Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Forward (+)

26571414 .. 26573475

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCTTACAGGATTAACTACTGGAAGCCACTTTCAGCCTGACGTAGTCAGAATCTGTCACACAAGGCAAATTCCTGGTTTAAAACAGGACCCATTGTGCTTTTCAAGTGCCAAATTGCATAGAAAGAAAACGATTACTTGCAGAGCTATCAAGGCAGAAGATGTCTCCTATAAGCCCGAGGAACGTAAAAAGAATGGACCTTTGGTTAAGATGTGTGGCATTACATCTGCTAGAGATGCAGCTATGGCAGCAGAAGCTGGTGCTGATTTTATTGGGATGATCATTTGGCCCAACTCTAAACGCTCTGTTTCACTATCTGTTGCCAAGGAGATTTCAAGAGTTGCAAGAGATTATGGGGCACAGCCTGTTGGGGTGTTTGTGGATGATGATGCAGACACAATATTAAGAGCCGCTGATGCATCAGACCTTGAACTTGTTCAGCTTCATGGAGATGGTTCCCGAGCAGCTTTTCCAGTATTAGCCCAAGATCACCGTATAATATACGTTCTTCATGCTAATGAAGATGGAACTCTTCTTAACCAGATTTCTGCTGAGCAGTGTTCTCTGGTTGATTGGGTTCTTGTAGATAGTGCAAAGGGTGGTAGCGGTAAGGGATTCGATTGGAGCCAGTTTAAGCTACCAAATATTAGAAGCAAACATGGGTGGCTCTTGGCAGGAGGGATAAAGCCTGAGAATGCTTGTGAGGCTCTTTCTACCCTCAAACCTCAAGGAATTGATGTTAGCAGTGGCATTTGCGGCCCGGATGGCATCCAGAAGGACGAATTGCAAATATCTTCCTTCATGAGTGCAGTACATTCAGTAAACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

277

Amino Acids

29.8

Weight (kDa)

6.7

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	411, 606, 756
AcsI	RAATTY	1 cut(s)	69
AfaI	GTAC	1 cut(s)	813
AgsI	TTSAA	3 cut(s)	105, 336, 431
AjnI	CCWGG	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	6 cut(s)	146, 242, 257, 442, 467, 637
AluI	AGCT	6 cut(s)	146, 242, 257, 442, 467, 637
Alw26I	GTCTC	1 cut(s)	169
AlwNI	CAGNNNCTG	2 cut(s)	54, 257
Ama87I	CYCGRG	2 cut(s)	176, 459
AoxI	GGCC	2 cut(s)	287, 757
ApeKI	GCWGC	3 cut(s)	239, 248, 464
ApoI	RAATTY	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	4 cut(s)	88, 197, 288, 758
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	1 cut(s)	482
AvaI	CYCGRG	2 cut(s)	176, 459
AvaII	GGWCC	2 cut(s)	88, 197
BaeGI	GKGCMC	1 cut(s)	361
BbvI	GCAGC	3 cut(s)	251, 260, 476
BccI	CCATC	3 cut(s)	446, 518, 758
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	231
BglI	GCCNNNNNGGC	1 cut(s)	765
BisI	GCNGC	5 cut(s)	240, 249, 411, 465, 757
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	5 cut(s)	241, 250, 412, 466, 758
Bme1390I	CCNGG	2 cut(s)	75, 761
Bme18I	GGWCC	2 cut(s)	88, 197
BmeT110I	CYCGRG	2 cut(s)	176, 459
BmgT120I	GGNCC	4 cut(s)	88, 197, 288, 758
BmiI	GGNNCC	3 cut(s)	90, 457, 626
BmrFI	CCNGG	2 cut(s)	75, 761
BmsI	GCATC	5 cut(s)	226, 379, 406, 428, 777
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	761
BsaJI	CCNNGG	2 cut(s)	177, 324
Bse1I	ACTGG	3 cut(s)	25, 473, 628
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	177, 324
BseGI	GGATG	4 cut(s)	282, 388, 768, 769
BseMII	CTCAG	2 cut(s)	543, 681
BseNI	ACTGG	3 cut(s)	25, 473, 628
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	3 cut(s)	251, 260, 476
BsgI	GTGCAG	1 cut(s)	828
BshFI	GGCC	2 cut(s)	289, 759
BsiHKCI	CYCGRG	2 cut(s)	176, 459
BsiSI	CCGG	1 cut(s)	761
BsmAI	GTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	289, 759
BsoBI	CYCGRG	2 cut(s)	176, 459
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	279, 487
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	3 cut(s)	411, 606, 756
BspANI	GGCC	2 cut(s)	289, 759
BspCNI	CTCAG	2 cut(s)	544, 682
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	3 cut(s)	90, 457, 626
BsrI	ACTGG	3 cut(s)	25, 473, 628
BssECI	CCNNGG	2 cut(s)	177, 324
BssMI	GATC	2 cut(s)	279, 487
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	552, 690
BstF5I	GGATG	4 cut(s)	282, 388, 768, 769
BstKTI	GATC	2 cut(s)	282, 490
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	279, 487
BstMWI	GCNNNNNNNGC	9 cut(s)	152, 236, 245, 248, 254, 416, 704, 756, 765
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	73, 759
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	3 cut(s)	251, 260, 476
BsuRI	GGCC	2 cut(s)	289, 759
BtsCI	GGATG	4 cut(s)	282, 388, 768, 769
BtsI	GCAGTG	2 cut(s)	563, 751
BtsIMutI	CAGTG	2 cut(s)	563, 751
CaiI	CAGNNNCTG	2 cut(s)	54, 257
CciI	TCATGA	1 cut(s)	801
Cfr13I	GGNCC	4 cut(s)	88, 197, 288, 758
Csp6I	GTAC	1 cut(s)	812
CviAII	CATG	4 cut(s)	446, 512, 659, 802
CviQI	GTAC	1 cut(s)	812
DdeI	CTNAG	2 cut(s)	552, 690
DpnI	GATC	2 cut(s)	281, 489
DpnII	GATC	2 cut(s)	279, 487
DraI	TTTAAA	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	88, 197
Eco88I	CYCGRG	2 cut(s)	176, 459
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	324
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	4 cut(s)	449, 515, 662, 805
FatI	CATG	4 cut(s)	445, 511, 658, 801
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	5 cut(s)	240, 249, 411, 465, 757
FokI	GGATG	4 cut(s)	289, 395, 755, 776
Fsp4HI	GCNGC	5 cut(s)	240, 249, 411, 465, 757
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	5 cut(s)	240, 249, 411, 465, 757
HaeIII	GGCC	2 cut(s)	289, 759
HapII	CCGG	1 cut(s)	761
Hin1II	CATG	4 cut(s)	449, 515, 662, 805
HinfI	GANTC	2 cut(s)	51, 615
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	2 cut(s)	50, 424
Hpy188III	TCNNGA	4 cut(s)	336, 459, 772, 802
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	2 cut(s)	769, 808
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4IV	ACGT	3 cut(s)	42, 184, 504
HpyCH4V	TGCA	9 cut(s)	118, 141, 239, 344, 392, 419, 593, 787, 809
HpyF10VI	GCNNNNNNNGC	9 cut(s)	152, 236, 245, 248, 254, 416, 704, 756, 765
HpyF3I	CTNAG	2 cut(s)	552, 690
HpySE526I	ACGT	3 cut(s)	42, 184, 504
Hsp92II	CATG	4 cut(s)	449, 515, 662, 805
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	279, 487
LmnI	GCTCC	1 cut(s)	624
Lsp1109I	GCAGC	3 cut(s)	251, 260, 476
LweI	GCATC	5 cut(s)	226, 379, 406, 428, 777
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	3 cut(s)	42, 184, 504
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	281, 489
MboI	GATC	2 cut(s)	279, 487
MboII	GAAGA	5 cut(s)	170, 500, 524, 533, 786
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	4 cut(s)	69, 113, 732, 782
MnlI	CCTC	5 cut(s)	172, 671, 697, 728, 735
Mph1103I	ATGCAT	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	6 cut(s)	14, 80, 207, 404, 537, 633
MslI	CAYNNNNRTG	2 cut(s)	450, 516
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	2 cut(s)	75, 761
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	9 cut(s)	152, 236, 245, 248, 254, 416, 704, 756, 765
NciI	CCSGG	1 cut(s)	761
NdeII	GATC	2 cut(s)	279, 487
NlaIII	CATG	4 cut(s)	449, 515, 662, 805
NlaIV	GGNNCC	3 cut(s)	90, 457, 626
NmuCI	GTSAC	1 cut(s)	56
NsiI	ATGCAT	1 cut(s)	421
PagI	TCATGA	1 cut(s)	801
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	51, 615
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	241, 250, 412, 466, 758
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	90, 457, 626
PspPI	GGNCC	4 cut(s)	88, 197, 288, 758
PspPPI	RGGWCCY	1 cut(s)	88
PstNI	CAGNNNCTG	2 cut(s)	54, 257
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	813
RsaNI	GTAC	1 cut(s)	812
RseI	CAYNNNNRTG	2 cut(s)	450, 516
SaqAI	TTAA	6 cut(s)	14, 80, 207, 404, 537, 633
SatI	GCNGC	5 cut(s)	240, 249, 411, 465, 757
Sau3AI	GATC	2 cut(s)	279, 487
Sau96I	GGNCC	4 cut(s)	88, 197, 288, 758
ScrFI	CCNGG	2 cut(s)	75, 761
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	5 cut(s)	226, 379, 406, 428, 777
SinI	GGWCC	2 cut(s)	88, 197
SmiMI	CAYNNNNRTG	2 cut(s)	450, 516
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
Sse9I	AATT	4 cut(s)	69, 113, 732, 782
SsiI	CCGC	3 cut(s)	411, 606, 756
SspI	AATATT	2 cut(s)	402, 646
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	73, 759
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	494
TaiI	ACGT	3 cut(s)	45, 187, 507
TaqI	TCGA	1 cut(s)	618
TasI	AATT	4 cut(s)	69, 113, 732, 782
TatI	WGTACW	1 cut(s)	811
TauI	GCSGC	2 cut(s)	413, 759
TfiI	GAWTC	2 cut(s)	51, 615
Tru1I	TTAA	6 cut(s)	14, 80, 207, 404, 537, 633
Tru9I	TTAA	6 cut(s)	14, 80, 207, 404, 537, 633
TscAI	CASTG	2 cut(s)	563, 751
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	239, 248, 464
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	434, 500, 534, 790
TspRI	CASTG	2 cut(s)	563, 751
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	88, 197
XapI	RAATTY	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.