Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Reverse (-)

7572007 .. 7576345

Gene Structure 4339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTGTCGTCGCCTCGCACCGCCCCTAATCCTTACCCTCCACGTGCGCCGGGCCACCGTTGCCCCACCTTCGTCGTCCGTCCATCGGAGGGCCGCCCCACCCATTGCAAACCCCACCGCCCCCAACCGAGAAGGGAAGTCACTTGCTATTTGCAACGTTATTCTTCTTGATTTGCTTTCTATATATAATCGTGTCTTCAATGTTTCTGAATACTTCCAATTAGCCATAAATGTTGATTTCTTGCCATATAACACCGCTCATATACTTGGATTAGTTACTGGAAGCTACTTTCAGCCTGGAGTCGTCAAAATTGGTGGCCAAAGGCAAATTCCTGGTTTGAAGCAGGACTTATTGTGCTTGTCAAGTGCCAAGGTGTCTAGAATTGCATGCAGAGCTGTCAAGGAGGATGATGCCTCCTATAAGCATGAGGAACTTAGACAGAAACGGCCTTTGGTTAAGATGTGTGGCATTACATCTGCAAGAGATGCAGCAATGGCAGCAGAAGCTGGTGCCGATTTTATTGGGATGATCATTTGGCCCAACTCTAAACGCTCAGTTTCACTTTCAGTTGCAAAGGAGATTTCGAGAGCTGCAAGGGAGTATGGAGCACAGCCTGTTGGGGTGTTTGTGGATGACGATGAGGACACAATACTAAGAGCCTCTGATGCAGCAGACCTTGAATTTGTTCAGCTTCATGGAGATGGTTCCCGTGCTGCTTTTCCGGCATTAGTCCAAAAGAACCGTATAATATATGTTCTTCATGCTAATGAAGATGGAACACTCTTGAATCAAATTTCTACTGAAGAGTGTTCTCTAGTTGATTGGGTTCTTGTGGACAGTGCAAAGGGTGGCAGTGGCAAAGGATTCAATTGGACACAGTTTAAGCTACCAAGTATTAGAAGCAAGCATGGTTGGCTTTTGGCAGGAGGGATAAAACCAGAGAATGCTTCTGAGGCTCTTTCTACCCTCAAACCCCAAGGAATTGATGTTAGTAGTGGCATTTGTGGCCAAGATGGCATCCAGAAAGATCCGTTGCGAATCTCTTCATTCATGTGTGCAGTACATACAGTAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

359

Amino Acids

38.97

Weight (kDa)

8.72

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRAI	PF00697	152 - 351	8.2e-36	N-(5'phosphoribosyl)anthranilate (PRA) isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AccBSI	CCGCTC	1 cut(s)	257
AciI	CCGC	4 cut(s)	20, 93, 117, 255
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	1 cut(s)	1022
AcoI	YGGCCR	2 cut(s)	316, 1006
AcsI	RAATTY	3 cut(s)	327, 680, 792
AcuI	CTGAAG	1 cut(s)	822
AcvI	CACGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	1062
AfiI	CCNNNNNNNGG	2 cut(s)	84, 88
AgsI	TTSAA	5 cut(s)	199, 340, 680, 787, 868
AjnI	CCWGG	2 cut(s)	295, 331
AjuI	GAANNNNNNNTTGG	4 cut(s)	312, 344, 434, 466
AluBI	AGCT	6 cut(s)	285, 395, 506, 590, 691, 886
AluI	AGCT	6 cut(s)	285, 395, 506, 590, 691, 886
Alw21I	GWGCWC	1 cut(s)	610
AlwI	GGATC	1 cut(s)	1022
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	6 cut(s)	51, 90, 316, 446, 536, 1006
ApeKI	GCWGC	5 cut(s)	488, 497, 590, 668, 713
ApoI	RAATTY	3 cut(s)	327, 680, 792
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
Asp700I	GAANNNNTTC	2 cut(s)	684, 1042
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	3 cut(s)	51, 90, 537
AsuC2I	CCSGG	1 cut(s)	50
BalI	TGGCCA	2 cut(s)	318, 1008
BanI	GGYRCC	1 cut(s)	509
BbrPI	CACGTG	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	5 cut(s)	500, 509, 577, 680, 700
BccI	CCATC	4 cut(s)	90, 695, 767, 1007
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	2 cut(s)	297, 333
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	2 cut(s)	378, 815
BglI	GCCNNNNNGGC	1 cut(s)	1014
BisI	GCNGC	6 cut(s)	93, 489, 498, 591, 669, 714
BlsI	GCNGC	6 cut(s)	94, 490, 499, 592, 670, 715
Bme1390I	CCNGG	3 cut(s)	50, 297, 333
BmgT120I	GGNCC	3 cut(s)	51, 90, 537
BmiI	GGNNCC	2 cut(s)	511, 706
BmrFI	CCNGG	3 cut(s)	50, 297, 333
BmsI	GCATC	4 cut(s)	400, 475, 655, 1026
BpiI	GAAGAC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	369, 976
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 88
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	2 cut(s)	102, 498
BseBI	CCWGG	2 cut(s)	297, 333
BseDI	CCNNGG	2 cut(s)	369, 976
BseGI	GGATG	4 cut(s)	412, 531, 637, 1017
BseLI	CCNNNNNNNGG	2 cut(s)	84, 88
BseMI	GCAATG	2 cut(s)	102, 498
BseMII	CTCAG	2 cut(s)	567, 942
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	5 cut(s)	500, 509, 577, 680, 700
BsgI	GTGCAG	1 cut(s)	1077
BshFI	GGCC	6 cut(s)	53, 92, 318, 448, 538, 1008
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	49, 722
BslI	CCNNNNNNNGG	2 cut(s)	84, 88
BsmI	GAATGC	1 cut(s)	949
BsnI	GGCC	6 cut(s)	53, 92, 318, 448, 538, 1008
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	2 cut(s)	528, 1027
BspACI	CCGC	4 cut(s)	20, 93, 117, 255
BspANI	GGCC	6 cut(s)	53, 92, 318, 448, 538, 1008
BspCNI	CTCAG	2 cut(s)	566, 943
BspLI	GGNNCC	2 cut(s)	511, 706
BspPI	GGATC	1 cut(s)	1022
BspT107I	GGYRCC	1 cut(s)	509
BsrBI	CCGCTC	1 cut(s)	257
BsrDI	GCAATG	2 cut(s)	102, 498
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	369, 976
BssMI	GATC	2 cut(s)	528, 1027
BssT1I	CCWWGG	2 cut(s)	369, 976
Bst2UI	CCWGG	2 cut(s)	297, 333
Bst4CI	ACNGT	5 cut(s)	58, 743, 839, 879, 1069
Bst6I	CTCTTC	2 cut(s)	798, 1048
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	388, 905
BstDEI	CTNAG	4 cut(s)	434, 553, 653, 951
BstF5I	GGATG	4 cut(s)	412, 531, 637, 1017
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	531, 1030
BstMBI	GATC	2 cut(s)	528, 1027
BstNI	CCWGG	2 cut(s)	297, 333
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	3 cut(s)	48, 295, 331
BstV1I	GCAGC	5 cut(s)	500, 509, 577, 680, 700
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
BsuRI	GGCC	6 cut(s)	53, 92, 318, 448, 538, 1008
BtsCI	GGATG	4 cut(s)	412, 531, 637, 1017
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	2 cut(s)	844, 859
Cac8I	GCNNGC	2 cut(s)	388, 905
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	51, 90, 537
Csp6I	GTAC	1 cut(s)	1061
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	6 cut(s)	387, 425, 695, 761, 908, 1051
CviQI	GTAC	1 cut(s)	1061
DdeI	CTNAG	4 cut(s)	434, 553, 653, 951
DpnI	GATC	2 cut(s)	530, 1029
DpnII	GATC	2 cut(s)	528, 1027
EaeI	YGGCCR	2 cut(s)	316, 1006
Eam1104I	CTCTTC	2 cut(s)	798, 1048
EarI	CTCTTC	2 cut(s)	798, 1048
Eco130I	CCWWGG	2 cut(s)	369, 976
Eco57I	CTGAAG	1 cut(s)	822
Eco72I	CACGTG	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	295, 331
EcoT14I	CCWWGG	2 cut(s)	369, 976
ErhI	CCWWGG	2 cut(s)	369, 976
FaeI	CATG	6 cut(s)	390, 428, 698, 764, 911, 1054
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	6 cut(s)	386, 424, 694, 760, 907, 1050
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	6 cut(s)	93, 489, 498, 591, 669, 714
FokI	GGATG	4 cut(s)	419, 538, 644, 1004
Fsp4HI	GCNGC	6 cut(s)	93, 489, 498, 591, 669, 714
FspBI	CTAG	2 cut(s)	378, 815
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	6 cut(s)	93, 489, 498, 591, 669, 714
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	6 cut(s)	53, 92, 318, 448, 538, 1008
HapII	CCGG	2 cut(s)	49, 722
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	6 cut(s)	390, 428, 698, 764, 911, 1054
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	300, 787, 864, 1038
HpaII	CCGG	2 cut(s)	49, 722
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	4 cut(s)	87, 208, 664, 952
Hpy188III	TCNNGA	5 cut(s)	167, 378, 585, 784, 1021
Hpy8I	GTNNAC	1 cut(s)	835
Hpy99I	CGWCG	2 cut(s)	12, 76
HpyAV	CCTTC	2 cut(s)	78, 125
HpyCH4III	ACNGT	5 cut(s)	58, 743, 839, 879, 1069
HpyCH4IV	ACGT	2 cut(s)	42, 156
HpyF3I	CTNAG	4 cut(s)	434, 553, 653, 951
HpySE526I	ACGT	2 cut(s)	42, 156
Hsp92II	CATG	6 cut(s)	390, 428, 698, 764, 911, 1054
HspAI	GCGC	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	2 cut(s)	528, 1027
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	5 cut(s)	500, 509, 577, 680, 700
LweI	GCATC	4 cut(s)	400, 475, 655, 1026
MaeI	CTAG	2 cut(s)	378, 815
MaeII	ACGT	2 cut(s)	42, 156
MaeIII	GTNAC	2 cut(s)	138, 274
MalI	GATC	2 cut(s)	530, 1029
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	2 cut(s)	528, 1027
MboII	GAAGA	6 cut(s)	155, 187, 749, 782, 815, 1035
MfeI	CAATTG	1 cut(s)	868
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	1 cut(s)	610
MlsI	TGGCCA	2 cut(s)	318, 1008
MluCI	AATT	8 cut(s)	218, 309, 327, 381, 680, 792, 868, 981
MluNI	TGGCCA	2 cut(s)	318, 1008
MlyI	GAGTC	1 cut(s)	309
Mox20I	TGGCCA	2 cut(s)	318, 1008
MroXI	GAANNNNTTC	2 cut(s)	684, 1042
MscI	TGGCCA	2 cut(s)	318, 1008
MseI	TTAA	2 cut(s)	456, 882
MslI	CAYNNNNRTG	3 cut(s)	699, 765, 1051
Msp20I	TGGCCA	2 cut(s)	318, 1008
MspI	CCGG	2 cut(s)	49, 722
MspR9I	CCNGG	3 cut(s)	50, 297, 333
MunI	CAATTG	1 cut(s)	868
Mva1269I	GAATGC	1 cut(s)	949
MvaI	CCWGG	2 cut(s)	297, 333
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	2 cut(s)	528, 1027
NlaIII	CATG	6 cut(s)	390, 428, 698, 764, 911, 1054
NlaIV	GGNNCC	2 cut(s)	511, 706
NmuCI	GTSAC	1 cut(s)	138
NspI	RCATGY	1 cut(s)	390
PaeI	GCATGC	1 cut(s)	390
PctI	GAATGC	1 cut(s)	949
PdmI	GAANNNNTTC	2 cut(s)	684, 1042
PfeI	GAWTC	3 cut(s)	787, 864, 1038
PkrI	GCNGC	6 cut(s)	94, 490, 499, 592, 670, 715
PleI	GAGTC	1 cut(s)	308
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	308
Ppu21I	YACGTR	1 cut(s)	43
Psp1406I	AACGTT	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	295, 331
PspCI	CACGTG	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	295, 331
PspN4I	GGNNCC	2 cut(s)	511, 706
PspPI	GGNCC	3 cut(s)	51, 90, 537
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	1027
RsaI	GTAC	1 cut(s)	1062
RsaNI	GTAC	1 cut(s)	1061
RseI	CAYNNNNRTG	3 cut(s)	699, 765, 1051
SaqAI	TTAA	2 cut(s)	456, 882
SatI	GCNGC	6 cut(s)	93, 489, 498, 591, 669, 714
Sau3AI	GATC	2 cut(s)	528, 1027
Sau96I	GGNCC	3 cut(s)	51, 90, 537
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	3 cut(s)	50, 297, 333
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	4 cut(s)	400, 475, 655, 1026
SmiMI	CAYNNNNRTG	3 cut(s)	699, 765, 1051
SphI	GCATGC	1 cut(s)	390
Sse9I	AATT	8 cut(s)	218, 309, 327, 381, 680, 792, 868, 981
SsiI	CCGC	4 cut(s)	20, 93, 117, 255
SspMI	CTAG	2 cut(s)	378, 815
StyD4I	CCNGG	3 cut(s)	48, 295, 331
StyI	CCWWGG	2 cut(s)	369, 976
TaaI	ACNGT	5 cut(s)	58, 743, 839, 879, 1069
TaiI	ACGT	2 cut(s)	45, 159
TaqI	TCGA	1 cut(s)	584
TasI	AATT	8 cut(s)	218, 309, 327, 381, 680, 792, 868, 981
TatI	WGTACW	1 cut(s)	1060
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	787, 864, 1038
Tru1I	TTAA	2 cut(s)	456, 882
Tru9I	TTAA	2 cut(s)	456, 882
TscAI	CASTG	2 cut(s)	844, 859
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	5 cut(s)	488, 497, 590, 668, 713
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	5 cut(s)	683, 749, 783, 1035, 1039
TspGWI	ACGGA	2 cut(s)	67, 1020
TspRI	CASTG	2 cut(s)	844, 859
XapI	RAATTY	3 cut(s)	327, 680, 792
XbaI	TCTAGA	1 cut(s)	377
XceI	RCATGY	1 cut(s)	390
XmnI	GAANNNNTTC	2 cut(s)	684, 1042
XspI	CTAG	2 cut(s)	378, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.