Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Forward (+)

60332787 .. 60335126

Gene Structure 2340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G032090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCTCGCAGGATTAGTTACTGGAAGCTACTTTCAGCCTGGAGTCGTCAAAATTGGTGGCCAAAGGCAAATTCCTGGTATCACTAATGCCATCGTTGTTGGAACTTATATGAAATCTTCTGTATATGTTTGCAACATTTGTCGGTGTTGTTATGTATTTGTAGGTTTGAAGCAGGACTTATTGTGCTTGTCAAGTGCCAAGGTGTCTAGAATTGCATGCAGAGTTGTCAAGGAGGATGATGCCTCCTATAAGCATGAGGAACTTAGAAAGAAACGGCCTTTGGTTAAGATGTGTGGCATTACATCTGCAAGAGATGCAGCAATGGCAGCAGAAGCTGGTGCCGATTTTATTGGGATGATCATTTGGCCCAACTCTAAACGCTCAGTTTCACTTCCGGTTGCCAAGGAGATTTCGAGAGCTGCAAGGGAGTATGGGGCACAGCCTGTTGGGGTGTTTGTGGATGACGATGCGGACACAATACTAAGAGCCTCTGACGCAGCAGACCTTGAATTTGTTCAGCTTCATGGAGATGGTTCCCGTGCTGCTTTTCCGGCATTAGTCCAAAAGAACCGTATAATATATGTTCTTCATGCTAATGAAGATGGAACACTCTTGAATCAAATTTCTACTGAAGAGTGTTCTCTAGTTGATTGGGTTCTTGTGGATAGTGCAAAGGGTGGCAGTGGCAAAGGATTCAATTGGACACAGTTTAGGCTACCAAGTATTAGAAGCAAGCATGGTTGGCTTTTGGCAGGAGGGATAAAACCAGAGAATGCTTCTGAGGCTCTTTCTACCCTCAAACCCCAAGGAATTGATGTTAGTAGTGGCATTTGTGGCCCAGATGGCATCCAGAAAGATCCGTTGCGAATATCTTCATTCATGAGTGCAGTACATACAGTAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

302

Amino Acids

32.55

Weight (kDa)

8.51

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRAI	PF00697	95 - 294	3.1e-35	N-(5'phosphoribosyl)anthranilate (PRA) isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	851
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	3 cut(s)	69, 509, 621
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	1 cut(s)	891
AgsI	TTSAA	4 cut(s)	169, 509, 616, 697
AjnI	CCWGG	2 cut(s)	37, 73
AjuI	GAANNNNNNNTTGG	4 cut(s)	54, 86, 263, 295
AluBI	AGCT	4 cut(s)	27, 335, 419, 520
AluI	AGCT	4 cut(s)	27, 335, 419, 520
AlwI	GGATC	1 cut(s)	851
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	4 cut(s)	58, 275, 365, 835
ApeKI	GCWGC	5 cut(s)	317, 326, 419, 497, 542
ApoI	RAATTY	3 cut(s)	69, 509, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp700I	GAANNNNTTC	2 cut(s)	513, 871
AspS9I	GGNCC	2 cut(s)	366, 836
BaeGI	GKGCMC	1 cut(s)	439
BalI	TGGCCA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	338
BbvI	GCAGC	5 cut(s)	329, 338, 406, 509, 529
BccI	CCATC	4 cut(s)	98, 524, 596, 836
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	2 cut(s)	39, 75
BclI	TGATCA	1 cut(s)	357
BfaI	CTAG	2 cut(s)	207, 644
BglI	GCCNNNNNGGC	1 cut(s)	843
BisI	GCNGC	5 cut(s)	318, 327, 420, 498, 543
BlsI	GCNGC	5 cut(s)	319, 328, 421, 499, 544
Bme1390I	CCNGG	2 cut(s)	39, 75
BmgT120I	GGNCC	2 cut(s)	366, 836
BmiI	GGNNCC	2 cut(s)	340, 535
BmrFI	CCNGG	2 cut(s)	39, 75
BmsI	GCATC	4 cut(s)	229, 304, 457, 855
BpmI	CTGGAG	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	198, 402, 805
BsaWI	WCCGGW	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	39, 75
BseDI	CCNNGG	3 cut(s)	198, 402, 805
BseGI	GGATG	4 cut(s)	241, 360, 466, 846
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	396, 771
BseNI	ACTGG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	5 cut(s)	329, 338, 406, 509, 529
BsgI	GTGCAG	1 cut(s)	906
BshFI	GGCC	4 cut(s)	60, 277, 367, 837
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	395, 551
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	4 cut(s)	60, 277, 367, 837
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	357, 856
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	4 cut(s)	60, 277, 367, 837
BspCNI	CTCAG	2 cut(s)	395, 772
BspHI	TCATGA	1 cut(s)	879
BspLI	GGNNCC	2 cut(s)	340, 535
BspPI	GGATC	1 cut(s)	851
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	3 cut(s)	198, 402, 805
BssMI	GATC	2 cut(s)	357, 856
BssT1I	CCWWGG	3 cut(s)	198, 402, 805
Bst2UI	CCWGG	2 cut(s)	39, 75
Bst4CI	ACNGT	3 cut(s)	572, 708, 898
Bst6I	CTCTTC	1 cut(s)	627
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	6, 217, 734
BstDEI	CTNAG	4 cut(s)	263, 382, 482, 780
BstF5I	GGATG	4 cut(s)	241, 360, 466, 846
BstKTI	GATC	2 cut(s)	360, 859
BstMBI	GATC	2 cut(s)	357, 856
BstNI	CCWGG	2 cut(s)	39, 75
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	37, 73
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	5 cut(s)	329, 338, 406, 509, 529
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuRI	GGCC	4 cut(s)	60, 277, 367, 837
BtsCI	GGATG	4 cut(s)	241, 360, 466, 846
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	688
Cac8I	GCNNGC	3 cut(s)	6, 217, 734
CaiI	CAGNNNCTG	1 cut(s)	335
CciI	TCATGA	1 cut(s)	879
Cfr13I	GGNCC	2 cut(s)	366, 836
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	890
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	6 cut(s)	216, 254, 524, 590, 737, 880
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	4 cut(s)	263, 382, 482, 780
DpnI	GATC	2 cut(s)	359, 858
DpnII	GATC	2 cut(s)	357, 856
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	3 cut(s)	198, 402, 805
Eco57I	CTGAAG	1 cut(s)	651
EcoRII	CCWGG	2 cut(s)	37, 73
EcoT14I	CCWWGG	3 cut(s)	198, 402, 805
ErhI	CCWWGG	3 cut(s)	198, 402, 805
FaeI	CATG	6 cut(s)	219, 257, 527, 593, 740, 883
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	6 cut(s)	215, 253, 523, 589, 736, 879
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	5 cut(s)	318, 327, 420, 498, 543
FokI	GGATG	4 cut(s)	248, 367, 473, 833
Fsp4HI	GCNGC	5 cut(s)	318, 327, 420, 498, 543
FspBI	CTAG	2 cut(s)	207, 644
GluI	GCNGC	5 cut(s)	318, 327, 420, 498, 543
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	4 cut(s)	60, 277, 367, 837
HapII	CCGG	2 cut(s)	395, 551
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	6 cut(s)	219, 257, 527, 593, 740, 883
HinfI	GANTC	3 cut(s)	42, 616, 693
HpaII	CCGG	2 cut(s)	395, 551
Hpy188I	TCNGA	2 cut(s)	493, 781
Hpy188III	TCNNGA	5 cut(s)	207, 414, 613, 850, 880
HpyCH4III	ACNGT	3 cut(s)	572, 708, 898
HpyCH4V	TGCA	8 cut(s)	132, 215, 219, 308, 317, 422, 671, 887
HpyF3I	CTNAG	4 cut(s)	263, 382, 482, 780
Hsp92II	CATG	6 cut(s)	219, 257, 527, 593, 740, 883
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	357, 856
Lsp1109I	GCAGC	5 cut(s)	329, 338, 406, 509, 529
LweI	GCATC	4 cut(s)	229, 304, 457, 855
MaeI	CTAG	2 cut(s)	207, 644
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	2 cut(s)	359, 858
MboI	GATC	2 cut(s)	357, 856
MboII	GAAGA	5 cut(s)	108, 578, 611, 644, 864
MfeI	CAATTG	1 cut(s)	697
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	439
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	7 cut(s)	51, 69, 210, 509, 621, 697, 810
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	226, 250, 253, 499, 749, 775, 806
Mox20I	TGGCCA	1 cut(s)	60
MroXI	GAANNNNTTC	2 cut(s)	513, 871
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	528, 594
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	2 cut(s)	395, 551
MspR9I	CCNGG	2 cut(s)	39, 75
MunI	CAATTG	1 cut(s)	697
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	2 cut(s)	39, 75
NdeII	GATC	2 cut(s)	357, 856
NlaIII	CATG	6 cut(s)	219, 257, 527, 593, 740, 883
NlaIV	GGNNCC	2 cut(s)	340, 535
NspI	RCATGY	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	219
PagI	TCATGA	1 cut(s)	879
PctI	GAATGC	1 cut(s)	778
PdmI	GAANNNNTTC	2 cut(s)	513, 871
PfeI	GAWTC	2 cut(s)	616, 693
PkrI	GCNGC	5 cut(s)	319, 328, 421, 499, 544
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	37, 73
PspGI	CCWGG	2 cut(s)	37, 73
PspN4I	GGNNCC	2 cut(s)	340, 535
PspPI	GGNCC	2 cut(s)	366, 836
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
RseI	CAYNNNNRTG	2 cut(s)	528, 594
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	5 cut(s)	318, 327, 420, 498, 543
Sau3AI	GATC	2 cut(s)	357, 856
Sau96I	GGNCC	2 cut(s)	366, 836
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	2 cut(s)	39, 75
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	7 cut(s)	29, 166, 204, 337, 421, 507, 522
SfaNI	GCATC	4 cut(s)	229, 304, 457, 855
SmiMI	CAYNNNNRTG	2 cut(s)	528, 594
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	7 cut(s)	51, 69, 210, 509, 621, 697, 810
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	2 cut(s)	207, 644
StyD4I	CCNGG	2 cut(s)	37, 73
StyI	CCWWGG	3 cut(s)	198, 402, 805
TaaI	ACNGT	3 cut(s)	572, 708, 898
TaqI	TCGA	1 cut(s)	413
TasI	AATT	7 cut(s)	51, 69, 210, 509, 621, 697, 810
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	2 cut(s)	616, 693
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	688
TseI	GCWGC	5 cut(s)	317, 326, 419, 497, 542
TspDTI	ATGAA	6 cut(s)	125, 512, 578, 612, 864, 868
TspGWI	ACGGA	1 cut(s)	849
TspRI	CASTG	1 cut(s)	688
XapI	RAATTY	3 cut(s)	69, 509, 621
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	513, 871
XspI	CTAG	2 cut(s)	207, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.