Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005656.1

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Forward (+)

26401 .. 29269

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005656.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgctgtcggaggtgatcgggctggagactggggcggtgggatttcgatctgtttggctttcgtctgatggtggtgaccgagtgtgtggcggcggtcgggaattcggatcctgcaatagggctgttgaccctttagggtgggcttggggatggagacgctgggagtacaggtttattcatcatggaattgggcactcgagctttgggtttgtgcctttgtggtggtgcggtccggaaccaatcattagtttcccctgcggtaatcttcgcacaaaattgattgactgggaaaccatgctcgcaggattagttactggaagctactttcagcctggagtcgtcaaaattggtggccaaaggcaaattcctggtttgaagcaggacttattgtgcttgtcaagtgccaaggtgtctagaattgcatgcagagttgtcaaggaggatgatgcctcctataagcatgaggaacttagaaagaaacggcctttggttaagatgtgtggcattacatctgcaagagatgcagcaatggcagcagaagctggtgctgattttattgggatgatcatttggcccaactctaaacgctcagtttcacttccggttgccaaggagatttcgagagctgcaagggagtatggggcacagcctgttggggtgtttgtggatgacgatgcggacacaatactaagagcctctgatgcagcagaccttgaatttgttcagcttcatggagatggttcccgtgctgcttttccggcattagtccaaaagaaccgtataatatatgttcttcatgctaatgaagatggaacactcttgaatcaaatttctactgaagagtgttctctagttgattgggttcttgtggatagtgcaaagggtggcagtggcaaaggattcaattggacacagtttaagctaccaagtattagaagcaagcatggttggcttttggcaggaggaataaaaccagagaatgcttctgaggctctttctaccctcaaaccccaaggaattgatgttagtagtggcatttgtggcccagatggcatccagaaagatccgttgcgaatatcttcattcatgagtgcagtacatacagtaatctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

371

Amino Acids

40.35

Weight (kDa)

7.58

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	6 cut(s)	35, 90, 93, 228, 258, 677
AclWI	GGATC	3 cut(s)	102, 115, 1058
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	4 cut(s)	101, 363, 716, 828
AcuI	CTGAAG	1 cut(s)	858
AfaI	GTAC	2 cut(s)	167, 1098
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	376, 716, 823, 904
AjnI	CCWGG	2 cut(s)	331, 367
AjuI	GAANNNNNNNTTGG	4 cut(s)	348, 380, 470, 502
AluBI	AGCT	6 cut(s)	201, 321, 542, 626, 727, 922
AluI	AGCT	6 cut(s)	201, 321, 542, 626, 727, 922
Alw26I	GTCTC	2 cut(s)	20, 148
AlwI	GGATC	3 cut(s)	102, 115, 1058
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	4 cut(s)	352, 482, 572, 1042
ApeKI	GCWGC	5 cut(s)	524, 533, 626, 704, 749
ApoI	RAATTY	4 cut(s)	101, 363, 716, 828
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
Asp700I	GAANNNNTTC	2 cut(s)	720, 1078
AspS9I	GGNCC	3 cut(s)	230, 573, 1043
AsuHPI	GGTGA	2 cut(s)	25, 86
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	2 cut(s)	195, 646
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	107
BbvI	GCAGC	5 cut(s)	536, 545, 613, 716, 736
BccI	CCATC	5 cut(s)	62, 144, 731, 803, 1043
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	2 cut(s)	333, 369
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	20, 148
BfaI	CTAG	2 cut(s)	414, 851
BglI	GCCNNNNNGGC	1 cut(s)	1050
BisI	GCNGC	6 cut(s)	91, 525, 534, 627, 705, 750
BlsI	GCNGC	6 cut(s)	92, 526, 535, 628, 706, 751
Bme1390I	CCNGG	2 cut(s)	333, 369
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	3 cut(s)	230, 573, 1043
BmiI	GGNNCC	3 cut(s)	109, 237, 742
BmrFI	CCNGG	2 cut(s)	333, 369
BmrI	ACTGGG	2 cut(s)	39, 295
BmsI	GCATC	5 cut(s)	436, 511, 664, 691, 1062
BmuI	ACTGGG	2 cut(s)	39, 295
BpmI	CTGGAG	2 cut(s)	44, 354
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	405, 609, 1012
BsaWI	WCCGGW	2 cut(s)	232, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	3 cut(s)	34, 290, 319
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	46
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	333, 369
BseDI	CCNNGG	3 cut(s)	405, 609, 1012
BseGI	GGATG	5 cut(s)	155, 448, 567, 673, 1053
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	2 cut(s)	603, 978
BseNI	ACTGG	3 cut(s)	34, 290, 319
BseSI	GKGCMC	2 cut(s)	195, 646
BseXI	GCAGC	5 cut(s)	536, 545, 613, 716, 736
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	1113
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	4 cut(s)	354, 484, 574, 1044
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	233, 602, 758
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	20, 148
BsmBI	CGTCTC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	985
BsnI	GGCC	4 cut(s)	354, 484, 574, 1044
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	195, 646
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	15, 47, 107, 564, 1063
BspACI	CCGC	6 cut(s)	35, 90, 93, 228, 258, 677
BspANI	GGCC	4 cut(s)	354, 484, 574, 1044
BspCNI	CTCAG	2 cut(s)	602, 979
BspEI	TCCGGA	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	1086
BspLI	GGNNCC	3 cut(s)	109, 237, 742
BspPI	GGATC	3 cut(s)	102, 115, 1058
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	34, 290, 319
BssECI	CCNNGG	3 cut(s)	405, 609, 1012
BssMI	GATC	5 cut(s)	15, 47, 107, 564, 1063
BssT1I	CCWWGG	3 cut(s)	405, 609, 1012
Bst2UI	CCWGG	2 cut(s)	333, 369
Bst4CI	ACNGT	3 cut(s)	779, 915, 1105
Bst6I	CTCTTC	1 cut(s)	834
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	3 cut(s)	300, 424, 941
BstDEI	CTNAG	4 cut(s)	470, 589, 689, 987
BstEII	GGTNACC	1 cut(s)	74
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	5 cut(s)	155, 448, 567, 673, 1053
BstKTI	GATC	5 cut(s)	18, 50, 110, 567, 1066
BstMAI	GTCTC	2 cut(s)	20, 148
BstMBI	GATC	5 cut(s)	15, 47, 107, 564, 1063
BstMCI	CGRYCG	1 cut(s)	97
BstNI	CCWGG	2 cut(s)	333, 369
BstNSI	RCATGY	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	331, 367
BstSLI	GKGCMC	2 cut(s)	195, 646
BstV1I	GCAGC	5 cut(s)	536, 545, 613, 716, 736
BstX2I	RGATCY	2 cut(s)	107, 1063
BstYI	RGATCY	2 cut(s)	107, 1063
BsuRI	GGCC	4 cut(s)	354, 484, 574, 1044
BtsCI	GGATG	5 cut(s)	155, 448, 567, 673, 1053
BtsI	GCAGTG	1 cut(s)	895
BtsIMutI	CAGTG	1 cut(s)	895
Cac8I	GCNNGC	3 cut(s)	300, 424, 941
CaiI	CAGNNNCTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	1086
Cfr13I	GGNCC	3 cut(s)	230, 573, 1043
CpoI	CGGWCCG	1 cut(s)	230
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	166, 1097
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CspI	CGGWCCG	1 cut(s)	230
CviAII	CATG	8 cut(s)	182, 295, 423, 461, 731, 797, 944, 1087
CviQI	GTAC	2 cut(s)	166, 1097
DdeI	CTNAG	4 cut(s)	470, 589, 689, 987
DpnI	GATC	5 cut(s)	17, 49, 109, 566, 1065
DpnII	GATC	5 cut(s)	15, 47, 107, 564, 1063
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	834
Eco130I	CCWWGG	3 cut(s)	405, 609, 1012
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	858
Eco88I	CYCGRG	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	74
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	331, 367
EcoT14I	CCWWGG	3 cut(s)	405, 609, 1012
ErhI	CCWWGG	3 cut(s)	405, 609, 1012
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	8 cut(s)	185, 298, 426, 464, 734, 800, 947, 1090
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	8 cut(s)	181, 294, 422, 460, 730, 796, 943, 1086
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	6 cut(s)	91, 525, 534, 627, 705, 750
FokI	GGATG	5 cut(s)	162, 455, 574, 680, 1040
Fsp4HI	GCNGC	6 cut(s)	91, 525, 534, 627, 705, 750
FspBI	CTAG	2 cut(s)	414, 851
GluI	GCNGC	6 cut(s)	91, 525, 534, 627, 705, 750
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	2 cut(s)	44, 354
HaeIII	GGCC	4 cut(s)	354, 484, 574, 1044
HapII	CCGG	3 cut(s)	233, 602, 758
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	8 cut(s)	185, 298, 426, 464, 734, 800, 947, 1090
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	336, 823, 900
HpaII	CCGG	3 cut(s)	233, 602, 758
HphI	GGTGA	2 cut(s)	25, 86
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	10, 67, 107, 700, 988
Hpy188III	TCNNGA	7 cut(s)	98, 233, 414, 621, 820, 1057, 1087
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	3 cut(s)	779, 915, 1105
HpyCH4V	TGCA	9 cut(s)	114, 422, 426, 515, 524, 629, 704, 878, 1094
HpyF3I	CTNAG	4 cut(s)	470, 589, 689, 987
Hsp92II	CATG	8 cut(s)	185, 298, 426, 464, 734, 800, 947, 1090
Kpn2I	TCCGGA	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	5 cut(s)	15, 47, 107, 564, 1063
Lsp1109I	GCAGC	5 cut(s)	536, 545, 613, 716, 736
LweI	GCATC	5 cut(s)	436, 511, 664, 691, 1062
MaeI	CTAG	2 cut(s)	414, 851
MaeIII	GTNAC	2 cut(s)	74, 310
MalI	GATC	5 cut(s)	17, 49, 109, 566, 1065
MboI	GATC	5 cut(s)	15, 47, 107, 564, 1063
MboII	GAAGA	5 cut(s)	257, 785, 818, 851, 1071
MfeI	CAATTG	1 cut(s)	904
MflI	RGATCY	2 cut(s)	107, 1063
MhlI	GDGCHC	2 cut(s)	195, 646
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	345
MnlI	CCTC	8 cut(s)	4, 433, 457, 460, 706, 956, 982, 1013
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	232
MroXI	GAANNNNTTC	2 cut(s)	720, 1078
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	2 cut(s)	492, 918
MslI	CAYNNNNRTG	2 cut(s)	735, 801
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	3 cut(s)	233, 602, 758
MspR9I	CCNGG	2 cut(s)	333, 369
MunI	CAATTG	1 cut(s)	904
Mva1269I	GAATGC	1 cut(s)	985
MvaI	CCWGG	2 cut(s)	333, 369
NdeII	GATC	5 cut(s)	15, 47, 107, 564, 1063
NlaIII	CATG	8 cut(s)	185, 298, 426, 464, 734, 800, 947, 1090
NlaIV	GGNNCC	3 cut(s)	109, 237, 742
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	426
PaeI	GCATGC	1 cut(s)	426
PaeR7I	CTCGAG	1 cut(s)	196
PagI	TCATGA	1 cut(s)	1086
PctI	GAATGC	1 cut(s)	985
PdmI	GAANNNNTTC	2 cut(s)	720, 1078
PfeI	GAWTC	2 cut(s)	823, 900
PkrI	GCNGC	6 cut(s)	92, 526, 535, 628, 706, 751
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	331, 367
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	331, 367
PspN4I	GGNNCC	3 cut(s)	109, 237, 742
PspPI	GGNCC	3 cut(s)	230, 573, 1043
PspXI	VCTCGAGB	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	107, 1063
RsaI	GTAC	2 cut(s)	167, 1098
RsaNI	GTAC	2 cut(s)	166, 1097
RseI	CAYNNNNRTG	2 cut(s)	735, 801
Rsr2I	CGGWCCG	1 cut(s)	230
RsrII	CGGWCCG	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	492, 918
SatI	GCNGC	6 cut(s)	91, 525, 534, 627, 705, 750
Sau3AI	GATC	5 cut(s)	15, 47, 107, 564, 1063
Sau96I	GGNCC	3 cut(s)	230, 573, 1043
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	2 cut(s)	333, 369
SduI	GDGCHC	2 cut(s)	195, 646
SfaNI	GCATC	5 cut(s)	436, 511, 664, 691, 1062
Sfr274I	CTCGAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	735, 801
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
SphI	GCATGC	1 cut(s)	426
SsiI	CCGC	6 cut(s)	35, 90, 93, 228, 258, 677
SspMI	CTAG	2 cut(s)	414, 851
StyD4I	CCNGG	2 cut(s)	331, 367
StyI	CCWWGG	3 cut(s)	405, 609, 1012
TaaI	ACNGT	3 cut(s)	779, 915, 1105
TaqI	TCGA	3 cut(s)	46, 197, 620
TaqII	GACCGA	1 cut(s)	93
TatI	WGTACW	2 cut(s)	165, 1096
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	823, 900
Tru1I	TTAA	2 cut(s)	492, 918
Tru9I	TTAA	2 cut(s)	492, 918
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	5 cut(s)	524, 533, 626, 704, 749
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	6 cut(s)	167, 719, 785, 819, 1071, 1075
TspGWI	ACGGA	1 cut(s)	1056
TspRI	CASTG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	4 cut(s)	101, 363, 716, 828
XbaI	TCTAGA	1 cut(s)	413
XceI	RCATGY	1 cut(s)	426
XhoI	CTCGAG	1 cut(s)	196
XmnI	GAANNNNTTC	2 cut(s)	720, 1078
XspI	CTAG	2 cut(s)	414, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.