ACNGT	3 cut(s)	491, 627, 817
Bst6I	CTCTTC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	136, 653
BstDEI	CTNAG	4 cut(s)	182, 301, 401, 699
BstF5I	GGATG	4 cut(s)	160, 279, 385, 765
BstKTI	GATC	2 cut(s)	279, 778
BstMBI	GATC	2 cut(s)	276, 775
BstNI	CCWGG	2 cut(s)	45, 81
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	43, 79
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	5 cut(s)	248, 257, 325, 428, 448
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	4 cut(s)	66, 196, 286, 756
BtsCI	GGATG	4 cut(s)	160, 279, 385, 765
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	607
Cac8I	GCNNGC	2 cut(s)	136, 653
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	798
Cfr13I	GGNCC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	809
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	6 cut(s)	135, 173, 443, 509, 656, 799
CviQI	GTAC	1 cut(s)	809
DdeI	CTNAG	4 cut(s)	182, 301, 401, 699
DpnI	GATC	2 cut(s)	278, 777
DpnII	GATC	2 cut(s)	276, 775
EaeI	YGGCCR	2 cut(s)	64, 754
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	117, 724
Eco57I	CTGAAG	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	43, 79
EcoT14I	CCWWGG	2 cut(s)	117, 724
ErhI	CCWWGG	2 cut(s)	117, 724
FaeI	CATG	6 cut(s)	138, 176, 446, 512, 659, 802
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	6 cut(s)	134, 172, 442, 508, 655, 798
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	5 cut(s)	237, 246, 339, 417, 462
FokI	GGATG	4 cut(s)	167, 286, 392, 752
Fsp4HI	GCNGC	5 cut(s)	237, 246, 339, 417, 462
FspBI	CTAG	2 cut(s)	126, 563
GluI	GCNGC	5 cut(s)	237, 246, 339, 417, 462
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	4 cut(s)	66, 196, 286, 756
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	6 cut(s)	138, 176, 446, 512, 659, 802
HinfI	GANTC	3 cut(s)	48, 535, 612
HpaII	CCGG	1 cut(s)	470
Hpy188I	TCNGA	2 cut(s)	412, 700
Hpy188III	TCNNGA	5 cut(s)	126, 333, 532, 769, 799
HpyCH4III	ACNGT	3 cut(s)	491, 627, 817
HpyF3I	CTNAG	4 cut(s)	182, 301, 401, 699
Hsp92II	CATG	6 cut(s)	138, 176, 446, 512, 659, 802
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	276, 775
Lsp1109I	GCAGC	5 cut(s)	248, 257, 325, 428, 448
LweI	GCATC	6 cut(s)	17, 148, 223, 376, 403, 774
MaeI	CTAG	2 cut(s)	126, 563
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	278, 777
MboI	GATC	2 cut(s)	276, 775
MboII	GAAGA	4 cut(s)	497, 530, 563, 783
MfeI	CAATTG	1 cut(s)	616
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	2 cut(s)	66, 756
MluCI	AATT	7 cut(s)	57, 75, 129, 428, 540, 616, 729
MluNI	TGGCCA	2 cut(s)	66, 756
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	145, 169, 172, 418, 668, 694
Mox20I	TGGCCA	2 cut(s)	66, 756
MroXI	GAANNNNTTC	2 cut(s)	432, 790
MscI	TGGCCA	2 cut(s)	66, 756
MseI	TTAA	2 cut(s)	204, 630
MslI	CAYNNNNRTG	2 cut(s)	447, 513
Msp20I	TGGCCA	2 cut(s)	66, 756
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	45, 81
MunI	CAATTG	1 cut(s)	616
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	2 cut(s)	45, 81
NdeII	GATC	2 cut(s)	276, 775
NlaIII	CATG	6 cut(s)	138, 176, 446, 512, 659, 802
NlaIV	GGNNCC	2 cut(s)	259, 454
NspI	RCATGY	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	138
PagI	TCATGA	1 cut(s)	798
PctI	GAATGC	1 cut(s)	697
PdmI	GAANNNNTTC	2 cut(s)	432, 790
PfeI	GAWTC	2 cut(s)	535, 612
PkrI	GCNGC	5 cut(s)	238, 247, 340, 418, 463
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	43, 79
PspGI	CCWGG	2 cut(s)	43, 79
PspN4I	GGNNCC	2 cut(s)	259, 454
PspPI	GGNCC	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	1 cut(s)	810
RsaNI	GTAC	1 cut(s)	809
RseI	CAYNNNNRTG	2 cut(s)	447, 513
SaqAI	TTAA	2 cut(s)	204, 630
SatI	GCNGC	5 cut(s)	237, 246, 339, 417, 462
Sau3AI	GATC	2 cut(s)	276, 775
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	2 cut(s)	45, 81
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	7 cut(s)	35, 123, 256, 340, 426, 441, 636
SfaNI	GCATC	6 cut(s)	17, 148, 223, 376, 403, 774
SmiMI	CAYNNNNRTG	2 cut(s)	447, 513
SphI	GCATGC	1 cut(s)	138
Sse9I	AATT	7 cut(s)	57, 75, 129, 428, 540, 616, 729
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	2 cut(s)	126, 563
StyD4I	CCNGG	2 cut(s)	43, 79
StyI	CCWWGG	2 cut(s)	117, 724
TaaI	ACNGT	3 cut(s)	491, 627, 817
TaqI	TCGA	2 cut(s)	11, 332
TasI	AATT	7 cut(s)	57, 75, 129, 428, 540, 616, 729
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	2 cut(s)	535, 612
Tru1I	TTAA	2 cut(s)	204, 630
Tru9I	TTAA	2 cut(s)	204, 630
TscAI	CASTG	1 cut(s)	607
TseI	GCWGC	5 cut(s)	236, 245, 338, 416, 461
TspDTI	ATGAA	5 cut(s)	431, 497, 531, 783, 787
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	1 cut(s)	607
XapI	RAATTY	3 cut(s)	75, 428, 540
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	138
XmnI	GAANNNNTTC	2 cut(s)	432, 790
XspI	CTAG	2 cut(s)	126, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.